| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2015 | A Context-Aware Approach for Progression Tracking of Medical Concepts in Electronic Medical Records | Nai-Wen Chang; Hong-Jie Dai; Jitendra Jonnagaddala; Chih-Wei Chen; Richard Tzong-Han Tsai; Wen-Lian Hsu | Journal of Biomedical Informatics 58( Suppl):S150-7 | | | |
| 2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C Dela Rosa; Rofeamor P Obena; Chen, Yu-Ju ; Wen-Lian Hsu ; Yen-Jen Oyang | Database (Oxford) 2017, bax082 | | | |
| 2008 | BIOSMILE web search: a web application for annotating biomedical entities and relations | Hong-Jie Dai; Chi-Hsin Huang; Ryan T. K. Lin; Richard Tzong-Han Tsai; Wen-Lian Hsu | Nucleic Acids Research 36(Web Server issue), W390-W398 | | | |
| 2007 | BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features | Richard Tzong-Han Tsai; Wen-Chi Chou; Yu-Chun Lin; Ying-Shan Su; Cheng-Lung Sung; Hong-Jie Dai; Irene Tzu-Hsuan Yeh; Wei Ku; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 8:325 | | | |
| 2006 | Chinese Word Segmentation with Minimal Linguistic Knowledge: An Improved Conditional Random Fields Coupled with Character Clustering and Automatically Discovered Template Matching | Richard Tzong-Han Tsai; Hong-Jie Dai; Hsieh-Chuan Hung; Cheng-Lung Sung; Min-Yuh Day; Wen-Lian Hsu | | | | |
| 2008 | Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles | Richard Tzong-Han Tsai; Hsi-Chuan Hung; Hong-Jie Dai; Yi-Wen Lin; Wen-Lian Hsu | BMC Bioinformatics 9(Suppl 1), S3 | | | |
| 2007 | Exploiting Unlabeled Internal Data in Conditional Random Fields to Reduce Word Segmentation Errors for Chinese Texts | Richard Tzong-Han Tsai; Hsi-Chuan Hung; Hong-Jie Dai; Wen-Lian Hsu | | | | |
| 2007 | IASL Systems in the Gene Mention Tagging Task and Protein Interaction Article Sub-task | Hong-Jie Dai; Hsieh-Chuan Hung; Richard Tzong-Han Tsai; Wen-Lian Hsu | | | | |
| 2017 | Incorporating Dependency Trees Improve Identification of Pregnant Women on Social Media Platforms | Yi-Jie Huang; Chu Hsien Su; Yi-Chun Chang; Tseng-Hsin Ting; Tzu-Yuan Fu; Rou-Min Wang; Hong-Jie Dai; Yung-Chun Chang; Jitendra Jonnagaddala; Wen-Lian Hsu | | | | |
| 2014 | LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations | Hong-Jie Dai; Johnny Chi-Yang Wu; Wei-San Lin; Aaron James F. Reyes; Mira Anne C. dela Rosa; Shabbir Syed-Abdul; Richard Tzong-Han Tsai; Wen-Lian Hsu | Database (Oxford) 2014, bax069 | | | |
| 2013 | MarkerRIF: An Interactive Curation System for Biomarker | Hong-Jie Dai; Chi-Yang Wu; Wei-San Lin; Richard Tzong-Han Tsai; Wen-Lian Hsu | | | | |
| 2016 | MET network in PubMed: a text-mined network visualization and curation system | Hong-Jie Dai; Chu-Hsien Su; Po-Ting Lai; Ming-Siang Huang; Jitendra Jonnagaddala; Toni Rose Jue; Shruti Rao; Hui-Jou Chou; Marija Milacic; Onkar Singh; Syed Abdul Shabbir; Wen-Lian Hsu | Database (Oxford) 2016, baw090 | | | |
| 2006 | NERBio: Using Selected Word Conjunction, Term Normalization, and Global Patterns to Improve Biomedical Named Entity Recognition | Richard Tzong-Han Tsai; Cheng-Lung Sung; Hong-Jie Dai; Hsieh-Chuan Hung; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 7(Suppl 5), S11 | | | |
| 2006 | On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching | Richard Tzong-Han Tsai; Hsieh-Chuan Hung; Cheng-Lung Sung; Hong-Jie Dai; Wen-Lian Hsu | | | | |
| 2017 | Pregnant Women Recognition from Social Media for Health-related Information Exploration | Yi-Jie Huang; Chu Hsien Su; Yi-Chun Chang; Tseng-Hsin Ting; Tzu-Yuan Fu; Rou-Min Wang; Hong-Jie Dai; Yung-Chun Chang; Jitendra Jonnagaddala; Wen-Lian Hsu | The First International Workshop on Digital Disease Detection using Social Media (IJCNLP 2017) | | | |
| 2016 | Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles | Nai-Wen Chang; Hong-Jie Dai; Yu-Lun Hsieh; Wen-Lian Hsu | | | | |
| 2013 | TEMPTing System: A Hybrid Method of Rule and Machine Learning for Temporal Relation Extraction in Patient Discharge Summaries | Yung-Chun Chang; Johnny Chi-Yang Wu; Jian-Ming Chen; Hong-Jie Dai; Wen-Lian Hsu | Journal of Biomedical Informatics 46( Supplement), S54-S62 | | | |
| 2014 | TMUNSW System for Risk Factor Recognition and Progression Tracking | Nai-Wen Chang; Hong-Jie Dai; Chih-Wei Chen; Jitendra Jonnagaddala; Chou-Yang Chien; Manish Kumar; Richard Tzong-Han Tsai; Wen-Lian Hsu | | | | |
| 2009 | Using Contextual Information to Clarify Gene Normalization Ambiguity | Po-Ting Lai; Yue-Yang Bow; Chi-Hsin Huang; Hong-Jie Dai; Richard Tzong-Han Tsai; Wen-Lian Hsu | | | | |
