| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2009 | A Simple Label-free LC-MS/MS Strategy Towards Comprehensive Phosphoproteomics View that Depict the Mechanisms of Cancer Cell Invasion | Wang, Yi-Ting; Tsai, Chia-feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2008 | Altered Membrane Proteomic Signature in Human Colorectal Cancer Revealed by Label-free Quantitation Strategy | Wu, Chien-Peng; Lin, Pei-Yi; Chien, Chih-Wei; Han, Chia-Li; Tsou, Chih-Chiang; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2011 | An automated tool for detecting modification-specific marker ions to improve the sensitivity of modified peptide identification | Yang, Han-Yin; Tsou, Chih-Chiang; Chen, Yi-Ju; Lin, Yen-Yi; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2011 | An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer | Han, Chia-Li; Chen, Jinn-Shiun; Chan, Err-Cheng; Wu, Chien-Peng; Yu, Kun-Hsing; Chen, Kuei-Tien; Tsou, Chih-Chiang; Tsai, Chia-Feng; Chien, Chih-Wei; Kuo, Yung-Bin; Lin, Pei-Yi; Yu, Jau-Song; Hsueh, Chuen; Chen, Min-Chi; Chan, Chung-Chuan; Chang, Yu-Sun; Chen, Yu-Ju | MOLECULAR & CELLULAR PROTEOMICS 10,1-15 | | | |
| 2010 | An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Pan, Sih-Hua; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2010 | An Informatics-assisted Label-free Quantitation Strategy that Depicts Phosphoproteomic Profiles in Lung Cancer Cell Invasion | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Pan, Szu-Hua; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi ; Hsu, Wen-Lian ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 9(11), 5582-5597 | | | |
| - | Comparative proteomic analysis of liver cancer stem cells | Tsai, Sheng-Ta; Shen, Chia-Ning; Tsou, Chih-Chiang; Mao, Wan-Yu; Chang, Wei-Chao; Hsu, Wen-Lian; Chen, Chung-Hsuan | Molecular and Cellular Proteomics 13, 1410-1411 | | | |
| 2009 | Comparative proteomic analysis of liver cancer stem cells | Tsai, Sheng-Ta; Shen, Chia-Ning; Tsou, Chih-Chiang; Mao, Wan-Yu; Chang, Wei-Chao; Hsu, Wen-Lian; Chen, Chung-Hsuan | | | | |
| 2010 | Comparative Proteomic Analysis of Proteins Involved in the Tumorigenic Process of Seminal Vesicle Carcinoma in Transgenic Mice | Chang, Wei-Chao; Chou, Chuan-Kai; Tsou, Chih-Chiang; Li, Sheng-Hsiang; Chen, Chein-Hung; Zhuo, Yu-Xing; Hsu, Wen-Lian; Chen, Chung-Hsuan | International journal of proteomics 1-14 | | | |
| 2010 | High-speed proteomic signature by informatics-assisted label-free quantitation | Lin, Pei-Yi; Tsai, Chia-Feng; Tsou, Chih-Chiang; Han, Chia-Li; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2008 | High-speed Proteomic Signature by Swift LC-MS/MS and Label-free Quantitation | Lin, Pei-Yi; Tsai, Chia-feng; Tsou, Chih-Chiang; Wu, Chien-Peng; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2010 | IDEAL-Q Plus: extended version for stable isotope labeling, label-free, and comparative quantitation analysis with assigning reliability to protein quantitation ratio | Tsou, Chih-Chiang; Yang, Han-Yin; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2008 | IDEAL-Q: An automated tool for high-performance label-free quantitative analysis | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ethan Yin-Hao; Yu, Paul Chuan-Yih; Wang, Yi-Ting; Lin, Pei-Yi; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2010 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ying-Hao; Sudhir, Putty-Reddy; Wang, Yi-Ting; Chen, Yu-Ju ; Chen, Jeou-Yuan ; Sung, Ting-Yi ; Hsu, Wen-Lian | Molecular and Cellular Proteomics 9(1), 131-144 | | | |
| 2011 | Improving phosphorylation site assignment by statistical analysis | Lu, Sheng-Chieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Yin; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2010 | Improving phosphorylation site assignment by statistical analysis on CID fragmentation | Lu, Sheng-Chieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Yin; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2010 | Improving phosphorylation site assignment by statistical analysis on CID fragmentation | Lu, Sheng-Shieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Ying; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2012 | Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells | Sudhir, Putty-Reddy; Chen, Chein-Hung; Kumari, Madireddy Pavana; Wang, Mei-Jung; Tsou, Chih-Chiang; Sung, Ting-Yi; Chen, Jeou-Yuan; Chen, Chung-Hsuan | Molecular and Cellular Proteomics 11, 901-915 | | | |
| 2009 | MassComp-Q: A comprehensive quantitation software tool for stable isotope labeling and label-free quantitative proteomics | Tsou, Chih-Chiang; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2009 | MaXIC-Q Web: A Fully Automated Web Service Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Tsou, Chih-Chiang; Tsui, Yin-Hao; Yian, Yi-Hwa; Chen, Yi-Ju; Yang, Han-Yin; Yu, Chuan-Yih; Lynn, Ke-Shiuan; Chen, Yu-Ju ; Sung, Ting-Yi ; Hsu, Wen-Lian | Nucleic Acids Research 37(suppl_2), W661-W669 | | | |
