| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2006 | Fly-DPI: Database of Protein Interactomes for D. melanogaster in the Approach of Systems Biology. | Lin, C. Y.; Chen, S. H.; Cho, C. S.; Chen, C. L.; Lin, F. K.; Lin, C. H.; Chen, P. Y.; Lo, C. Z.; Hsiung, C. A. | BMC Bioinformatics 7, S18 | | | |
| 2005 | hp-DPI: Helicobacter pylori Database of Protein Interactomes, A Combined Experimental and Inferring Interactions | Lin, C. Y.; Chen, C. L.; Cho, C. S.; Wang, L. M.; Chang, C. M.; Chen, P. Y.; Lo, C. Z.; Hsiung, C. A. | Bioinformatics 21, 1288-1290 | | | |
| 2009 | Phylogenetic reconstruction by Automatic Likelihood Model Selector (PALM) : A Framework for Phylogenetic Analysis with the Best Substitution Model | Chen, S.H.; Su, S. Y.; Lo, C. Z.; Huang, T. J.; Kuo, B. H.; Lin, C. Y. | PLoS ONE 4(12), e8116 | | | |
| 2003 | Primer Design Assistant (PDA): a Web-based Primer Design Tool. | Lin, C. Y.; Chen, S. H; Lo, C. Z.; Cho, C. S.; Hsiung, C. A. | Nucleic Acids Research 31, 3751-3754 | | | |
| 2008 | Unique Probe Selector (UPS): A Comprehensive Web Service for Probe Design and Oligo Nucleotide Arrays | Chen, S. H.; Lo, C. Z.; Tsai, M. C.; Hsiung, C. A.; Lin, C. Y. | BMC Bioinformatics 8, S8 | | | |
| 2010 | UPS 2.0: Unique Probe Selector for Probe Design and Oligonucleotide Microarrays in Pangenomic/ Genomic Level | Chen, S. H.; Lo, C. Z.; Su, S. Y.; Kuo, B. H.; Hsiung, A. C.; Lin, C. Y. | BMC Genomics 11(Suppl 4), S6 | | | |
