| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2014 | A Comprehensive Functional Map of the Hepatitis C Virus Genome Provides a Resource for Probing Viral Proteins) | Roland Gilbert Remenyi; Hangfei Qi; Sheng-Yao Su; Zugen Chen; Nicholas C. Wu; Vaithilingaraja Arumugaswami; Shawna Truong; Virginia Chu; Tamar Stokelman; Hung-Hao Lo; C. Anders Olson; Ting-Ting Wu; Shu-Hwa Chen; Chung-Yen Lin; Ren Sun | mBio 5, e01469-14 | | | |
| 2018 | A gene profiling deconvolution approach to estimating immune cell composition from complex tissues | Shu-Hwa Chen; Wen-Yu Kuo; Sheng-Yao Su; Wei-Chun Chung; Jen-Ming Ho; Henry Horng-Shing Lu; Chung-Yen Lin | BMC Bioinformatics 19, 154 | | | |
| 2010 | A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles | Chia-Hao Chin; Shu-Hwa Chen; Chin-Wen Ho; Ming-Tat Ko; Chung-Yen Lin | BMC Bioinformatics 11(Suppl 1):S25 | | | |
| 2016 | Characterization of FN1-FGFR1 and Novel FN1-FGF1 Fusion Genes in a Large Series of Phosphaturic Mesenchymal Tumors | Jen-Chieh Lee; Sheng-Yao Su; Chun A Changou; Rong-Sen Yang; Keh-Sung Tsai; Michael T. Collins; Eric S. Orwoll; Chung-Yen Lin; Shu-Hwa Chen; Shyang-Rong Shih; Chen-Han Lee; Yoshinao Oda; Steven D. Billings; Chien-Feng Li; G. Petur Nielsen; Eiichi Konishi; Fredrik Petersson; Thomas O. Carpenter; Hsuan-Ying Huang; Andrew L. Folpe | Modern Pathology 29(11), 1335-1346 | | | |
| 2014 | cytoHubba: identifying hub objects and sub-networks from complex interactome | Chia-Hao Chin; Shu-Hwa Chen; Hsin-Hung Wu; Chin-Wen Ho; Ming-Tat Ko; Chung-Yen Lin | BMC Systems Biology 8(Suppl 4), S11 | | | |
| 2016 | Dual-compartmental transcriptomic proteomic analysis of a marine endosymbiosis exposed to environmental change | Anderson B. Mayfield; Yu-Bin Wang; Chii-Shiarng Chen; Shu-Hwa Chen; Chung-Yen Lin | Molecular Ecology 25(23), 5944-5958 | | | |
| 2018 | Functional Characteristics of the Flying Squirrels Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic Profiling | Hsiao-Pei Lu; Po-Yu Liu; Yu-bin Wang; Ji-Fan Hsieh; Han-Chen Ho; Shiao-Wei Huang; Chung-Yen Lin; Chih-hao Hsieh; Hon-Tsen Yu | Frontiers in Microbiology 8, 2622 | | | |
| 2014 | High-throughput profiling of influenza A virus hemagglutinin gene at single-nucleotide resolution | Nicholas C Wu; Arthur P Young; Laith Q Al-Mawsawi; C Anders Olson; Jun Feng; Hangfei Qi; Shu-Hwa Chen; I-Hsuan Lu; Chung-Yen Lin; Robert G Chin; Harding H Luan; Nguyen Nguyen; Stanley F Nelson; Xinmin Li; Ting-Ting Wu; Ren Sun | Scientific Reports 4, 4942 | | | |
| 2008 | Hubba: Hub Objects Analyzer : A Framework of Interactome Hubs Identification for Network Biology | Chung-Yen Lin; Chia-Hao Chin; Hsin-Hung Wu; Shu-Hwa Chen; Chin-Wen Ho; Ming-Tat Ko | Nucleic Acids Research volume 36(Web Server issue), W438-W443 | | | |
| 2015 | Identification of a Novel FN1-FGFR1 Genetic Fusion as a Frequent Event in Phosphaturic Mesenchymal Tumour | Jen-Chieh Lee; Yung-Ming Jeng; Sheng-Yao Su; Chen-Tu Wu; Keh-Sung Tsai; Cheng-Han Lee; Chung-Yen Lin; Jodi M. Carter; Jeng-Wen Huang; Shu-Hwa Chen; Shyang-Rong Shih; Adrián Mariño-Enríquez; Chih-Chih Chen; Andrew L. Folpe; Yih-Leong Chang; Cher-Wei Liang | The Journal of Pathology 235(4), 539-545 | | | |
| 2012 | Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena) | Hsiao-Pei Lu; Yu-bin Wang; Shiao-Wei Huang; Chung-Yen Lin; Martin Wu; Chih-hao Hsieh; Hon-Tsen Yu | BMC Genomics 13, 466 | | | |
| 2018 | Revealing the compositions of the intestinal microbiota of three Anguillid eel species by using 16S rDNA sequencing | Hsiang-Yi Hsu; Fang-Chi Chang; Yu-Bin Wang; Shu-Hwa Chen; Ya-Bo Lin; Chung-Yen Lin; Yu-San Han | Aquaculture Research 49(7), 2404-2415 | | | |
| 2014 | Sequencing and analysis of the transcriptome of the acorn worm Ptychodera flava, an indirect developing hemichordate | Shu-Hwa Chen; Kun-Lin Li; I-Hsuan Lu; Yu-Bin Wang; Che-Huang Tung; Hsiu-Chi Ting; Ching-Yi Lin; Chung-Yen Lin; Yi-Hsien Su; Jr-Kai Sky Yu | Marine Genomics 15, 35-43 | | | |
| 2012 | Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray | Chin-I Chang; Pei-Hsin Hung; Chia-Che Wu; Ta Chih Cheng; Jyh-Ming Tsai; King-Jung Lin; Chung-Yen Lin | Sensors 12(3), 2710-2728 | | | |
| 2013 | Spotlight: Assembly of Protein Complexes by Integrating Graph Clustering Methods | Chia-Hao Chin; Shu-Hwa Chen; Chun-Yu Chen; Chao. A Hsiung; Chin-Wen Ho; Ming-Tat Ko; Chung-Yen Lin | Gene 518(1), 42-51 | | | |
| 2018 | SQUAT: A Sequencing Quality Assessment Tool for Data Quality Assessments before and after Genome Assemblies | Li-An Yang; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin; Jan-Ming Ho | | | | |
| 2015 | Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework | Chih-Hao Fang; Yu-Jung Chang; Wei-Chun Chung; Ping-Heng Hsieh; Chung-Yen Lin; Jan-Ming Ho | BMC Genomics 16(Suppl 12), S9 | | | |
| 2017 | Systematic identification of anti-interferon function on hepatitis C virus genome reveals p7 as an immune evasion protein | Hangfei Qi; Virginia Chu; Nicholas C. Wu; Zugen Chen; Shawna Truong; Gurpreet Brar; Sheng-Yao Su; Yushen Du; Vaithilingaraja Arumugaswami; C. Anders Olson; Shu-Hua Chen; Chung-Yen Lin; Ting-Ting Wu; Ren Sun | Proceedings of the National Academy of Sciences of the United States of America (PNAS) 114(8), 2018-2023 | | | |
| 2016 | TEA: the epigenome platform for Arabidopsis methylome study | Sheng-Yao Su; Shu-Hwa Chen; I-Hsuan Lu; Yih-Shien Chiang; Yu-Bin Wang; Pao-Yang Chen; Chung-Yen Lin | BMC GENOMICS 17(Suppl 13), 1027 | | | |
| 2015 | The Effect of Red Light and Far-Red Light Conditions on Secondary Metabolism in Agarwood. | Kuo, Tony Chien-Yen; Chuan-Hung Chen; Shu-Hwa Chen; I-Hsuan Lu; Li-Chun Huang; Chung-Yen Lin; Chien-Yu Chen; Hsiao-Feng Lo; Shih-Tong Jeng; Long-Fang Oliver Chen | BMC Plant Biology | | | |
