| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2009 | Analyzing the breakpoint regions of genomic rearrangement events at nucleotide level by sequence alignment | Chu, Te-Chin; Liu, Tsunglin; Lee, D. T. ; Lee, Greg C.; Shih, Arthur Chun-Chieh | | | | |
| 2013 | Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination | Liu, WY; Chang, YM; Chen, SC; Lu, CH; Wu, YH; Lu, MY; Chen, DR; Shih, AC ; Sheue, CR; Huang, HC; Yu, CP; Lin, HH; Shiu, SH; Ku, M Sun-Ben; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 110(10), 3979-3984 | | | |
| 2011 | Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses | Wang, TY ; Chen, HL; Lu, MY ; Chen, YC; Sung, HM; Mao, CT; Cho, HY; Ke, HM; Hwa, TY; Ruan, SK; Hung, KY; Chen, CK; Li, JY; Wu, YC; Chen, YH; Chou, SP; Tsai, YW; Chu, TC; Shih, CC ; Li, WH ; Shih, MC | Biotechnology for biofuels 4, 24 | | | |
| 2009 | GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events | Te-Chin Chu; Tsunglin Liu; D.T. Lee ; Greg C. Lee; Arthur Chun-Chieh Shih | Bioinformatics 25(17), 2188-2193 | | | |
| 2013 | Historical Profiling of Maize Duplicate Genes Sheds Light on the Evolution of C4 Photosynthesis in Grasses | Yao-Ming Chang; Chia-Lin Chang; Wen-Hsiung Li ; Arthur Chun-Chieh Shih | Molecular Phylogenetics and Evolution 66(2), 453-462 | | | |
| 2007 | Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences | Shih, Arthur Chun-Chieh ; Lee, D. T. ; Peng, Chin-Lin; Wu, Yu-Wei | BMC Bioinformatics 8, 63 | | | |
| 2008 | Prediction of human miRNAs using tissue-selective motifs in 3′ UTRs | Chang, Y. -M.; Juan, H. -F.; Lee, T. -Y.; Chang, Y. -Y.; Yeh, Y. -M.; Li, W. -H. ; Shih, A. C. -C. | Proceedings of the National Academy of Sciences of the United States of America 105(44), 17061-17066 | | | |
| 2012 | Revealing the anti-tumor effect of artificial miRNA p-27-5p on human breast carcinoma cell line T-47D | Tseng, CW; Huang, HC; Shih, AC ; Chang, YY; Hsu, CC; Chang, JY; Li, WH ; Juan, HF | International journal of molecular sciences 13(5), 6352-69 | | | |
| 2006 | SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools | Shih, Arthur Chun-Chieh ; Lee, D. T. ; Lin, Laurent; Peng, Chin-Lin; Chen, Shiang-Heng; Wu, Yu-Wei; Wong, Chun-Yi; Chou, Meng-Yuan; Shiao, Tze-Chang; Hsieh, Mu-Fen | BMC Bioinformatics 7, 103 | | | |
| 2005 | SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results | Arthur Chun-Chieh Shih ; D.T. Lee ; Laurent Lin; Chin-Lin Peng; Shiang-Heng Chen; Chun-Yi Wong; Meng-Yuan Chou; Tze-Chang Shiao | | | | |
| 2008 | The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu sequences, and Abundant RNA Editing Sites | Shu-Miaw Chaw ; Arthur Chun-Chieh Shih ; Daryi Wang ; Yu-Wei Wu; Shu-Mei Liu; The-Yuan Chou | Molecular Biology and Evolution 25(3), 603-615 | | | |
| 2014 | The prognostic significance of RUNX2 and miR-10a/10b and their inter-relationship in breast cancer | Chang, CH; Fan, TC; Yu, JC; Liao, GS; Lin, YC; Shih, A ; Li, WH ; Yu, A. | Journal of Translational Medicine 12, 257 | | | |
| 2015 | Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors | Chun-Ping Yu; Sean Chun-Chang Chen; Yao-Ming Chang; Wen-Yu Liu; Hsin-Hung Lin; Jinn-Jy Lin; Hsiang June Chen; Yu-Ju Lu; Yi-Hsuan Wu; Mei-Yeh Jade Lu ; Chen-Hua Lu; Arthur Chun-Chieh Shih ; Maurice Sun-Ben Ku; Shin-Han Shiu; Shu-Hsing Wu ; Wen-Hsiung Li | Proceedings of the National Academy of Sciences of the United States of America 112(19), E2477-E2486 | | | |
| 2009 | Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing | Hsieh, L. -C.; Lin, S. -I.; Shih, A C. -C. ; Chen, J. -W.; Lin, W. -Y.; Tseng, C. -Y.; Li, W. -H. ; Chiou, T. -J. | PLANT PHYSIOLOGY 151(4), 2120-2132 | | | |
