| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2018 | Biology and genome of a newly discovered sibling species of Caenorhabditis elegans | Kanzaki, Natsumi; Tsai, Isheng J.; Tanaka, Ryusei; Hunt, Vicky L.; Liu, Dang; Tsuyama, Kenji; Maeda, Yasunobu; Namai, Satoshi; Kumagai, Ryohei; Tracey, Alan; Holroyd, Nancy; Doyle, Stephen R.; Woodruff, Gavin C.; Murase, Kazunori; Kitazume, Hiromi; Chai, Cynthia; Akagi, Allison; Panda, Oishika; Ke, Huei-Mien; Schroeder, Frank C.; Wang, John ; Berriman, Matthew; Sternberg, Paul W.; Sugimoto, Asako; Kikuchi, Taisei | Nature Communications 9, 3216 | | | |
| 2022 | Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization | Hoh, Daphne Z.; Lee, Hsin-Han; Wada, Naohisa; Liu, Wei-An; Lu, Min R.; Lai, Cheng-Kuo; Ke, Huei-Mien; Sun, Pei-Feng; Tang, Sen-Lin ; Chung, Wen-Hsin; Chen, Ying-Lien; Chung, Chia-Lin; Tsai, Isheng Jason | BMC Biology 20(1), 236 | | | |
| 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | | | |
| 2023 | Evolution and Diversity of Bioluminescent Fungi | Ke, Huei-Mien; Lu, Min R.; Chang, Chiung-Chih; Hsiao, Chen; Ou, Jie-Hao; Taneyama, Yuichi; Tsai, Isheng Jason | The Mycota (MYCOTA, volume 14) (Switzerland : Springer) | | | |
| 2022 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J | Genome Research 32(5), 864-877 | | | |
| 2022 | Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks | Ng, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason | Genome Biology and Evolution 14(6), evac083 | | | |
| 2020 | Mycena genomes resolve the evolution of fungal bioluminescence | Ke, Huei-Mien; Lee, Hsin-Han; Lin, Chan-Yi Ivy; Liu, Yu-Ching; Lu, Min R.; Hsieh, Jo-Wei Allison; Chang, Chiung-Chih; Wu, Pei-Hsuan; Lu, Meiyeh Jade ; Li, Jeng-Yi; Shang, Gaus; Lu, Rita Jui-Hsien; Nagy, László G.; Chen, Pao-Yang ; Kao, Hsiao-Wei; Tsai, Isheng Jason | Proceedings of the National Academy of Sciences 117(49), 31267-31277 | | | |
| 2012 | PGASO: A synthetic biology tool for engineering a cellulolytic yeast | Chang, Jui-Jen; Ho, Cheng-Yu; Ho, Feng-Ju; Tsai, Tsung-Yu; Ke, Huei-Mien; Wang, Christine H-T; Chen, Hsin-Liang; Shih, Ming-Che ; Huang, Chieh-Chen; Li, Wen-Hsiung | Biotechnology for Biofuels 5, 53 | | | |
| 2023 | Single-worm long-read sequencing reveals genome diversity in free-living nematodes | Lee, Yi-Chien; Ke, Huei-Mien; Liu, Yu-Ching; Lee, Hsin-Han; Wang, Min-Chen; Tseng, Yung-Che ; Kikuchi, Taisei; Tsai, Isheng Jason | Nucleic Acids Research 51(15), 8035-8047 | | | |
| 2021 | The rectal mucosal but not fecal microbiota detects subclinical ulcerative colitis | Lin, Yu-Fei; Sung, Chang Mu; Ke, Huei-Mien; Kuo, Chia-Jung; Liu, Wei-an; Tsai, Wen-Sy; Lin, Cheng-Yu; Cheng, Hao-Tsai; Lu, Meiyeh J ; Tsai, Isheng J.; Hsieh, Sen-Yung | Gut Microbes 13(1), 1832856 | | | |
| 2023 | Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria | Sahu, Neha; Indic, Boris; Wong-Bajracharya, Johanna; Merényi, Zsolt; Ke, Huei-Mien; Ahrendt, Steven; Monk, Tori-Lee; Kocsubé, Sándor; Drula, Elodie; Lipzen, Anna; Bálint, Balázs; Henrissat, Bernard; Andreopoulos, Bill; Martin, Francis M.; Bugge, Harder Christoffer; Rigling, Daniel; Ford, Kathryn L.; Foster, Gary D.; Pangilinan, Jasmyn; Papanicolaou, Alexie; Barry, Kerrie; LaButti, Kurt; Virágh, Máté; Koriabine, Maxim; Yan, Mi; Riley, Robert; Champramary, Simang; Plett, Krista L.; Grigoriev, Igor V.; Tsai, Isheng Jason ; Slot, Jason; Sipos, György; Plett, Jonathan; Nagy, László G. | Nature Microbiology 8, 1668-1681 | | | |
