| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2022 | A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics | Chia-Feng Tsai; Yi-Ting Wang; Chuan-Chih Hsu ; Reta Birhanu Kitata; Rosalie K Chu; Marija Velickovic; Rui Zhao; Sarai M Williams; William B Chrisler; Marda L Jorgensen; Ronald J Moore; Ying Zhu; Karin D Rodland; Richard D Smith; Clive H Wasserfall; Tujin Shi; Tao Liu | bioRxiv | | | |
| 2015 | Effect of Sialylation on EGFR Phosphorylation and Resistance to Tyrosine Kinase Inhibition | Hsin-Yung Yen; Ying-Chih Liu; Nai-Yu Chen; Chia-Feng Tsai; Yi-Ting Wang; Yu-Ju Chen ; Tsui-Ling Hsu ; Pan-Chyr Yang; Chi-Huey Wong | Proceedings of the National Academy of Sciences of the United States of America(PNAS) 112(22), 6955-6960 | | | |
| 2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(12), 5396-5407 | | | |
| 2015 | Large-Scale Determination of Absolute Phosphorylation Stoichiometries in Human Cells by Motif-Targeting Quantitative Proteomics | Chia-Feng Tsai; Yi-Ting Wang; Hsin-Yung Yen; Chih-Chiang Tsou; Wei-Chi Ku; Pei-Yi Lin; Hsuan-Yu Chen ; Alexey Nesvizhskii; Yasushi Ishihama; Chen, Yu-Ju | NATURE COMMUNICATIONS 6, 6622 | | | |
| 2015 | Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry | Kitata, Reta Birhanu; Dimayacyac-Esleta, Baby Rorielyn; Choong, Wai-Kok; Chia-Feng Tsai; Tai-Du Lin; Chih-Chiang Tsou; Shao-Hsing Weng; Yi-Ju Chen; Pan-Chyr Yang; Arco, Susan; Nesvizhskii, Alexey; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(9), 3658-3669 | | | |
| 2012 | Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation | Ting Lo; Chia-Feng Tsai; Yu-Ru V. Shih; Yi-Ting Wang; Sheng-Chieh Lu; Ting-Yi Sung; Wen-Lian Hsu; Yu-Ju Chen; Oscar K. Lee | Journal of Proteome Research 11(2), 586-598 | | | |
| 2017 | Phosphoproteomics reveals HMGA1, a CK2 substrate, as a drug-resistant target in non-small cell lung cancer | Yi-Ting Wang; Szu-Hua Pan; Chia-Feng Tsai; Ting-Chun Kuo; Yuan-Ling Hsu; Hsin-Yung Yen; Wai-Kok Choong; Hsin-Yi Wu; Yen-Chen Liao; Tse-Ming Hong; Ting-Yi Sung; Pan-Chyr Yang; Yu-Ju Chen | Scientific Reports 7, 44021 | | | |
| 2015 | Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling | Baby Rorielyn Dimayacyac-Esleta; Chia-Feng Tsai; Reta Birhanu Kitata; Pei-Yi Lin; Wai Kok Choong; Tai-Du Lin; Yi-Ting Wang; Shao-Hsing Weng; Pan-Chyr Yang; Susan Arco; Ting-Yi Sung ; Yu-Ju Chen | Analytical Chemistry 87(24), 12016-12023 | | | |
| 2014 | Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography | Chia-Feng Tsai; Chuan-Chih Hsu; Jo-Nan Hung; Yi-Ting Wang; Wai-Kok Choong; Ming-Yao Zeng; Pei-Yi Lin; Ruo-Wei Hong; Ting-Yi Sung; Yu-Ju Chen | Analytical Chemistry 86(1), 685-693 | | | |
| 2013 | Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications | Chia-Ying Cheng; Chia-Feng Tsai; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | Journal of Proteome Research 12(5), 2305-2310 | | | |
| 2016 | Untargeted, Spectral Library-Free Analysis of Data Independent Acquisition Proteomics Data Generated Using Orbitrap Mass Spectrometers | Chih-Chiang Tsou; Chia-Feng Tsai; Guoci Teo; Yu-Ju Chen ; Alexey I. Nesvizhskii | PROTEOMICS 16(15-16), 2257-2271 | | | |
