| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2006 | 02.知識饗宴「人工智慧的奧妙─從自然輸入法到生物資訊」 | 許聞廉 | | | | |
| 2017 | 02.知識饗宴「自然語言理解－人工智慧的最終關卡」 | 許聞廉 | | | | |
| 2010 | An Informatics-assisted Label-free Quantitation Strategy that Depicts Phosphoproteomic Profiles in Lung Cancer Cell Invasion | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Pan, Szu-Hua; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi ; Hsu, Wen-Lian ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 9(11), 5582-5597 | | | |
| 2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C Dela Rosa; Rofeamor P Obena; Chen, Yu-Ju ; Wen-Lian Hsu ; Yen-Jen Oyang | Database (Oxford) 2017, bax082 | | | |
| 2017 | CIAL Valence-Arousal Analysis System at IJCNLP 2017 Shared Task: Dimensional Sentiment Analysis for Chinese Words and Phrases | Zheng-Wen Lin; Yung-Chun Chang; Chen-Ann Wang; Yu-Lun Hsieh; Wen-Lian Hsu | Dimensional Sentiment Analysis for Chinese Words (IJCNLP 2017) | | | |
| 2014 | CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce | Wei-Chun Chung; Chien-Chih Chen; Jan-Ming Ho ; Chung-Yen Lin ; Wen-Lian Hsu ; Yu-Chun Wang; Der-Tsai Lee ; Feipei Lai; Chih-Wei Huang; Yu-Jung Chang | PLoS One 9(6):e98146 | | | |
| 2017 | CTCPI – Convolution Tree Kernel-based Chemical-Protein Interaction Detection | Neha Warikoo; Yung-Chun Chang; Po-Ting Lai; Wen-Lian Hsu | | | | |
| 2017 | CTCPI – Convolution Tree Kernel-based Chemical-Protein Interaction Detection | Neha Warikoo; Yung-Chun Chang; Po-Ting Lai; Wen-Lian Hsu | | | | |
| 2007 | Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online) | Hsu, Chun-Nan ; Lai, Jin-Mei; Liu, Chia-Hung; Tseng, Huei-Hun; Lin, Chih-Yun; Lin, Kuan-Ting; Yeh, Hsu-Hua; Sung, Ting-Yi ; Hsu, Wen-Lian ; Su, Li-Jen; Lee, Sheng-An; Chen, Chan-Han; Lee, Gen-Cher; Lee, D. T. ; Shiue, Yow-Ling; Yeh, Chang-Wei; Chang, Chao-Hui; Kao, Cheng-Yan; Huang, Chi-Ying F. | BMC Bioinformatics 8, 1471-2105 | | | |
| - | Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations | Chang, Jia-Ming; Taly, Jean-Francois; Erb, Ionas; Sung, Ting-Yi; Hsu, Wen-Lian ; Tang, Chuan Yi; Notredame, Cedric; Su, Emily Chia-Yu | | | | |
| 2020 | GSAlign: an efficient sequence alignment tool for intra-species genomes | Hsin-Nan Lin; Wen-Lian Hsu | BMC Genomics 21, 182 | | | |
| 2018 | Hierarchical and programmable one-pot synthesis of oligosaccharides | Cheng-Wei Cheng; Yixuan Zhou; Wen-Harn Pan ; Supriya Dey; Chung-Yi Wu ; Wen-Lian Hsu ; Chi-Huey Wong | Nature Communications 9, 5202 | | | |
| 2010 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ying-Hao; Sudhir, Putty-Reddy; Wang, Yi-Ting; Chen, Yu-Ju ; Chen, Jeou-Yuan ; Sung, Ting-Yi ; Hsu, Wen-Lian | Molecular and Cellular Proteomics 9(1), 131-144 | | | |
| 2016 | iMet-Q: a user-friendly tool for metabolomics quantitation using dynamic peak-width determination | Hui-Yin Chang; Ching-Tai Chen; T. Mamie Lih; Ke-Shiuan Lynn; Chiun-Gung Juo; Wen-Lian Hsu ; Ting-Yi Sung | PLoS ONE 11(1), e0146112 | | | |
| 2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(12), 5396-5407 | | | |
| 2017 | iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm | Hui-Yin Chang; Ching-Tai Chen; Chu-Ling Ko; Yi-Ju Chen; Yu-Ju Chen ; Wen-Lian Hsu ; Chiun-Gung Juo; Ting-Yi Sung | Analytical Chemistry 89(24), 13128-13136 | | | |
| - | Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices | Lai, Jhih-Siang; Cheng, Cheng-Wei; Lo, Allan; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| - | Lipid exposure prediction enhances the inference of rotational preferences of transmembrane helices | Lai, Jhih-Siang; Cheng, Cheng-Wei; Lo, Allan; Sung, Ting-Yi; Hsu, Wen-Lian | PROTEINS: Structure, Function, and Bioinformatics | | | |
| 2016 | MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification | T. Mamie Lih; Wai-Kok Choong; Chen-Chun Chen; Cheng-Wei Cheng; Hsin-Nan Lin; Ching-Tai Chen; Hui-Yin Chang; Wen-Lian Hsu ; Ting-Yi Sung | Nucleic Acids Research 44(W1), W575-580 | | | |
| 2015 | MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach | Ke-Shiuan Lynn; Chen-Chun Chen; T. Mamie Lih; Cheng-Wei Cheng; Wan-Chih Su; Chun-Hao Chang; Chia-Ying Cheng; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung | Analytical Chemistry 87(4), 2466-2473 | | | |
