Skip navigation
  • 中文
  • English

DSpace CRIS

  • DSpace logo
  • Home
  • Organizations
  • Researchers
  • Research Outputs
  • Projects
  • Explore by
    • Organizations
    • Researchers
    • Research Outputs
    • Projects
  • Academic & Publications
  • Sign in
  • 中文
  • English
  1. Scholars Hub of the Academia Sinica
  2. Research Outputs

Browsing by Author


Jump to:
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Showing results 1 to 20 of 25  next >
Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
2024A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levelsWei-Min Ho; Chia-Ying Chen; Tai-Wei Chiang; Trees-Juen Chuang ACTA NEUROPATHOLOGICA COMMUNICATIONS 12, 77
2019A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populationsTe-Lun Mai; Trees-Juen Chuang GENOME RESEARCH 29(11), 1766-1776
2023Assessing the impacts of various factors on circular RNA reliabilityTrees-Juen Chuang ; Tai-Wei Chiang; Chia-Ying ChenLIFE SCIENCE ALLIANCE 6(5), e202201793
2017Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family triosTrees-Juen Chuang ; Yu-Hsiang Tseng; Chia-Ying Chen; Yi-Da WangSCIENTIFIC REPORTS 7, 7038
2022CircMiMi: a stand‑alone software for constructing circular RNA‑microRNA‑mRNA interactions across speciesTai-Wei Chiang; Te-Lun Mai; Trees-Juen Chuang BMC Bioinformatics 23, 164
2021Comparative analyses of single-cell transcriptomic profiles between In vitro totipotent blastomere-like cells and In vivo early mouse embryonic cellsLin, Po-Yu; Yang, Denny; Chuang, Chi-Hsuan; Lin, Hsuan; Chen, Wei-Ju; Chen, Chia-Ying; Chuang, Trees-Juen ; Lai, Chien-Ying; Li, Long-Yuan; Schuyler, Scott C.; Lu, Frank Leigh; Liu, Yu-Chuan; Lu, Jean Cells 10(11), 3111
2023Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencingYu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang Nucleic Acids Research 51(15), 7777-7797
2014DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammalsTrees-Juen Chuang ; Feng-Chi ChenMolecular Biology and Evolution 31(2), 387-396
2024FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencingTai-Wei Chiang; Song-En Jhong; Yu-Chen Chen; Chia-Ying Chen; Wei-Sheng Wu; Trees-Juen Chuang NUCLEIC ACIDS RESEARCH 52(D1), D115-D123
2010Gene family size conservation is a good indicator of evolutionary ratesChen, Feng-Chi; Chen, Chueng-Jong; Li, Wen-Hsiung ; Chuang, Trees-Juen Molecular Biology and Evolution 27(8), 1750-1758
2020Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autismYen-Ju Chen; Chia-Ying Chen; Te-Lun Mai; Chih-Fan Chuang; Yu-Chen Chen; Sachin Kumar Gupta; Laising Yen; Yi-Da Wang; Trees-Juen Chuang GENOME RESEARCH 30(3), 375-391
2007Human-specific insertions and deletions inferred from mammalian genome sequencesChen, F. C.; Chen, C. J.; Li, W. H. ; Chuang, T. J. Genome Research 17(1), 16-22
2014Impacts of Pretranscriptional DNA Methylation, Transcriptional Transcription Factor, and Posttranscriptional microRNA Regulations on Protein Evolutionary RateTrees-Juen Chuang ; Tai-Wei ChiangGenome Biology and Evolution 6(6), 1530-1541
2014Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotencyChan-Shuo Wu; Chun-Ying Yu; Ching-Yu Chuang; Michael Hsiao; Cheng-Fu Kao; Hung-Chih Kuo; Trees-Juen Chuang Genome Research 24(1), 25-36
2018Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cellsChuang, Trees-Juen ; Chen, Yen-Ju; Chen, Chia-Ying; Mai, Te-Lun; Wang, Yi-Da; Yeh, Chung­Shu; Yang, Min-Yu; Hsiao, Yu-Ting; Chang, Tien-Hsien ; Kuo, Tzu-Chien; Cho, Hsin-Hua; Shen, Chia-Ning  ; Kuo, Hung-Chih ; Lu, Mei-Yeh ; Chen, Yi-Hua; Hsieh, Shan-Chi; Chiang, Tai-WeiNUCLEIC ACIDS RESEARCH 46(7), 3671-3691
2014Is an Observed Non-co-linear RNA Product Spliced in trans, in cis or just in vitro?Chun-Ying Yu; Hsiao-Jung Liu; Li-Yuan Hung; Hung-Chih Kuo; Trees-Juen Chuang NUCLEIC ACIDS RESEARCH 42(14), 9410-9423
2023Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precisionMarieke Vromman; Jasper Anckaert; Stefania Bortoluzzi; Alessia Buratin; Chia-Ying Chen; Qinjie Chu; Trees-Juen Chuang ; Roozbeh Dehghannasiri; Christoph Dieterich; Xin Dong; Paul Flicek; Enrico Gaffo; Wanjun Gu; Chunjiang He; Steve Hoffmann; Osagie Izuogu; Michael S. Jackson; Tobias Jakobi; Eric C. Lai; Justine Nuytens; Julia Salzman; Mauro Santibanez-Koref; Peter Stadler; Olivier Thas; Eveline Vanden Eynde; Kimberly Verniers; Guoxia Wen; Jakub Westholm; Li Yang; Chu-Yu Ye; Nurten Yigit; Guo-Hua Yuan; Jinyang Zhang; Fangqing Zhao; Jo Vandesompele; Pieter-Jan VoldersNATURE METHODS 20, 1159-1169
2024Long-term Hematopoietic Transfer of the Anti-Cancer and Lifespan-Extending Capabilities of A Genetically Engineered Blood System by Transplantation of Bone Marrow Mononuclear CellsJing-Ping Wang; Chun-Hao Hung; Yao-Huei Liou; Ching-Chen Liu; Kun-Hai Yeh; Keh-Yang Wang; Zheng-Sheng Lai; Tzu-Chi Hsu; Tung-Liang Lee; Yu-Chiau Shyu; Pei-Wen Hsiao ; Liuh-Yow Chen ; Trees-Juen Chuang ; Chen-Hsin Albert Yu ; Nah-Shih Liao ; Che-Kun James Shen eLife 12, RP88275
2007Mathematical Properties of Some Measures of Evolutionary DistanceTzeng, Yun-Huei; Li, Wen-Hsiung ; Chuang, Trees-Juen Journal of Theoretical Biology 245(4), 790-792
2019NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectorsChia-Ying Chen; Trees-Juen Chuang BMC BIOINFORMATICS 20, 3
Showing results 1 to 20 of 25  next >
Explore by
  • Academic & Publications
  • Organizations
  • Researchers
  • Research Outputs
  • Projects
Build with DSpace-CRIS - Extension maintained and optimized by Logo 4SCIENCE Feedback