| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2006 | A two-stage classifier for protein beta-turn prediction using support vector machines | Chiu, Hua-Sheng; Lin, Hsin-Nan; Lo, Allan; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2008 | Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function | Lo, Allan; Chiu, Hua-Sheng; Sung, Ting-Yi; Lyu, Ping-Chiang; Hsu, Wen-Lian | Journal of Proteome Research 7 | | | |
| - | Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices | Lai, Jhih-Siang; Cheng, Cheng-Wei; Lo, Allan; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| - | Lipid exposure prediction enhances the inference of rotational preferences of transmembrane helices | Lai, Jhih-Siang; Cheng, Cheng-Wei; Lo, Allan; Sung, Ting-Yi; Hsu, Wen-Lian | PROTEINS: Structure, Function, and Bioinformatics | | | |
| 2009 | Predicting helix-helix interactions from residue contacts in membrane proteins | Lo, Allan; Chiu, Yi-Yuan; Rødland, Einar Andreas; Lyu, Ping-Chiang; Sung, Ting-Yi; Hsu, Wen-Lian | Bioinformatics 25(8), 996-1003 | | | |
| 2006 | Protein Subcellular Localization Prediction Based on Compartment-Specific Biological Features | Su, Emily Chia-Yu; Lo, Allan; Chiu, Hua-Sheng; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2007 | Protein subcellular localization prediction based on compartment-specific features and structure conservation | Su, Emily Chia-Yu; Chiu, Hua-Sheng; Lo, Allan; Hwang, Jenn-Kang; Sung, Ting-Yi; Hsu, Wen-Lian | BMC Bioinformatics 8 | | | |
| 2008 | PSLDoc: protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis | Chang, Jia-Ming; Su, Emily Chia-Yu; Lo, Allan; Chiu, Hua-Sheng; Sung, Ting-Yi; Hsu, Wen-Lian | PROTEINS: Structure, Function, and Bioinformatics 72, 693-710 | | | |
| 2011 | TMPad: an integrated structural database for helix-packing folds in transmembrane proteins | Lo, Allan; Cheng, Cheng-Wei; Chiu, Yi-Yuan; Sung, Ting-Yi; Hsu, Wen-Lian | Nucleic Acids Research 39, D347--355 | | | |
| 2006 | Transmembrane Helix and Topology Prediction Using Hierarchical SVM Classifiers and an Alternating Geometric Scoring Function | Lo, Allan; Chiu, Hua-Sheng; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
