| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2012 | A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. | Protasio, AV; Tsai, IJ ; Babbage, A; Nichol, S; Hunt, M; Aslett, MA; De Silva, N; Velarde, GS; Anderson, TJ; Clark, RC; Davidson, C; Dillon, GP; Holroyd, NE; LoVerde, PT; Lloyd, C; McQuillan, J; Oliveira, G; Otto, TD; Parker-Manuel, SJ; Quail, MA; Wilson, RA; Zerlotini, A; Dunne, DW; Berriman, M | PLoS neglected tropical diseases 6(1), e1455 | | | |
| 2021 | Assessing the rectal mucosal microbiota improves mild ulcerative colitis detection sensitivity and evaluation | YF Lin; CM Sung; HM Ke; WA Liu; HY Huang; MJ Lu; IJ Tsai ; SY Hsieh | gut microbes | | | |
| 2014 | Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. | Tanaka, R; Hino, A; Tsai, IJ ; Palomares-Rius, JE; Yoshida, A; Ogura, Y; Hayashi, T; Maruyama, H; Kikuchi, T | PloS one 9(10), e110769 | | | |
| 2021 | Biogeographic Changes in Forest Soil Microbial Communities of Offshore Islands—A Case Study of Remote Islands in Taiwan | Chang, Ed-Haun; Tsai, Isheng Jason ; Jien, Shih-Hao; Tian, Guanglong; Chiu, Chih-Yu | Forests 12(1), 4 | | | |
| 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | | | |
| 2022 | C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8 | Wu, Yun-Zhe; Jiang, Hang-Shiang; Han, Hsiao-Fen; Li, Po-Hsuan; Lu, Min R.; Tsai, Isheng Jason ; Wu, Yi-Chun | Developmental Biology 486, 96-108 | | | |
| 2022 | Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization | Hoh, Daphne Z.; Lee, Hsin-Han; Wada, Naohisa; Liu, Wei-An; Lu, Min R.; Lai, Cheng-Kuo; Ke, Huei-Mien; Sun, Pei-Feng; Tang, Sen-Lin ; Chung, Wen-Hsin; Chen, Ying-Lien; Chung, Chia-Lin; Tsai, Isheng Jason | BMC Biology 20(1), 236 | | | |
| 2014 | Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. | Tsai, IJ ; Tanaka, E; Masuya, H; Tanaka, R; Hirooka, Y; Endoh, R; Sahashi, N; Kikuchi, T | Genome biology and evolution 6(4), 861-72 | | | |
| 2019 | Comparative genomics of the major parasitic worms | Avril Coghlan; Rahul Tyagi; James A. Cotton; Nancy Holroyd; Bruce A. Rosa; Isheng Jason Tsai ; Dominik R. Laetsch; Robin N. Beech; Tim A. Day; Kymberlie Hallsworth-Pepin; Huei-Mien Ke; Tzu-Hao Kuo; Tracy J. Lee; John Martin; Rick M. Maizels; Prudence Mutowo; Philip Ozersky; John Parkinson; Adam J. Reid; Neil D. Rawlings; Diogo M. Ribeiro; Lakshmipuram Seshadri Swapna; Eleanor Stanley; David W. Taylor; Nicolas J. Wheeler; Mostafa Zamanian; Xu Zhang; Fiona Allan; Judith E. Allen; Kazuhito Asano; Simon A. Babayan; Germanus Bah; Helen Beasley; Hayley M. Bennett; Stewart A. Bisset; Estela Castillo; Joseph Cook; Philip J. Cooper; Teresa Cruz-Bustos; Carmen Cuéllar; Eileen Devaney; Stephen R. Doyle; Mark L. Eberhard; Aidan Emery; Keeseon S. Eom; John S. Gilleard; Daria Gordon; Yvonne Harcus; Bhavana Harsha; John M. Hawdon; Dolores E. Hill; Jane Hodgkinson; Petr Horák; Kevin L. Howe; Thomas Huckvale; Martin Kalbe; Gaganjot Kaur; Taisei Kikuchi; Georgios Koutsovoulos; Sujai Kumar; Andrew R. Leach; Jane Lomax; Benjamin Makepeace; Jacqueline B. Matthews; Antonio Muro; Noel Michael O’Boyle; Peter D. Olson; Antonio Osuna; Felix Partono; Kenneth Pfarr; Gabriel Rinaldi; Pilar Foronda; David Rollinson; Mercedes Gomez Samblas; Hiroshi Sato; Manuela Schnyder; Tomáš Scholz; Myriam Shafie; Vincent N. Tanya; Rafael Toledo; Alan Tracey; Joseph F. Urban; Lian-Chen Wang; Dante Zarlenga; Mark L. Blaxter; Makedonka Mitreva; Matthew Berriman | Nature Genetics 51(1), 163-174 | | | |
| 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | | | |
| 2020 | Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stages | Lu, MR; Lai, CK; Liao, BY; Tsai, IJ | Genome biology and evolution 12(7), 1019-1030 | | | |
| 2010 | Conservation of recombination hotspots in yeast. | Tsai, IJ ; Burt, A; Koufopanou, V | Proceedings of the National Academy of Sciences of the United States of America 107(17), 7847-52 | | | |
| 2012 | Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states. | Cho, LT; Wamaitha, SE; Tsai, IJ ; Artus, J; Sherwood, RI; Pedersen, RA; Hadjantonakis, AK; Niakan, KK | Development (Cambridge, England) 139(16), 2866-77 | | | |
| 2023 | Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing | Yu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang | Nucleic Acids Research 51(15), 7777-7797 | | | |
| 2014 | Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. | Palomares-Rius, JE; Hirooka, Y; Tsai, IJ ; Masuya, H; Hino, A; Kanzaki, N; Jones, JT; Kikuchi, T | BMC evolutionary biology 14, 69 | | | |
| 2020 | Establishment of three human induced pluripotent stem cell lines from a type 1 diabetic family harboring sequence variants associated with autoimmunity | E.P.F. Chu; C.H. Lin; C.H.H. Cho; I.F. Cheng; T.C. Kuo R.Y. Chen; C.N. Liao; J.C. Cheng; J.I.S. Tsai ; P.C. Wang; S.J. Chang; C.N. Shen | Stem Cell Research 49, 102029 | | | |
| 2015 | Estimating the Fitness Effects of New Mutations in the Wild Yeast Saccharomyces paradoxus. | Koufopanou, V; Lomas, S; Tsai, IJ ; Burt, A | Genome biology and evolution 7(7), 1887-95 | | | |
| 2016 | Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster. | Vicente, CS; Nascimento, FX; Barbosa, P; Ke, HM; Tsai, IJ ; Hirao, T; Cock, PJ; Kikuchi, T; Hasegawa, K; Mota, M | Microbial ecology 72(3), 669-681 | | | |
| 2019 | Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus. | Lee, HH; Ke, HM; Lin, CI; Lee, TJ; Chung, CL; Tsai, IJ | Genome biology and evolution 11(10), 2774-2788 | | | |
| 2023 | Evolution and Diversity of Bioluminescent Fungi | Ke, Huei-Mien; Lu, Min R.; Chang, Chiung-Chih; Hsiao, Chen; Ou, Jie-Hao; Taneyama, Yuichi; Tsai, Isheng Jason | The Mycota (MYCOTA, volume 14) (Switzerland : Springer) | | | |
