| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2016 | Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. | Yue, JX; Kozmikova, I; Ono, H; Nossa, CW; Kozmik, Z; Putnam, NH; Yu, JK; Holland, LZ | Genome Biology and Evolution 8(8), 2387-2405 | | | |
| 2020 | Deeply conserved synteny resolves early events in vertebrate evolution | Simakov, O; Marletaz, F; Yue, JX; O'Connell, B; Jenkins, J; Brandt, A; Calef, R; Tung, CH; Huang, TK; Schmutz, J; Satoh, N; Yu, JK ; Putnam, NH; Green, RE; Rokhsar, DS | NATURE ECOLOGY & EVOLUTION 4, 820-830 | | | |
| 2015 | Hemichordate genomes and deuterostome origins. | Simakov, O; Kawashima, T; Marletaz, F; Jenkins, J; Koyanagi, R; Mitros, T; Hisata, K; Bredeson, J; Shoguchi, E; Gyoja, F; Yue, JX; Chen, YC; Freeman, RM Jr; Sasaki, A; Hikosaka-Katayama, T; Sato, A; Fujie, M; Baughman, KW; Levine, J; Gonzalez, P; Cameron, C; Fritzenwanker, JH; Pani, AM; Goto, H; Kanda, M; Arakaki, N; Yamasaki, S; Qu, J; Cree, A; Ding, Y; Dinh, HH; Dugan, S; Holder, M; Jhangiani, SN; Kovar, CL; Lee, SL; Lewis, LR; Morton, D; Nazareth, LV; Okwuonu, G; Santibanez, J; Chen, R; Richards, S; Muzny, DM; Gillis, A; Peshkin, L; Wu, M; Humphreys, T; Su, YH; Putnam, NH; Schmutz, J; Fujiyama, A; Yu, JK; Tagawa, K; Worley, KC; Gibbs, RA; Kirschner, MW; Lowe, CJ; Satoh, N; Rokhsar, DS; Gerhart, J | Nature 527(7579), 459-465 | | | |
| 2008 | The amphioxus genome and the evolution of the chordate karyotype. | Putnam, NH; Butts, T; Ferrier, DE; Furlong, RF; Hellsten, U; Kawashima, T; Robinson-Rechavi, M; Shoguchi, E; Terry, A; Yu, JK; Benito-Gutierrez, EL; Dubchak, I; Garcia-Fernandez, J; Gibson-Brown, JJ; Grigoriev, IV; Horton, AC; de Jong, PJ; Jurka, J; Kapitonov, VV; Kohara, Y; Kuroki, Y; Lindquist, E; Lucas, S; Osoegawa, K; Pennacchio, LA; Salamov, AA; Satou, Y; Sauka-Spengler, T; Schmutz, J; Shin-I, T; Toyoda, A; Bronner-Fraser, M; Fujiyama, A; Holland, LZ; Holland, PW; Satoh, N; Rokhsar, DS | NATURE 453(7198), 1064-71 | | | |
| 2014 | The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution. | Yue, JX; Yu, JK; Putnam, NH; Holland, LZ | Genome Biology and Evolution 6(10), 2681-2696 | | | |
