| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2022 | Aberrant overexpression of HOTAIR inhibits abdominal adipogenesis through remodelling of genome-wide DNA methylation and transcription | Kuo, FC; Huang, YC; Yen, MR; Lee, CH; Hsu, KF; Yang, HY; Wu, LW; Lu, CH; Hsu, YJ; Chen, PY | Molecular metabolism 60, 101473 | | | |
| 2022 | BSImp: Imputing Partially Observed Methylation Patterns for Evaluating Methylation Heterogeneity | Chang, YT; Yen, MR; Chen, PY | Frontiers in Bioinformatics 2, 815289 | | | |
| 2019 | Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi. | Tran, PN; Yen, MR; Chiang, CY; Lin, HC ; Chen, PY | Applied microbiology and biotechnology 103(8), 3277-3287 | | | |
| 2017 | Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals. | Yen, MR; Suen, DF; Hsu, FM; Tsai, YH; Fu, H; Schmidt, W; Chen, PY | Plant physiology 175(4), 1826-1838 | | | |
| 2021 | Diversity of Fungal DNA Methyltransferases and Their Association With DNA Methylation Patterns | Nai, YS; Huang, YC; Yen, MR; Chen, PY | Frontiers in microbiology 11, 616922 | | | |
| 2022 | EED is required for mouse primordial germ cell differentiation in the embryonic gonad | Lowe, MG; Yen, MR; Hsu, FM; Hosohama, L; Hu, Z; Chitiashvili, T; Hunt, TJ; Gorgy, I; Bernard, M; Wamaitha, SE; Chen, PY ; Clark, AT | Developmental cell 57(12), 1482-1495.e5 | | | |
| 2020 | Epigenomic regulation of OTU5 in Arabidopsis thaliana | Hsieh, JW; Yen, MR; Chen, PY | GENOMICS 112(5), 3549-3559 | | | |
| 2018 | Exploring the transcriptome-methylome dynamics in Termitomyces mushroom | Hsu, FM; Hsieh, HM; Lu, JH; Hsieh, CJ; Huang, YJ; Yen, MR; Lin, CY; Ju, YM; Chen, PY | | | | |
| 2018 | Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa | Hou, J; Shi, X; Chen, C; Islam, MS; Johnson, AF; Kanno, T; Huettel, B; Yen, MR; Hsu, FM; Ji, T; Chen, PY; Matzke, M; Matzke, AJM; Cheng, J; Birchler, JA | Proceedings of the National Academy of Sciences of the United States of America 115(48), E11321-E11330 | | | |
| 2022 | HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes | Tu, YT; Chen, CY; Huang, YS; Chang, CH; Yen, MR; Hsieh, JA; Chen, PY ; Wu, K | Plant physiology 190(1), 882-897 | | | |
| 2020 | MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression | Teng, CS; Wu, BH; Yen, MR; Chen, PY | BMC GENOMICS 21, 375 | | | |
| 2023 | MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation | Lu, RJ; Lin, PY; Yen, MR; Wu, BH; Chen, PY | Botanical studies 64(1), 1 | | | |
| 2023 | Methylome Imputation by Methylation Patterns | Chang, YS; Yen, MR; Chen, PY | Methods in molecular biology (Clifton, N.J.) (New York, USA : Humana) | | | |
| 2017 | Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize. | Hsu, FM; Yen, MR; Wang, CT; Lin, CY; Wang, CJR ; Chen, PY | Epigenetics & chromatin 10, 42 | | | |
| 2016 | Stage-Specific Demethylation in Primordial Germ Cells Safeguards against Precocious Differentiation. | Hargan-Calvopina, J; Taylor, S; Cook, H; Hu, Z; Lee, SA; Yen, MR; Chiang, YS; Chen, PY; Clark, AT | Developmental cell 39, 1-12 | | | |
| 2020 | The expression of long non-coding RNAs is associated with H3Ac and H3K4me2 changes regulated by the HDA6-LDL1/2 histone modification complex in Arabidopsis | Hung, FY; Chen, C; Yen, MR; Hsieh, JW; Li, CL; Shih, YH; Chen, FF; Chen, PY ; Cui, YH; Wu, KQ | NAR Genomics and Bioinformatics 2(3), lqaa066 | | | |
| 2022 | Transcriptome of Nosema ceranae and Upregulated Microsporidia Genes during Its Infection of Western Honey Bee (Apis mellifera) | Li, YH; Chang, ZT; Yen, MR; Huang, YF; Chen, TH; Chang, JC; Wu, MC; Yang, YL ; Chen, YW; Nai, YS | Insects 13(8), 716 | | | |
| 2018 | TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency. | Tao, Y; Yen, MR; Chitiashvili, T; Nakano, H; Kim, R; Hosohama, L; Tan, YC; Nakano, A; Chen, PY; Clark, AT | STEM CELL REPORTS 10(1), 243-256 | | | |
