Publications

Results 1-53 of 53 (Search time: 0.001 seconds).

Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12022Plastid phylogenomics and plastome evolution in the morning glory family (Convolvulaceae)Wu, CS; Chen, CI; Chaw, SM Frontiers in Plant Science 13, 1061174
22022Evolution of mitochondrial RNA editing in extant gymnospermsWu, CS; Chaw, SM Plant J 111(6), 1676-1687
32022Contrasting patterns in the early stage of SARS-CoV-2 evolution between humans and minksTai, JH; Hsiao-Yu, Sun; Tseng, YC; Li, GG; Chang, SY; Yeh, SH; Chen, PJ; Chaw, SM ; Wang, HYMolecular Biology and Evolution 39(9), msac156
42022The Earth BioGenome Project 2020: Starting the clockLewin, Harris A.; Richards, Stephen; Aiden, Erez Lieberman; Allende, Miguel L.; Archibald, John M.; Bálint, Miklós; Barker, Katharine B.; Baumgartner, Bridget; Belov, Katherine; Bertorelle, Giorgio; Blaxter, Mark L.; Cai, Jing; Caperello, Nicolette D.; Carlson, Keith; Castilla-Rubio, Juan Carlos; Chaw, Shu-Miaw ; Chen, Lei; Childers, Anna K.; Coddington, Jonathan .; Conde, Dalia A.; Corominas, Montserrat; Crandall, Keith A.; Crawford, Andrew J.; DiPalma, Federica; Durbin, Richard; Ebenezer, ThankGod E.; Edwards, Scott V.; Fedrigo, Olivier; Flicek, Paul; Formenti, Giulio; Gibbs, Richard A.; Gilbert, Marcus Thomas Pius; Goldstein, Melissa M.; Graves, Jennifer Marshall; Greely, Henry T.; Grigoriev, Igor V.; Hackett, Kevin J.; Hall, Neil; Haussler, David; Helgen, Kristofer M.; Hogg, Carolyn J.; Isobe, Sachiko; Jakobsen, Kjetill Sigurd; Janke, Axel; Jarvis, Erich D.; Johnson, Warren E.; Jones, Steven J.M.; Karlsson, Elinor K.; Kersey, Paul J.; Kim, Jin-Hyoung; Kress, W. John; Kuraku, Shigehiro; Lawniczak, Mara K.N.; Leebens-Mack, James H.; Li, Xueyan; Lindblad-Toh, Kerstin; Liu, Xin; Lopez, Jose V.; Marques-Bonet, Tomas; Mazard, Sophie; Mazet, Jonna A.K.; Mazzoni, Camila J.; Myers, Eugene W.; O’Neill, Rachel J.; Paez, Sadye; Park, Hyun; Robinson, Gene E.; Roquet, Cristina; Ryder, Oliver A.; Sabir, Jamal S.M.; Shaffer, H. Bradley; Shank, Timothy M.; Sherkow, Jacob S.; Soltis, Pamela S.; Tang, Boping; Tedersoo, Leho; Uliano-Silva, Marcela; Wang, Kun; Wei, Xiaofeng; Wetzer, Regina; Wilson, Julia L.; Xu, Xun; Yang, Huanming; Yoder, Anne D.; Zhang, GuojiePROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 119(4), e2115635118
52021Reassessing Banana Phylogeny and Organelle Inheritance Modes Using Genome Skimming DataChung-Shien Wu; Edi Sudianto; Hui-Lung Chiu; Chih-Ping Chao; Shu-Miaw Chaw Frontiers in Plant Science 12, 713216
62021Genetic Differentiation and Demographic Trajectory of the Insular Formosan and Orii’s Flying FoxesKung-Ping Lin; Shu-Miaw Chaw ; Yun-Hua Lo; Teruo Kinjo; Chien-Yi Tung; Hsi-Chi Cheng; Quintin Lau; Yoko Satta; Masako Izawa; Shiang-Fan Chen; Wen-Ya KoJournal of Heredity 112(2), 192-203
72021Tight Association of Genome Rearrangements With Gene Expression in Conifer PlastomesWu, Chung-Shien; Sudianto, Edi; Chaw, Shu-Miaw BMC Plant Biology 21, 33
82020Genome skimming and exploration of DNA barcodes for Taiwan endemic cypressesWu, Chung-Shien; Sudianto, Edi; Hung, Yu-Mei; Wang, Bo-Cyun; Huang, Chiun-Jr; Chen, Chi-Tsong; Chaw, Shu-Miaw SCIENTIFIC REPORTS 10, 20650
92020Detecting Genetic Ancestry and Adaptation in the Taiwanese Han PeopleLo, Yun-Hua; Cheng, Hsueh-Chien; Hsiung, Chia-Ni; Yang, Show-Ling; Wang, Han-Yu; Peng, Chia-Wei; Chen, Chun-Yu; Lin, Kung-Ping; Kang, Mei-Ling; Chen, Chien-Hsiun; Chu, Hou-Wei; Lin, Chiao-Feng; Lee, Mei-Hsuan; Liu, Quintin; Satta, Yoko; Lin, Cheng-Jui; Lin, Marie; Chaw, Shu-Miaw ; Loo, Jun-Hun; Shen, Chen-Yang ; Ko, Wen-YaMolecular Biology and Evolution, msaa276
102020The origin and underlying driving forces of the SARS-CoV-2 outbreakChaw, SM ; Tai, JH; Chen, SL; Hsieh, CH; Chang, SY; Yeh, SH; Yang, WS; Chen, PJ; Wang, HYJournal of biomedical science 27, 73
112020The origin and evolution of plastid genome downsizing in Southern Hemispheric cypresses (Cupressaceae)Sudianto, E; Wu, CS; Chaw, SM Frontiers in Plant Science 11, 901
122019Enlarged and highly repetitive plastome of Lagarostrobos and plastid phylogenomics of PodocarpaceaeSudianto, E; Wu, CS; Leonhard, L; Martin, WF; Chaw, SM Molecular Phylogenetics and Evolution 133, 24-32
132019Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide.Fu, CN; Wu, CS; Ye, LJ; Mo, ZQ; Liu, J; Chang, YW; Li, DZ; Chaw, SM ; Gao, LMScientific Reports 9, 2773
142019Stout camphor tree genome fills gaps in understanding of flowering plant genome evolutionChaw, SM ; Liu, YC; Wu, YW; Wang, HY; Lin, CI; Wu, CS; Ke, HM; Chang, LY; Hsu, CY; Yang, HT; Sudianto, E; Hsu, MH; Wu, KP; Wang, LN; Leebens-Mack, JH; Tsai, IJ Nature Plants 5, 63-73
152019Two Independent Plastid accD Transfers to the Nuclear Genome of Gnetum and Other Insights on Acetyl-CoA Carboxylase Evolution in GymnospermsSudianto, E; Chaw, SM Genome biology and evolution 11(6), 1691-1705
162018Plastid Genome Evolution, Volume 85 (1st Edition)Shu-Miaw Chaw ; Robert K. JansenUK
172018Evolution of gymnosperm plastomesChaw, SM ; Wu, CS; Sudianto, EChaw, SM & R K Jansen (Editors). "Plastid Genome Evolution, Volume 85 (1st Edition)". ISBN: 9780128134573, Academic Press., Chapter 7, 195-216
182017Plastome Evolution in the Sole Hemiparasitic Genus Laurel Dodder (Cassytha) and Insights into the Plastid Phylogenomics of LauraceaeWu, CS; Wang, TJ; Wu, CW; Wang, YN; SM, Chaw GENOME BIOLOGY AND EVOLUTION 9(10), 2604-2614
192017Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae)Qu, XJ; Wu, CS; Chaw, SM ; Yi, TSGenome Biology and Evolution 9(4), 1110-1119
202017Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)Qu, XJ; Jin, JJ; Chaw, SM ; Li, DZ; Yi, TSSCIENTIFIC REPORTS 7, 41005
212016Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)Chung-Shien Wu; Shu-Miaw Chaw Genome Biology and Evolution 8
222016Revisiting the plastid phylogenomics of Pinaceae with two complete plastomes of Pseudolarix and Tsuga.Sudianto, E; Wu, CS; Lin, CP; Chaw, SM Genome Biology and Evolution 8(6), 1804-1811
232016Birth of four chimeric plastid gene clusters in Japanese umbrella pine.Hsu, CY; Wu, CS; Chaw, SM Genome Biology and Evolution 8(6), 1776-1784
242015Mitochondrial genome of a flashwing demoiselle, Vestalis melania from the Philippine Archipelago.Chen, MY; Chaw, SM ; Wang, JF; Villanueva, RJ; Nuneza, OM; Lin, CPMitochondrial DNA 26(5), 720-721
252015Complete mitochondrial genome of an enigmatic dragonfly, Epiophlebia superstes (Odonata, Epiophlebiidae).Wang, JF; Chen, MY; Chaw, SM ; Morii, Y; Yoshimura, M; Sota, T; Lin, CPMitochondrial DNA 26(5), 718-719
262015Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion.Wu, CS; Chaw, SM Genome biology and evolution 7(7), 2000-9
272015The complete plastome sequence of Gnetum ula (Gnetales: Gnetaceae).Hsu, CY; Wu, CS; Surveswaran, S; Chaw, SM Mitochondrial DNA , 1-2
282014Ancient Nuclear Plastid DNA in the Yew Family (Taxaceae)Hsu, CY; Wu, CS; Chaw, SM Genome Biology and Evolution 6(8), 2111-2121
292014Highly rearranged and size-variable chloroplast genomes in conifer II clade (cupressophytes): selection toward shorter intergenic spacers.Wu, CS; Chaw, SM Plant Biotechnology Journal 12(3), 344-353
302013Chloroplast phylogenomic indicates that Ginkgo biloba is sister to cycadsWu, CS; Chaw, SM ; Huang, YYGenome Biology and Evolution 5(1), 243-254
312012Tangy Scent in Toona sinensis (Meliaceae) Leaflets: Isolation, Functional Characterization, and Regulation of TsTPS1 and TsTPS2, Two Key Terpene Synthase Genes in the Biosynthesis of the Scent CompoundHsu, CY; Huang, PL; Chen, CM; Mao, CT; Chaw, SM CURRENT PHARMACEUTICAL BIOTECHNOLOGY  13(15), 2721-2732
322012The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat ContractionLin, CP; Wu, CS; Huang, YY; Chaw, SM Genome Biology and  Evolution 4(3), 374-381
332012Functional diversification of the Tubby-like protein gene families (TULPs) during eukaryotic evolution.Lai, CP; Chen, PH; Huang, JP; Tzeng, YH; Chaw, SM ; Shaw, JF.Biocatalysis and Agricultural Biotechnology 1, 2-8
342011Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny.Wu, Chung-Shien; Wang, Ya-Nan; Hsu, Chih-Yao; Chaw, Shu-Miaw Genome Biology and Evolution 3,1284-1295
352011Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organization.Wu, Chung-Shien; Lin, Ching-Ping; Hsu, Chih-Yaw; Wang, Ruijiang; Chaw, Shu-Miaw Genome Biology and Evolution 3, 309-319
362011Vessel elements present in the secondary xylem of Trochodendron and Tetracentron (Trochodendraceae)Li, Hong-Fang; Chaw, Shu-Maiw ; Du, Chun-Mei; Ren, YiFlora 206(6), 595-600
372010Comparative Chloroplast Genomics reveals the evolution of Pinaceae Genera and SubfamiliesLin, CP; Huang, JP; Wu, CS; Hsu, CY; Chaw, SM Genome Biology and Evolution 2, 504-517
382010Flower heating following anthesis and the evolution of gall midge pollination in SchisandraceaeLuo, S; Chaw, SM ; Zhang, D; Renner, SSAMERICAN JOURNAL OF BOTANY 97, 1220-1228
392010Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomesSalmans, ML; Chaw, SM ; Lin, CP; Shih, AC; Wu, YW; Mulligan, RMCurrent Genetics 56(5), 439-446
402010Cytotoxic constituents of Hydrangea angustipetala on human gastric carcinoma cellsHsieh, CR; Yu, PJ; Chen, LG; Chaw, SM ; Chang, CC; Wang, CC  Botanical studies 51, 45-51.
412009Patterns of plant invasions in China: Taxonomic, biogeographic, climatic approaches and anthropogenic effectsWu, SH; Sun, HT; Teng, YC; Rejmánek, M; Chaw, SM ; Yang, TYA; Hsieh, CFBiological Invasions 12, 2179-2206
422009Phylogeny of Calocedrus (Cupressaceae) , an eastern Asian and western North American disjunct gymnosperm genus, inferred from nuclear ribosomal nrITS sequencesChen, CH; Huang, JP; Tsai, CC; Chaw, SM Botanical Studies 50：425-433
432009Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategyWu, CS; Lai, YT; Lin, CP; Wang, YN; Chaw, SM Molecular Phylogenetics and Evolution 52, 115-124
442008The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu sequences, and Abundant RNA Editing SitesShu-Miaw Chaw ; Arthur Chun-Chieh Shih ; Daryi Wang ; Yu-Wei Wu; Shu-Mei Liu; The-Yuan ChouMolecular Biology and Evolution 25(3), 603-615
452008Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocotsWang, RJ; Cheng, CL; Chang, CC; Wu, CL; Su, TM; Chaw, SM BMC Evolutionary Biology 8, 36
462007Opposite Evolutionary Effects between Different Alternative Splicing PatternsChen, Feng-Chi; Chaw, Shu-Miaw ; Tzeng, Yun-Huei; Wang, Sheng-Shun; Chuang, Trees-Juen Molecular Biology and Evolution 24(7), 1443-1446
472007Plant Gene and Alternatively Spliced Variant Annotator. A Plant Genome Annotation Pipeline for Rice Gene and Alternatively Spliced Variant Identification with Cross-Species Expressed Sequence Tag Conservation from Seven Plant SpeciesChen, Feng-Chi; Wang, Sheng-Shun; Chaw, Shu-Miaw ; Huang, Yao-Ting; Chuang, Trees-Juen Plant Physiology 143(3), 1086-1095
482007Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYAWang, D ; Wu, YW; Shih, AC; Wu, CS; Wang, YN; Chaw, SM Molecular Biology and Evolution 24(9), 2040-2048
492007Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plantsWu, CS; Wang, YN; Liu, SM; Chaw, SM Molecular Biology and Evolution 24, 1366-1379
502006The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic ImplicationsChang, CC; Lin, HC; Lin, IP; Chow, TY; Chen, HH; Chen, WH; Cheng, CH; Lin, CY ; Liu, SM; Chang, CC; Chaw, SM Molecular Biology and Evolution 23(2), 279-291
512005A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS regionChaw, SM ; Walters, TW; Chang, CC; Hu, SH; Chen, SHMolecular Phylogenetics and Evolution 37, 214-234
521987Palynological notes on Bretschneidera sinensis HemslChaw, SM ; Peng, CI Bot Bull Acad Sin 28, 55-60
53-Chloroplast phylogenomics: Misleading factors underlie the long-debated phylogeny of Ginkgo bilobaWu, CS; Chaw, SM ; Huang, YYGenome Biology and Evolution