| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2011 | An automated tool for detecting modification-specific marker ions to improve the sensitivity of modified peptide identification | Yang, Han-Yin; Tsou, Chih-Chiang; Chen, Yi-Ju; Lin, Yen-Yi; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2009 | Complementary quantitative proteomics reveals that transcription factor AP-4 mediates E-box-dependent complex formation for transcriptional repression of HDM2 | Ku, Wei-Chi; Chiu, Sung-Kay; Chen, Yi-Ju; Huang, Hsin-Hung; Wu, Wen-Guey; Chen, Yu-Ju | MOLECULAR & CELLULAR PROTEOMICS 8, 2034-2050 | | | |
| 2013 | DbPTM 3.0: An Informative Resource for Investigating Substrate Site Specificity and Functional Association of Protein Post-Translational Modifications | Lu, Cheng-Tsung; Huang, Kai-Yao; Su, Min-Gang; Lee, Tzong-Yi; Bretana, Neil Arvin; Chang, Wen-Chi; Chen, Yi-Ju; Chen, Yu-Ju ; Huang, Hsien-Da | NUCLEIC ACIDS RESEARCH 41(D1): D295-D305 | | | |
| 2012 | dbSNO: a Database of Cysteine S-nitrosylation | Lee, Tzong-Yi; Chen, Yi-Ju; Lu, Cheng-Tsung; Ching, Wei-Chieh; Teng, Yu-Chuan; Huang, Hsien-Da; Chen, Yu-Ju | BIOINFORMATICS 28(17), 2293-2295 | | | |
| 2018 | Glycoproteomic Alterations in Drug-Resistant Nonsmall Cell Lung Cancer Cells Revealed by Lectin Magnetic Nanoprobe-Based Mass Spectrometry | Waniwan, Juanilita T.; Chen, Yi-Ju; Capangpangan, Rey; Weng, Shao-Hsing; Chen, Yu-Ju | Journal of Proteome Research 17(11), 3761-3773 | | | |
| 2009 | MaXIC-Q Web: A Fully Automated Web Service Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Tsou, Chih-Chiang; Tsui, Yin-Hao; Yian, Yi-Hwa; Chen, Yi-Ju; Yang, Han-Yin; Yu, Chuan-Yih; Lynn, Ke-Shiuan; Chen, Yu-Ju ; Sung, Ting-Yi ; Hsu, Wen-Lian | Nucleic Acids Research 37(suppl_2), W661-W669 | | | |
| 2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Isotope Labeling and LC-MS | Tsui, Ethan Y. H.; Yian, Yi-Hwa; Tsou, Chih-Chiang; Yu, Paul C. Y.; Lynn, Ke-Shiuan; Chou, Wen-Chi; Chen, Yi-Ju; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2013 | Methods for Detection and Characterization of Protein S-nitrosylation | Chen, Yi-Ju; Ching, Wei-Chieh; Lin, Yu-Pei; Chen, Yu-Ju | Methods 62(2), p.138-150 | | | |
| 2008 | Nitric Oxide Physiological Responses and Delivery Mechanisms Probed by Water-soluble Roussin’s Red Ester and{Fe(NO)2}10 DNIC | Chen, Yi-Ju; Ku, Wei-Chi; Feng, Li-Ting; Tsai, Ming-Li; Hsieh, Chung-Hung; Hsu, Wen-Hwei; Liaw, Wen-Feng; Hung, Chen-Hsiung ; Chen, Yu-Ju | JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 130(33), 10929-10938 | | | |
| 2022 | Reduced symmetric dimethylation stabilizes vimentin and promotes metastasis in MTAP‐deficient lung cancer | Chang, Wen-Hsin; Chen, Yi-Ju; Hsiao, Yi-Jing; Chiang, Ching-Cheng; Wang, Chia-Yu; Chang, Ya-Ling; Hong, Qi-Sheng; Lin, Chien-Yu; Lin, Shr-Uen; Chang, Gee-Chen; Chen, Hsuan-Yu ; Chen, Yu-Ju ; Chen, Ching-Hsien; Yang, Pan-Chyr; Yu, Sung-Liang | EMBO reports 23(8), e54265 | | | |
| 2010 | S-alkylating labeling strategy for site-specific identification of the s-nitrosoproteome | Chen, Yi-Ju; Ku, Wei-Chi; Lin, Pei-Yi; Chou, Hsiao-Chiao; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 9(12), 6417–6439 | | | |
| 2011 | SNOSite: exploiting maximal dependence decomposition to identify cysteine S-nitrosylation with substrate site specificity | Lee, Tzong-Yi; Chen, Yi-Ju; Lu, Tsung-Cheng; Huang, Hsien-Da; Chen, Yu-Ju | PLoS One 6(7),1-11 | | | |
| 2022 | Tissue Proteogenomic Landscape Reveals the Role of Uncharacterized SEL1L3 in Progression and Immunotherapy Response in Lung Adenocarcinoma | Shen, Chi-Ya; Chang, Wen-Hsin; Chen, Yi-Ju; Weng, Chia-Wei; Regmi, Prabha; Kier, Mickiela K. K.; Su, Kang-Yi; Chang, Gee-Chen; Chen, Jin-Shing; Chen, Yu-Ju ; Yu, Sung-Liang | Journal of Proteome Research 22(4), 1056-1070 | | | |
