| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2008 | A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis | Dai, Hong-Jie; Huang, Chi-Hsin; Lin, Jaimie Yi-Wen; Chou, Pei-Hsuan; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | | | | |
| 2008 | BIOSMILE web search: a web application for annotating biomedical entities and relations | Dai, Hong-Jie; Huang, Chi-Hsin; Lin, Ryan T. K.; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Nucleic Acids Research 36, W390-W398 | | | |
| 2007 | BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features | Tsai, Richard Tzong-Han; Chou, Wen-Chi; Su, Ying-Shan; Lin, Yu-Chun; Sung, Cheng-Lung; Dai, Hong-Jie; Yeh, Irene Tzu-Hsuan; Ku, Wei; Sung, Ting-Yi; Hsu, Wen-Lian | BMC Bioinformatics 8, 325-339 | | | |
| 2006 | Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching | Tsai, Richard Tzong-Han; Dai, Hong-Jie; Hung, Hsieh-Chuan; Sung, Cheng-Lung; Day, Min-Yuh; Hsu, Wen-Lian | | | | |
| 2012 | Coreference resolution of medical concepts in discharge summaries by exploiting | Dai, Hong-Jie; Chen, Chun-Yu; Wu, Chi-Yang; Lai, Po-Ting; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | JAMIA(Journal of the American Medical Informatics Association) ) 19, 888-896 | | | |
| 2011 | Enhancing search results with semantic annotation using augmented browsing | Dai, Hong-Jie; Tsai, Wei-Chi; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | | | | |
| 2011 | Entity Disambiguation Using a Markov-Logic Network | Dai, Hong-Jie; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | | | | |
| 2008 | Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles | Tsai, Richard Tzong-Han; Hung, Hsi-Chuan; Dai, Hong-Jie; Lin, Yi-Wen; Hsu, Wen-Lian | BMC Bioinformatics 9(Suppl 1): S3, 301-313 | | | |
| 2007 | Exploiting Likely-Positive and Unlabeled Data to Improve the Identification of Protein-Protein Interaction Articles | Tsai, Richard Tzong-Han; Hung, Hsi-Chuan; Dai, Hong-Jie; Lin, Yi-Wen; Hsu, Wen-Lian | | | | |
| 2008 | Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles | Tsai, Richard Tzong-Han; Hung, Hsi-Chuan; Dai, Hong-Jie; Lin, Yi-Wen; Hsu, Wen-Lian | BMC Bioinformatics 9(Suppl 1): S3 | | | |
| 2007 | Exploiting Unlabeled Internal Data in Conditional Random Fields to Reduce Word Segmentation Errors for Chinese Texts | Tsai, Richard Tzong-Han; Hung, Hsi-Chuan; Dai, Hong-Jie; Hsu, Wen-Lian | | | | |
| 2009 | HypertenGene: Extracting key hypertension genes from biomedical literature with position and automatically-generated template features | Tsai, Richard Tzong-Han; Lai, Po-Ting; Dai, Hong-Jie; Huang, Chi-Hsin; Chang, Yen-Ching; Hsu, WenLian | BMC Bioinformatics | | | |
| 2007 | IASL Systems in the Gene Mention Tagging Task and Protein Interaction Article Sub-task | Dai, Hong-Jie; Hung, Hsieh-Chuan; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | | | | |
| 2011 | Integration of Gene Normalization Stages and Co-reference Resolution Using a Markov-Logic Network | Dai, Hong-Jie; Chang, Yen-Ching; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Bioinformatics 27, 2586-2594 | | | |
| 2011 | MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature | Fang, Yu-Ching; Lai, Po-Ting; Dai, Hong-Jie; Hsu, Wen-Lian | BMC Bioinformatics 12, 471 | | | |
| 2006 | NERBio: using selected word conjunction, term normalization, and global patterns to improve biomedical named entity recognition | Tsai, Richard Tzong-Han; Sung, Cheng-Lung; Dai, Hong-Jie; Hung, Hsieh-Chuan; Sung, Ting-Yi; Hsu, Wen-Lian | BMC Bioinformatics 7, S11 | | | |
| 2010 | New Challenges for Biological Text-Mining in the Next Decade | Dai, Hong-Jie; Chang, Yen-Ching; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Computer Science and Technology 25(1), 169- | | | |
| 2006 | On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching | Tsai, Richard Tzong-Han; Hung, Hsieh-Chuan; Sung, Cheng-Lung; Dai, Hong-Jie; Hsu, Wen-Lian | | | | |
| 2008 | Overview of BioCreative II Gene Mention Recognition | Smith, Larry; Tanabe, Lorraine K.; Ando, Rie Johnson nee; Juo, Cheng-Ju; Chung, I-Fang; Hsu, Chun-Nan; Lin, Yu-Shi; Klinger, Roman; Friedrich, Christoph M.; Ganchev, Kuzman; Torii, Manabu; Liu, Hongfang; Haddow, Barry; Struble, Craig A.; Povinelli, Richard J.; Vlachos, Andreas; Baumgartner Jr., William A.; Hunter, Lawrence; Carpenter, Bob; Tsai, Richard Tzong-Han; Dai, Hong-Jie; Liu, Feng; Chen, Yifei; Sun, Chengjie; Katrenko, Sophia; Adriaans, Pieter; Blaschke, Christian; Perez, Rafel Torres; Neves, Mariana; Nakov, Preslav; Divoli, Anna; Mana, Manuel; Mata-Vazquez, Jacinto; Wilbur, W. John | Genome Biology 9 | | | |
| 2008 | Semi-automatic conversion between biomedical predicate argument structure standards | Tsai, Richard Tzong-Han; Dai, Hong-Jie; Huang, Chi-Hsin; Hsu, Wen-Lian | BMC Bioinformatics 9, 1582-1588 | | | |
