| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2015 | Analysis of Protein Stability by the Cycloheximide Chase Assay | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | BIO-PROTOCOL 5(1), e1374 | | | |
| 2014 | Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12 | Sakdithep Chaiyarit; Nilubon Singhto; Yi-Ju Chen; Chia-Ying Cheng; Wararat Chiangjong; Rattiyaporn Kanlaya; Henry H. N. Lam; Paleerath Peerapen; Ting-Yi Sung; Phornpimon Tipthara; Akhilesh Pandey; Terence C. W. Poon; Yu-Ju Chen; Ravi Sirdeshmukh; Maxey C. M. Chung; Visith Thongboonkerd | Journal of Proteome Research 13(7), 3160-3165 | | | |
| 2017 | Decoding the effect of isobaric substitutions on identifying missing proteins and variant peptides in human proteome | Wai-Kok Choong; T. Mamie Lih; Yu-Ju Chen; Ting-Yi Sung | Journal of Proteome Research 16(12), 4415-4424 | | | |
| 2014 | GSK3β controls epithelial–mesenchymal transition and tumor metastasis by CHIP-mediated degradation of Slug | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey I. Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | Oncogene 33(24), 3172-3182 | | | |
| 2009 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Chih-Chiang Tsou; Chia-Feng Tasi; Ying-Hao Tsui; Putty-Reddy Sudhir; Yi-Ting Wang; Yu-Ju Chen; Jeou-Yuan Chen; Ting-Yi Sung; Wen-Lian Hsu | IM-IIS-09-001 | | | |
| 2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Ethan Yin-Hao Tsui; Yi-Hwa Yian; Chih-Chiang Tsou; Paul Chuan-Yih Yu; Yi-Ju Chen; Ke-Shiuan Lynn; Wen-Chi Chou; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-08-004 | | | |
| 2017 | Multi-Q 2: automated and robust isobaric labeling quantitation analysis with enhanced graphical visualization of protein ratio clustering | Ching-Tai Chen; Cheng-Wei Cheng; Wei-Jhe Hsu; Hui-Yin Chang; Chu-Ling Ko; T. Mamie Lih; Yi-Ju Chen; Yu-Ju Chen; Wen-Lian Hsu; Ting-Yi Sung | | | | |
| 2012 | Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation | Ting Lo; Chia-Feng Tsai; Yu-Ru V. Shih; Yi-Ting Wang; Sheng-Chieh Lu; Ting-Yi Sung; Wen-Lian Hsu; Yu-Ju Chen; Oscar K. Lee | Journal of Proteome Research 11(2), 586-598 | | | |
| 2017 | Phosphoproteomics reveals HMGA1, a CK2 substrate, as a drug-resistant target in non-small cell lung cancer | Yi-Ting Wang; Szu-Hua Pan; Chia-Feng Tsai; Ting-Chun Kuo; Yuan-Ling Hsu; Hsin-Yung Yen; Wai-Kok Choong; Hsin-Yi Wu; Yen-Chen Liao; Tse-Ming Hong; Ting-Yi Sung; Pan-Chyr Yang; Yu-Ju Chen | Scientific Reports 7, 44021 | | | |
| 2014 | Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography | Chia-Feng Tsai; Chuan-Chih Hsu; Jo-Nan Hung; Yi-Ting Wang; Wai-Kok Choong; Ming-Yao Zeng; Pei-Yi Lin; Ruo-Wei Hong; Ting-Yi Sung; Yu-Ju Chen | Analytical Chemistry 86(1), 685-693 | | | |
| 2015 | Slug is temporally regulated by cyclin E in cell cycle and controls genome stability | Wen-Lung Wang; Hsiao-Chun Huang; Shih-Han Kao; Yi-Chiung Hsu; Yi-Ting Wang; Ker-Chau Li; Yu-Ju Chen; Sung-Liang Yu; Shu-Ping Wang ; Tzu-Hung Hsiao; Pan-Chyr Yang; Tse-Ming Hong | Oncogene 34(9), 1116-1125 | | | |
| 2013 | Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications | Chia-Ying Cheng; Chia-Feng Tsai; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | Journal of Proteome Research 12(5), 2305-2310 | | | |
| 2004 | Synthesis and Crystal Structure of Core-Modified benziporphyrin: thia-p-benziporphyrin | Chen-Hsiung Hung ; Cheng-Yu Lin; Ping-Yu Lin; Yu-Ju Chen | TETRAHEDRON LETTERS 45(1), 129-132 | | | |
