| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2012 | Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast | Chiang, S. F.; Swamy, K. B. S.; Tsai, Z. T. Y.; Hsu, L. T. W.; Lu, H. H. S.; Wang, D. ; Tsai, H. K. | GENE 491(2), 237-245 | | | |
| 2009 | Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome | Tsai, H. K. ; Huang, P. Y.; Kao, C. U.; Wang, D. | International Journal of Molecular Sciences 10(8), 3658-3670 | | | |
| 2008 | Discovering gapped binding sites of yeast transcription factors | Chen, CY; Tsai, HK ; Hsu, CM; Chen, MJ; Hung, HG; Huang, GT; Li, W. -H. | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(7), 2527-2532 | | | |
| 2011 | Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast | Swamy, B. S. K.; Chu, W. Y.; Wang, C. Y.; Tsai, H. K. ; Wang, D. | BMC Evolutionary Biology 11, 150 | | | |
| 2012 | Evolution of cis-regulatory elements in yeast de novo and duplicated new genes | Tsai, Z. T. Y.; Tsai, H. K. ; Cheng, J. H.; Lin, C. H.; Tsai, Y. F.; Wang, D. | BMC Genomics 13, 717 | | | |
| 2010 | Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast | Su, C. H.; Shih, C. H.; Chang, T. H. ; Tsai, H. K. | Genomics 96(6), 352-361 | | | |
| 2021 | iTARGEX analysis of yeast deletome reveals novel regulators of transcriptional buffering in S phase and protein turnover | Huang, Jia-Hsin; Liao, You-Rou; Lin, Tzu-Chieh; Tsai, Cheng-Hung; Lai, Wei-Yun; Chou, Yang-Kai; Leu, Jun-Yi ; Tsai, Huai-Kuang ; Kao, Cheng-Fu | Nucleic Acids Research 49(13), 7318-7329 | | | |
| 2011 | MetaABC—an integrated metagenomics platform for data adjustment, binning and clustering | Su, C. H.; Hsu, M. T.; Wang, T. Y.; Chiang, S. F.; Cheng, J. H.; Weng, F. C.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | BIOINFORMATICS 27(16), 2298-2299 | | | |
| 2007 | MYBS: A comprehensive web server for mining transcription factor binding sites in yeast | Tsai, H. K. ; Chou, M. Y.; Shih, C. H.; Huang, Grace T. W.; Chang, T. H. ; Li, W. H. | Nucleic Acids Research 35(suppl_2), W221-W226 | | | |
| 2021 | NK cell receptor and ligand composition influences the clearance of SARS-CoV-2 | Hsieh, Wan-Chen; Lai, En-Yu; Liu, Yu-Ting; Wang, Yi-Fu; Tzeng, Yi-Shiuan; Cui, Lu; Lai, Yun-Ju; Huang, Hsiang-Chi; Huang, Jia-Hsin; Ni, Hung-Chih; Tsai, Dong-Yan; Liang, Jian-Jong; Liao, Chun-Che ; Lu, Ya-Ting; Jiang, Laurence; Liu, Ming-Tsan; Wang, Jann-Tay; Chang, Sui-Yuan; Chen, Chung-Yu; Tsai, Hsing-Chen; Chang, Yao-Ming ; Wernig, Gerlinde; Li, Chia-Wei ; Lin, Kuo-I ; Lin, Yi-Ling ; Tsai, Huai-Kuang ; Huang, Yen-Tsung ; Chen, Shih-Yu | Journal of Clinical Investigation 131(21), e146408 | | | |
| 2010 | Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency | Weng, F.; Su, C. -H.; Hsu, M. -T.; Wang, T. -Y.; Tsai, H. -K. ; Wang, D. | BMC Bioinformatics 11(1), 565 | | | |
| 2009 | Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression | Sung, HM; Wang, TY ; Wang, D ; Huang, YS; Wu, JP; Tsai, HK ; Tzeng, J; Huang, CJ; Lee, YC; Yang, P; Hsu, J; Chang, T; Cho, CY; Weng, LC; Lee, TC; Chang, TH ; Li, WH ; Shih, MC | Molecular biology and evolution 26(11), 2533-2538 | | | |
| 2019 | Setting Boundaries for Genome-wide Heterochromatic DNA Deletions Through Flanking Inverted Repeats in Tetrahymena thermophila | Lin, C.Y.; Chao, J.L.; Tsai, H.K. ; Chalker, D.; Yao, M.C. | Nucleic Acids Research 47(10), 5181-5192 | | | |
| 2023 | Short human eccDNAs are predictable from sequences | Chang, Kai-Li; Chen, Jia-Hong; Lin, Tzu-Chieh; Leu, Jun-Yi ; Kao, Cheng-Fu ; Wong, Jin Yung; Tsai, Huai-Kuang | Briefings in Bioinformatics 24(3), bbad147 | | | |
| 2005 | Statistical methods for identifying yeast cell cycle transcription factors | Tsai, H. K. ; Lu, H. H. S.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 102(38), 13532-13537 | | | |
| 2012 | The impact of normalization and phylogenetic information on estimating the distance for metagenomes. | Su, C. H.; Wang, T. Y.; Hsu, M. T.; Weng, F. C. H.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(2), 619-628 | | | |
