| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2014 | Associations between intronic non-B DNA structures and exon skipping | Tsai, Z.T.Y.; Chu, W.Y.; Cheng, J.H.; Tsai, H.K. | Nucleic Acids Research 42(2), 739-747 | | | |
| 2015 | Contribution of sequence motif, chromatin state, and DNA structure features to predictive models of transcription factor binding in yeast | Tsai, Z.T.Y.; Shiu, S.H.; Tsai, H.K. | PLoS Computational Biology 11(8), e1004418 | | | |
| 2018 | Dynamics of cis-regulatory regions for introducing the divergent transcription factor motifs in the human genome | Kwan, S.Y.; Huang, J.H.; Tsai, Z.T.Y.; Tsai, H.K. | | | | |
| 2015 | Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues | Cheng, J.H.; Pan, D.; Tsai, Z.T.Y.; Tsai, H.K. | Scientific Reports 5, 12648 | | | |
| 2015 | The CrdRS two-component system in Helicobacter pylori responds to nitrosative stress | Hung, C.L.; Cheng, H.H.; Hsieh, W.C.; Tsai, Z.T.Y.; Tsai, H.K.; Chu, C.H.; Hsieh, W.P.; Lai, C.H.; Wang, W.C. | Molecular Microbiology 97(6), 1128-1141 | | | |
| 2013 | The Impact of Trans-Regulation on the Evolutionary Rates of Metazoan Proteins | Chen, Y.C.; Cheng, J.H.; Tsai, Z.T.Y.; Tsai, H.K.; Chuang, T.J. | Nucleic Acids Research 41(13), 6371-6380 | | | |
