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Showing results 1 to 20 of 28  next >
Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
2023Allometric scaling of interspecific RNA transcript abundance to extend the use of metatranscriptomics in characterizing complex communitiesMark Louie D. Lopez; Ya-ying Lin; Stephan Q Schneider; Chih-hao Hsieh; Fuh-Kwo Shiah; Ryuji J. Machida Molecular Ecology Resources 23(1), 52-63
2021Comparative analysis of zooplankton diversities and compositions estimated from complement DNA and genomic DNA amplicons, metatranscriptomics, and morphological identificationsMachida, RJ ; Kurihara, H; Nakajima, R; Sakamaki, T; Lin, YY; Furusawa, KICES Journal of Marine Science 78(9), 3428-3443
2018Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majorityPearman, J. K.; Leray, M.; Villalobos, R.; Machida, R. J. ; Berumen, M. L.; Knowlton, N.; Carvalho, S.Scientific Reports 8(1), 8090
2022Development of transcriptomics-based growth rate indices in two model eukaryotes and relevance to metatranscriptomics datasetsWye-Lup Kong; Ryuji J. Machida Molecular Ecology Resources 22(7), 2627-2639
2015Early life history of Neocalanus plumchrus (Calanoida: Copepoda) in the western subarctic PacificFujioka, HA; Machida, RJ ; Tsuda, APROGRESS IN OCEANOGRAPHY 137, 196-208
2022Erratum to: New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approachesBucklin, A; Peijnenburg, KTCA; Kosobokova, K; Machida, RJ ICES Journal of Marine Science 79(1), 245-245
2019GenBank is a reliable resource for 21st century biodiversity researchLeray, M; Knowlton, N; Ho, SL; Nguyen, BN; Machida, RJ PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 116 (45), 22651-22656
2012Global phylogeography of the deep-sea pelagic chetognath Eukrohnia hamataMiyamoto, H; Machida, RJ ; Nishida, SProgress in Oceanography 104, 99-109
2023Insights on the connectivity, genetic diversity, and population structure of Arctodiaptomus dorsalis (Marsh, 1907) (Copepoda: Calanoida: Diaptomidae) in the PhilippinesGuinto, SKP; Machida, RJ ; Papa, RDSJOURNAL OF CRUSTACEAN BIOLOGY 43(4), ruad070
2017Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samplesMachida, RJ ; Leray, M; Ho, SL; Knowlton, NScientific Data 4, 170027
2018MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated databaseLeray, M; Ho, SL; Lin, IJ; Machida, RJ BIOINFORMATICS 34(21), 3753-3754
2022MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequencesMatthieu Leray; Nancy Knowlton; Ryuji J Machida Environmental DNA 4(4), 894-907
2023Molecular characterization of the nearly complete nuclear ribosomal DNA sequence of the Neotropical freshwater copepod Arctodiaptomus dorsalis (Marsh, 1907) (Copepoda, Calanoida, Diaptomidae)Guinto, SKP; Machida, RJ ; Papa, RDSCrustaceana 96(5), 407-421
2021New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approachesBucklin, A; Peijnenburg, KTCA; Kosobokova, K; Machida, RJ ICES Journal of Marine Science 78(9), 3281-3287
2022Novel molecular resources for single-larva barcoding of enigmatic crustacean y-larvaeDreyer, N; Palero, F; Grygier, M; Savchenko, A; Kolbasov, G; Machida, R ; Chan, B ; Olesen, JAuthorea Preprints
2019Nuclear and mitochondrial ribosomal ratio as an index of animal growth rateKong, WL; Miki, T; Lin, YY; Makino, W; Urabe, J; Gu, SH; Machida, RJ LIMNOLOGY AND OCEANOGRAPHY-METHODS 17(11), 575-584
2017Occurrence of Mitochondrial CO1 Pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization Indicated by Recombined Nuclear Mitochondrial PseudogenesMachida, RJ ; Lin, YYPLOS ONE 12(2), e0172710
2012PCR primers for metazoan mitochondrial 12S ribosomal DNA sequencesMachida, RJ ; Kweskin, M; Knowlton, NPLoS One 7(4), e35887
2012PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequencesMachida, RJ ; Knowlton, NPLoS One 7(9), e46180
2023Potential PCR amplification bias in identifying complex ecological patterns: Higher species compositional homogeneity revealed in smaller-size coral reef zooplankton by metatranscriptomicsMattos, FMG; Dreyer, N; Fong, CL; Wen, YHV; Jain, D; De Vivo, M; Huang, YS; Mwihaki, JK; Wang, TY ; Ho, MJ ; Tsai, IJ ; Wang, J ; Chan, BKK ; Machida, RJ MOLECULAR ECOLOGY RESOURCES 24(3), e13911
Showing results 1 to 20 of 28  next >
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