Publications

Results 1-152 of 152 (Search time: 0.001 seconds).

Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12023New depth record for oval squid, Sepioteuthis lessoniana, egg capsules in a mesophotic coral ecosystem natural habitatChao-Yang Kuo; Chun-Yen Lin; Ming-Jay Ho ; Chaolun Allen Chen MARINE BIODIVERSITY 53, 68-68
22023Jeju Island: a sentinel for tracking ocean warming impacts on high-latitude benthic communitiesLauriane Ribas-Deulofeu; Mathilde Loubeyres; Vianney Denis; Stéphane De Palmas; Sung-Jin Hwang; Seonock Woo; Jun-Im Song; Chaolun Allen Chen CORAL REEFS 42, 1097-1112
32023Succession and Emergence of Corals in High-Latitude (Temperate) Areas of Eastern Asia into the FutureShashank Keshavmurthy; Takuma Mezaki; James Davis Reimer; Kwang-Sik Choi; Chaolun Allen Chen Coral Reefs of Eastern Asia under Anthropogenic Impacts (Springer Nature Switzerland AG 2 : Springer Cham)
42023Transitional Coral Ecosystem of Taiwan in the Era of Changing ClimateChao-Yang Kuo; Shashank Keshavmurthy; Ya-Yi Huang; Ming-Jay Ho; Hernyi Justin Hsieh; An-Tzi Hsiao; Wei-Cheng Lo; Yi-Chia Hsin; Chaolun Allen Chen Coral Reefs of Eastern Asia under Anthropogenic Impacts (Springer Nature Switzerland AG 2 : Springer Cham)
52023The rhodoliths in the mesophotic coral ecosystem of Green Island, TaiwanMing-Jay Ho ; Shih-Wei Wang; Chao-Yang Kuo; Chaolun Allen Chen 
62023Baseline dynamics of Symbiodiniaceae genera and photochemical efficiency in corals from reefs with different thermal historiesCrystal J. McRae​; Shashank Keshavmurthy; Hung-Kai Chen; Zong-Min Ye; Pei-Jie Meng; Sabrina L. Rosset; Wen-Bin Huang; Chaolun Allen Chen ; Tung-Yung Fan​; Isabelle M. CôtéPEERJ 11, e15421
72023Transitional coral ecosystem of Taiwan in the era of changing climateChao-Yang Kuo; Shashank Keshavmurthy; Ya-Yi Huang; Min-Jay Ho ; Hernyi Justin Hsieh; An-Tzi Hsiao; Wei-Cheng Lo; Yi-Chia Hsin ; Chaolun Allen Chen Coral Reef of the Word: Transitional coral ecosystem in the East Asia
82022Fine intervals are required when using point intercept transects to assess coral reef statusChao-Yang Kuo; Chen-Han Tsai; Ya-Yi Huang; Wei Khang Heng; An-Tzi Hsiao; Hernyi Justin Hsieh; Chaolun Allen Chen FRONTIERS IN MARINE SCIENCE 9, 795512
92022Learning from the past is not enough to survive present and future bleaching threshold temperaturesShashank Keshavmurthy; Ting-Ru Chen; Pei-Jen Liu; Jih-Terng Wang; Chaolun Allen Chen SCIENCE OF THE TOTAL ENVIRONMENT 852, 158379
102022Variable responses to chronic and acute elevated temperature of three coral species from reefs with distinct thermal regimesCrystal J. McRae; Shashank Keshavmurthy; Pei-Jie Meng; Sabrina L. Rosset; Wen-Bin Huang; Chaolun Allen Chen ; Tung-Yung Fan; Isabelle M. CôtéMarine Biology 169, 97
112022Population genetics and demography of the coral-killing cyanobacteriosponge, Terpios hoshinota, in the Indo-West PacificChow, Savanna Wenhua; Keshavmurthy, Shashank; Reimer, James Davis; de Voogd, Nicole; Huang, Hui; Wang, Jih-Terng; Tang, Sen-Lin ; Schupp, Peter J.; Tan, Chun Hong; Liew, Hock-Chark; Soong, Keryea; Subhan, Beginer; Madduppa, Hawis; Chen, Chaolun Allen PeerJ 10, e13451
122022Scraping and grazing herbivorous/detritivorous fish display opposite feeding behaviours under different protection regulationsNathan William Price; Kao-Sung Chen; Chaolun Allen Chen ; Colin Kuo-Chang WenMarine Biology Research 17(9-10), 876-891
132022Historical Connectivity and Demography of the Ferocious Reef Crab, Eriphia ferox (Crustacea; Eriphiidae), Demonstrate That Taoyuan Algal Reef Is an Essential Population Source Along the East Taiwan StraitMu-Han Chen; Ya-Yi Huang; Bi-Ying Huang; Hernyi Justin Hsieh; Jen Nie Lee; Mei Lin Neo; Hironobu Fukami; Chaolun Allen Chen Frontiers in Marine Science 8, 799989
142022Crown-of-thorns starfish outbreak at Taiping Island (Itu Aba), Spratlys, South China SeaHeng, Wei Khang; Ho, Ming-Jay ; Kuo, Chao-Yang; Huang, Ya-Yi; Ko, Chia-Ying; Jeng, Ming-Shiou ; Chen, Chaolun Allen Bulletin of Marine Science 98(1), 101-102
152022Extra high superoxide dismutase in host tissue is associated with improving bleaching resistance in “thermal adapted” and Durusdinium trenchii-associating coralWang, Jih-Terng; Wang, Yi-Ting; Chen, Chaolun Allen ; Meng, Pei-Jei; Tew, Kwee Siong; Chiang, Pei-Wen; Tang, Sen-Lin PeerJ 10, e12746
162021What is for dessert? Crown-of-thorns starfish feeds on non-scleractinian anthozoans at Taiping Island (Itu Aba), Spratlys, South China SeaKuo, Chao-Yang; Ho, Ming-Jay ; Heng, Wei Khang; Huang, Ya-Yi; Ko, Chia-Ying; Jiang, Guo-Chen; Jeng, Ming-Shiou ; Chen, Chaolun Allen Marine Biodiversity 52, 2
172021A molecular census of early-life stage scleractinian corals in shallow and mesophotic zonesDerek Soto; Stéphane De Palmas; Ming-Jay Ho ; Vianney Denis; Chaolun Allen Chen Ecology and Evolution 11(21), 14573-14584
182021Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic islandStéphane de Palmas; Derek Soto; Ming-Jay Ho ; Vianney Denis; Chaolun Allen Chen PLOS ONE 16(10), e0258181
192021Scleractinian diversity in the upper mesophotic zone of Ludao (Taiwan): a museum collection with new records from Taiwanese watersDe Palmas, Stéphane; Denis, Vianney; Soto, Derek; Lin, Yuting Vicky; Ho, Ming-Jay ; Chen, Chaolun Allen Marine Biodiversity 51, 80
202021Portraying Gradients of Structural Complexity in Coral Reefs Using Fine-Scale Depth ProfilesLauriane Ribas-Deulofeu; Pierre-Alexandre Château; Vianney Denis; Chaolun Allen Chen Frontiers in Marine Science 8, 675853
212021Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)Lauriane Ribas-Deulofeu; Vianney Denis; Pierre-Alexandre Château; Chaolun Allen Chen​ PEERJ 9, e11744
222021Quantifying Coral Reef Resilience to Climate Change and Human Development: An Evaluation of Multiple Empirical FrameworksAshley H Y Bang; Chao-Yang Kuo; Colin Kuo-Chang Wen; Khah-Leng Cherh; Ming-Jay Ho ; Nien-Yun Cheng; Yen-Chia Chen; Chaolun Allen Chen Frontiers in Marine Science 7, 610306
232021Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral‐killing sponge, Terpios hoshinotaChen, Yu-Hsiang; Chen, Hsing-Ju; Yang, Cheng-Yu; Shiu, Jia-Ho; Hoh, Daphne Z.; Chiang, Pei-Wen; Chow, Wenhua Savanna; Chen, Chaolun Allen ; Shih, Tin-Han; Lin, Szu-Hsien; Yang, Chi-Ming ; Reimer, James Davis; Hirose, Euichi; Iskandar, Budhi Hascaryo; Huang, Hui; Schupp, Peter J.; Tan, Chun Hong James; Yamashiro, Hideyuki; Liao, Ming-Hui; Tang, Sen-Lin Environmental Microbiology 24(3), 1308-1325
242020Fishing pressure occurs down to the lower mesophotic coral ecosystem in Lyudao, TaiwanMing-Jay Ho ; Chao-Yang Kuo; Hung-Yi Wu; Ming-Shiou Jeng ; Shiahn-Wern Shyue; Chaolun Allen Chen Galaxea, Journal of Coral Reef Studies 22(1), 29-30
252020Correction: Keshavmurthy, S., et al. Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan). Journal of Marine Science and Engineering 2019, 7, 338Shashank Keshavmurthy; Chao-Yang Kuo; Ya-Yi Huang; Rodrigo Carballo-Bolaños; Pei-Jei Meng; Jih-Terng Wang; Chaolun Allen Chen Journal of Marine Science and Engineering 8(12), 964
262020Physiological plasticity of corals to temperature stress in marginal coral communitiesShashank Keshavmurthy; Morgan Beals; Hernyi Justin Hsieh; Kwang-Sik Choi; Chaolun Allen Chen Science of The Total Environment 758, 143628
272020Spatial heterogeneity of coral reef benthic communities in KenyaJuliet Furaha Karisa; David Obare Obura; Chaolun Allen Chen PLOS ONE 15(8), e0237397
282020Demographic census confirms a stable population of the critically-endangered caryophyllid coral Polycyathus chaishanensis (Scleractinia; Caryophyllidae) in the Datan Algal Reef, TaiwanChao-Yang Kuo; Shashank Keshavmurthy; Aichi Chung; Ya-Yi Huang; Sung-Yin Yang; Yei-Chia Chen; Chaolun Allen Chen SCIENTIFIC REPORTS 10, 10585
292020Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleachingYa-Yi Huang; Rodrigo Carballo-Bolaños; Chao-Yang Kuo; Shashank Keshavmurthy; Chaolun A. Chen SCIENTIFIC REPORTS 10, 7808
302020Specificity trumps flexibility—location-based stable associations between Symbiodiniaceae genera and Platygyra verweyi (Scleractinia; Merulinidae)Shashank Keshavmurthy​; Hwee Sze Tee​; Kuo-Wei Kao; Jih-Terng Wang​; Chaolun Allen Chen​ PEER J 8, e8791
312020The Origin of the Subtropical Coral Alveopora japonica (Scleractinia: Acroporidae) in High-Latitude EnvironmentsJi Hyoun Kang; Ji Eun Jang; Jae Hwan Kim; Sangil Kim; Shashank Keshavmurthy; Sylvain Agostini; James D. Reimer; Chaolun Allen Chen ; Kwang-Sik Choi; Sang Rul Park; Hyuk Je LeeFRONTIERS IN ECOLOGY AND EVOLUTION 8, 12
322019Thermal Stress and Resilience of Corals in a Climate-Changing WorldRodrigo Carballo-Bolaños; Derek Soto; Chaolun Allen Chen Journal of Marine Science and Engineering 8(1), 15
332019Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan)Shashank Keshavmurthy; Chao-Yang Kuo; Ya-Yi Huang; Rodrigo Carballo-Bolaños; Pei-Jei Meng; Jih-Terng Wang; Chaolun Allen Chen Journal of Marine Science and Engineering 7(11), 388
342019The coral Platygyra verweyi exhibits local adaptation to long-term thermal stress through host-specific physiological and enzymatic responseJih-Terng Wang; Yu-Ting Wang; Shashank Keshavmurthy; Pei-Jei Meng; Chaolun Allen Chen Scientific Reports 9, 13492
352019Social–environmental drivers inform strategic management of coral reefs in the AnthropoceneEmily S. Darling; Tim R. McClanahan; Joseph Maina; Georgina G. Gurney; Nicholas A. J. Graham; Fraser Januchowski-Hartley; Joshua E. Cinner; Camilo Mora; Christina C. Hicks; Eva Maire; Marji Puotinen; William J. Skirving; Mehdi Adjeroud; Gabby Ahmadia; Rohan Arthur; Andrew G. Bauman; Maria Beger; Michael L. Berumen; Lionel Bigot; Jessica Bouwmeester; Ambroise Brenier; Tom C. L. Bridge; Eric Brown; Stuart J. Campbell; Sara Cannon; Bruce Cauvin; Chaolun Allen Chen ; Joachim Claudet; Vianney Denis; Simon Donner; Estradivari; Nur Fadli; David A. Feary; Douglas Fenner; Helen Fox; Erik C. Franklin; Alan Friedlander; James Gilmour; Claire Goiran; James Guest; Jean-Paul A. Hobbs; Andrew S. Hoey; Peter Houk; Steven Johnson; Stacy D. Jupiter; Mohsen Kayal; Chao-yang Kuo; Joleah Lamb; Michelle A. C. Lee; Jeffrey Low; Nyawira Muthiga; Efin Muttaqin; Yashika Nand; Kirsty L. Nash; Osamu Nedlic; John M. Pandolfi; Shinta Pardede; Vardhan Patankar; Lucie Penin; Lauriane Ribas-Deulofeu; Zoe Richards; T. Edward Roberts; Ku’ulei S. Rodgers; Che Din Mohd Safuan; Enric Sala; George Shedrawi; Tsai Min Sin; Patrick Smallhorn-West; Jennifer E. Smith; Brigitte Sommer; Peter D. Steinberg; Makamas Sutthacheep; Chun Hong James Tan; Gareth J. Williams; Shaun Wilson; Thamasak Yeemin; John F. Bruno; Marie-Josée Fortin; Martin Krkosek; David MouillotNATURE ECOLOGY & EVOLUTION 3(9), 1341-1350
362019Lonely giant on the sand: unexpected massive Taiwanese coral, Polycyathus chaishanensis in the Datan algal reef demands a conservation focusChao-Yang KUO; Aichi CHUNG; Shashank KESHAVMURTHY; Ya-Yi HUANG; Sung-Yin YANG; Chaolun Allen Chen Galaxea, Journal of Coral Reef Studies 21(1), 11-12
372019New record of the encrusting alga Ramicrusta textilis overgrowing corals in the lagoon of Dongsha Atoll, South China SeaCarolin Nieder; Pin-Chen Chen; Chen; Chaolun Allen Chen ; Shao-Lun LiuBulletin of Marine Science 95(3), 459-462
382019Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimesRodrigo Carballo-Bolaños; Vianney Denis; Ya-Yi Huang; Shashank Keshavmurthy; Chaolun Allen Chen PLOS ONE 14(6), e0218801
392019Citizen science meets integrated taxonomy to uncover the diversity and distribution of Corallimorpharia in SingaporeRen Min Oh; Mei Lin Neo; Nicholas Wei Liang Yap; Sudhanshi Sanjeev Jain; Ria Tan; Chaolun Allen Chen ; Danwei HuangRAFFLES BULLETIN OF ZOOLOGY 67, 306-321
402019Filamentous calcareous alga provides substrate for coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll, TaiwanCarolin Nieder; Chen-Pan Liao; Chaolun Allen Chen ; Shao-Lun LiuPLOS ONE 14(5), e0200864
412019Association between massive Porites and the hidden hermit crab, Calcinus latens (Decapoda, Diogenidae)Shashank Keshavmurthy; Sung-Yin Yang; Chun-Yu Su; Yu-Wen Chiu; Chaolun Allen Chen BULLETIN OF MARINE SCIENCE 95(1), 115-116
422018The Scleractinia (Cnidaria: Anthozoa) of Abu-Musa and Sirri Islands, Persian GulfParisa Alidoost Salimi; Pargol Ghavam Mostafavi; Chaolun Allen Chen ; Seyed Mohammad Reza Fatemi; Michel PichonZOOLOGICAL STUDIES 57, 56
432018Filamentous calcareous alga provides a substrate for coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll, TaiwanCarolin Nieder; Chaolun Allen Chen ; Shao-Lun LiubioRxiv, 363796
442018Risk‐sensitive planning for conserving coral reefs under rapid climate changeHawthorne L. Beyer; Emma V. Kennedy; Maria Beger; Chaolun Allen Chen ; Joshua E. Cinner; Emily S. Darling; C. Mark Eakin; Ruth D. Gates; Scott F. Heron; Nancy Knowlton; David O. Obura; Stephen R. Palumbi; Hugh P. Possingham; Marji Puotinen; Rebecca K. Runting; William J. Skirving; Mark Spalding; Kerrie A. Wilson; Sally Wood; John E. Veron; Ove Hoegh‐GuldbergConservation Letters 11(6), e12587
452018Repeated and Prolonged Temperature Anomalies Negate Symbiodiniaceae Genera Shuffling in the Coral Platygyra verweyi (Scleractinia; Merulinidae)Kuo-Wei Kao; Shashank Keshavmurthy; Cing-Hsin Tsao; Jih-Terng Wang; Chaolun Allen Chen ZOOLOGICAL STUDIES 57, 55
462018Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China SeaSung-Yin Yang; Hsing-Ju Chen; Ming-Jay Ho ; Yen-Jia Chen; Ya-Yi Huang; Wenhua Savanna Chow; Sen-Lin Tang ; Ming-Shiou Jeng ; Chaolun Allen Chen BULLETIN OF MARINE SCIENCE 94(4), 1543-1544
472018Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, TaiwanStephane De Palmas; Derk R. Sato; Vianney Denis; Min-Jay Ho ; Chaolun Allen Chen PeerJ 6, e5797
482018Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in TaiwanDerek Soto; Stephane De Palmas; Ming Jay Ho ; Vianney Denis; Chaolun Allen Chen PLoS One 13(8), e0202586
492018BioTIME: A database of biodiversity time series for the AnthropoceneMaria Dornelas; Laura H. Antão; Faye Moyes; Amanda E. Bates; Anne E. Magurran; Dušan Adam; Asem A. Akhmetzhanova; Ward Appeltans; José Manuel Arcos; Haley Arnold; Narayanan Ayyappan; Gal Badihi; Andrew H. Baird; Miguel Barbosa; Tiago Egydio Barreto; Claus Bässler; Alecia Bellgrove; Jonathan Belmaker; Lisandro Benedetti-Cecchi; Brian J. Bett; Anne D. Bjorkman; Magdalena Błażewicz; Shane A. Blowes; Christopher P. Bloch; Timothy C. Bonebrake; Susan Boyd; Matt Bradford; Andrew J. Brooks; James H. Brown; Helge Bruelheide; Phaedra Budy; Fernando Carvalho; Edward Castañeda-Moya; Chaolun Allen Chen ; John F. Chamblee; Tory J. Chase; Laura Siegwart Collier; Sharon K. Collinge; Richard Condit; Elisabeth J. Cooper; J. Hans C. Cornelissen; Unai Cotano; Shannan Kyle Crow; Gabriella Damasceno; Claire H. Davies; Robert A. Davis; Frank P. Day; Steven Degraer; Tim S. Doherty; Timothy E. Dunn; Giselda Durigan; J. Emmett Duffy; Dor Edelist; Graham J. Edgar; Robin Elahi; Sarah C. Elmendorf; Anders Enemar; S. K. Morgan Ernest; Rubén Escribano; Marc Estiarte; Brian S. Evans; Tung-Yung Fan; Fabiano Turini Farah; Luiz Loureiro Fernandes; Fábio Z. Farneda; Alessandra Fidelis; Robert Fitt; Anna Maria Fosaa; Geraldo Antonio Daher Correa Franco; Grace E. Frank; William R. Fraser; Hernando García; Roberto Cazzolla Gatti; Or Givan; Elizabeth Gorgone-Barbosa; William A. Gould; Corinna Gries; Gary D. Grossman; Julio R. Gutierréz; Stephen Hale; Mark E. Harmon; John Harte; Gary Haskins; Donald L. Henshaw; Luise Hermanutz; Pamela Hidalgo; Pedro Higuchi; Andrew Hoey; Gert Van Hoey; Annika Hofgaard; Kristen Holeck; Robert D. Hollister; Richard Holmes; Mia Hoogenboom; Chih-hao Hsieh; Stephen P. Hubbell; Falk Huettmann; Christine L. Huffard; Allen H. Hurlbert; Natália Macedo Ivanauskas; David Janík; Ute Jandt; Anna Jażdżewska; Tore Johannessen; Jill Johnstone; Julia Jones; Faith A. M. Jones; Jungwon Kang; Tasrif Kartawijaya; Erin C. Keeley; Douglas A. Kelt; Rebecca Kinnear; Kari Klanderud; Halvor Knutsen; Christopher C. Koenig; Alessandra R. Kortz; Kamil Král; Linda A. Kuhnz; Chao-Yang Kuo; David J. Kushner; Claire Laguionie-Marchais; Lesley T. Lancaster; Cheol Min Lee; Jonathan S. Lefcheck; Esther Lévesque; David Lightfoot; Francisco Lloret; John D. Lloyd; Adrià López-Baucells; Maite Louzao; Joshua S. Madin; Borgþór Magnússon; Shahar Malamud; Iain Matthews; Kent P. McFarland; Brian McGill; Diane McKnight; William O. McLarney; Jason Meador; Peter L. Meserve; Daniel J. Metcalfe; Christoph F. J. Meyer; Anders Michelsen; Nataliya Milchakova; Tom Moens; Even Moland; Jon Moore; Carolina Mathias Moreira; Jörg Müller; Grace Murphy; Isla H. Myers-Smith; Randall W. Myster; Andrew Naumov; Francis Neat; James A. Nelson; Michael Paul Nelson; Stephen F. Newton; Natalia Norden; Jeffrey C. Oliver; Esben M. Olsen; Vladimir G. Onipchenko; Krzysztof Pabis; Robert J. Pabst; Alain Paquette; Sinta Pardede; David M. Paterson; Raphaël Pélissier; Josep Peñuelas; Alejandro Pérez-Matus; Oscar Pizarro; Francesco Pomati; Eric Post; Herbert H. T. Prins; John C. Priscu; Pieter Provoost; Kathleen L. Prudic; Erkki Pulliainen; B. R. Ramesh; Olivia Mendivil Ramos; Andrew Rassweiler; Jose Eduardo Rebelo; Daniel C. Reed; Peter B. Reich; Suzanne M. Remillard; Anthony J. Richardson; J. Paul Richardson; Itai van Rijn; Ricardo Rocha; Victor H. Rivera-Monroy; Christian Rixen; Kevin P. Robinson; Ricardo Ribeiro Rodrigues; Denise de Cerqueira Rossa-Feres; Lars Rudstam; Henry Ruhl; Catalina S. Ruz; Erica M. Sampaio; Nancy Rybicki; Andrew Rypel; Sofia Sal; Beatriz Salgado; Flavio A. M. Santos; Ana Paula Savassi-Coutinho; Sara Scanga; Jochen Schmidt; Robert Schooley; Fakhrizal Setiawan; Kwang-Tsao Shao ; Gaius R. Shaver; Sally Sherman; Thomas W. Sherry; Jacek Siciński; Caya Sievers; Ana Carolina da Silva; Fernando Rodrigues da Silva; Fabio L. Silveira; Jasper Slingsby; Tracey Smart; Sara J. Snell; Nadejda A. Soudzilovskaia; Gabriel B. G. Souza; Flaviana Maluf Souza; Vinícius Castro Souza; Christopher D. Stallings; Rowan Stanforth; Emily H. Stanley; José Mauro Sterza; Maarten Stevens; Rick Stuart-Smith; Yzel Rondon Suarez; Sarah Supp; Jorge Yoshio Tamashiro; Sukmaraharja Tarigan; Gary P. Thiede; Simon Thorn; Anne Tolvanen; Maria Teresa Zugliani Toniato; Ørjan Totland; Robert R. Twilley; Gediminas Vaitkus; Nelson Valdivia; Martha Isabel Vallejo; Thomas J. Valone; Carl Van Colen; Jan Vanaverbeke; Fabio Venturoli; Hans M. Verheye; Marcelo Vianna; Rui P. Vieira; Tomáš Vrška; Con Quang Vu; Lien Van Vu; Robert B. Waide; Conor Waldock; Dave Watts; Sara Webb; Tomasz Wesołowski; Ethan P. White; Claire E. Widdicombe; Dustin Wilgers; Richard Williams; Stefan B. Williams; Mark Williamson; Michael R. Willig; Trevor J. Willis; Sonja Wipf; Kerry D. Woods; Eric J. Woehler; Kyle Zawada; Michael L. ZettlerGLOBAL ECOLOGY AND BIOGEOGRAPHY 27(7), 760-786
502018Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation SequencingSung-Yin Yang; Wai-Ling Fong; Wenhua Savanna Chow; Chia-Min Hsu; Chia-Ling Carynn Chan; Shashank Keshavmurthy; Chaolun Allen Chen ZOOLOGICAL STUDIES 57, 32
512018Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations.Sonny T. M. Lee; Shashank Keshavmurthy; Silvia Fontana; Mezaki Takuma; Wen-Hua Chou; Chaolun Allen Chen BMC research notes 11, 119
522017Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphyllidae; clade V)Katrina S. Luzon; Mei-Fang Lin; Ma. Carmen A. Ablan Lagman; Wilfredo Roehl Y. Licuanan; Chaolun Allen Chen PeerJ 5, e4074
532017Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal historyJia-Ho Shiu; Shashank Keshavmurthy; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen ; Sen-Lin Tang SCIENTIFIC REPORTS 7(1), 14933
542017Diverse responses of Symbiodinium types to menthol and DCMU treatmentJih-Terng Wang​; Shashank Keshavmurthy; Tzu-Ying Chu; Chaolun Allen Chen PeerJ 5, e3843
552017Unprecedented calcareous algal reefs in northern Taiwan merit high conservation priorityChing-Yu Liou; Sung-Yin Yang; Chaolun Allen Chen CORAL REEFS 36(4), 1253
562017A functional approach to the structural complexity of coral assemblages based on colony morphological featuresVianney Denis; Lauriane Ribas-Deulofeu; Nicolas Sturaro; Chao-Yang Kuo; Chaolun Allen Chen SCIENTIFIC REPORTS 7(1), 9849
572017Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in CoralsYang, S-H; Tseng, C-H; Huang, C-R; Chen, C-P; Tandon, K; Lee, STM; Chiang, P-W; Shiu, J-H; Chen, CA ; Tang, S-LFrontiers in Microbiology 8, 1094
582017Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China SeaJames Davis Reimer; Maria Eduarda Alves Santos; Hiroki Kise; Mei Lin Neo; Chaolun Allen Chen ; Keryea SoongRegional Studies in Marine Science 12, 49-57
592017Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa)Yaoyang Chuang; Marcelo Kitahara; Hironobu Fukami; Dianne Tracey; David J. Miller; Chaolun Allen Chen ZOOLOGICAL STUDIES 56, 9
602017Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)Mei-Fang Lin; Aurelie Moya; Hua Ying; Chaolun Allen Chen ; Ira Cooke; Eldon E. Ball; Sylvain Forêt; David J. MillerGenome Biology and Evolution 9(1), 150-160
612017Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China SeaShashank Keshavmurthy; Kuo-Hsun Tang; Chia-Min Hsu; Chai-Hsia Gan; Chao-Yang Kuo; Keryea Soong; Hong-Nong Chou; Chaolun Allen Chen PeerJ. 5, e2871
622016Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new speciesRoberto Arrigoni; Michael L Berumen; Chaolun Allen Chen ; Tullia I Terraneo; Andrew H Baird; Claude Payri; Francesca BenzoniMOLECULAR PHYLOGENETICS AND EVOLUTION 105, 146-159
632016Genetic evidence of peripheral isolation and low diversity in marginal populations of the Acropora hyacinthus complexG. Suzuki; S. Keshavmurthy; T. Hayashibara; C. C. Wallace; Y. Shirayama; C. A. Chen ; H. FukamiCORAL REEFS 35(4), 1419-1432
642016Corallimorpharians are not “naked corals”: insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analysesMei Fang Lin; Wen Hwa Chou; Marcelo V Kitahara; Chao Lun Allen Chen ; David John Miller; Sylvain Foret​PeerJ 4, e2463
652016When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genusRoberto Arrigoni; Francesca Benzoni; Danwei Huang; Hironobu Fukami; Chaolun Allen Chen ; Michael L. Berumen; Mia Hoogenboom; Damian P. Thomson; Bert W. Hoeksema; Ann F. Budd; Yuna Zayasu; Tullia I. Terraneo; Yuko F. Kitano; Andrew H. BairdCONTRIBUTIONS TO ZOOLOGY 85(4), 387-422
662016DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigasS.-T. Hsiao; S.-C. Chuang; K.-S. Chen; P.-H. Ho; C.-L. Wu; C. A. Chen Scientific Reports 6, 34057
672016Population dynamics of a high-latitude coral Alveopora japonica Eguchi from Jeju Island, off the southern coast of KoreaChristophe Vieira; Shashank Keshavmurthy; Se-Jong Ju; Kiseong Hyeong; Inah Seo; Chang-Keun Kang; Hyun-Ki Hong; Chaolun Allen Chen ; Kwang-Sik ChoiMARINE AND FRESHWATER RESEARCH 67, 594-604
682016Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata.Wen-Ming Chen; Li-Ping Liu; Chaolun Allen Chen ; Jih-Terng Wang; Shih-Yi SheuINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66, 4077-4084
692016Wall of orange cup coral, Tubastraea coccinea, at the inlet breakwaters of a nuclear power plant, southern TaiwanM.-J. Ho; C.-M. Hsu; C. A. Chen Marine Biodiversity 47, 163-164
702016Conservation of reef corals in the South China Sea based on species and evolutionary diversityD. Huang; B. W. Hoeksema; A. Yang Amri; P. O. Ang; C. A. Chen ; H. Huang; D. J. W. Lane; W. Y. Licuanan; Ouk Vibol; S. T. Vo; T. Yeemin; L. M. ChouBIOLOGICAL CONSERVATION 25(2), 331-344
712016Spatial patterns and environmental settings of non-reefal coral communities across the Tropics of Cancer in the Penghu Archipelago (Pescadores), TaiwanH. J. Hsieh; C. K-C. Wen; Y.-C. Huang; K.-S. Chen; C.-F. Dai; C. A. Chen ZOOLOGICAL STUDIES 55, 45
722015Population dynamics of a high latitude coral Alveopora japonica Eguchi from Jeju Island, off the south coast of KoreaC. Vieira; K. Shashank; S.-J. Ju; K. Hyeong; I. Seo; C.-K. Kang; H.-K. Hong; Chaolun Allen Chen ; Kwang-Sik ChoiMARINE AND FRESHWATER RESEARCH 67(5), 594-604
732015Physiological Outperformance at the Morphologically-Transformed Edge of the Cyanobacteriosponge Terpios hoshinota (Suberitidae: Hadromerida) when Confronting Opponent CoralsJ.-T. Wang; C.-M. Hsu; C.-Y. Kuo; P.-J. Meng; C. A. Chen PLoS One 10(6), e0131509
742015Massively parallel sequencing (MPS) assays for sequencing mitochondrial genomes: the phylogenomic implications for Acropora staghorn corals (Scleractinia; Acroporidae)Shang-Yin Vanson Liu; Chia-Ling Carynn Chan; Hernyi Justin Hsieh; Silvia Fontana; Carden C. Wallace; Chaolun Allen Chen MARINE BIOLOGY 162, 1383-1392
752015Integrated assessment of sustainable marine cage culture through system dynamics modelingPierre-Alexandre Château; Yuan-Chao Angelo Huang; Chaolun Allen Chen ; Yang-Chi ChangECOLOGICAL MODELLING 299, 140-146
762015Hidden ecosystem function of rabbitfishes? Siganus fuscescens feeds on the soft coral, Sarcophyton sp.F.-W. Kuo; C.-Y. Kuo; T.-Y. Fan; M.-C. Liu; C. A. Chen CORAL REEFS 34(1), 57
772015The complete mitochondrial genomes of Pseudosiderastrea spp (Cnidaria, Scleractinia, Siderastreidae).Y.-Y. Chuang; C. A. Chen Mitochondrial DNA 27(6), 4065-4066
782015Recruitment of the subtropical coral Alveopora japonica in the temperate waters of Jeju Island, South KoreaVianney Denis; Lauriane Ribas-Deulofeu; Mathilde Loubeyres; Stéphane De Palmas; Sung-Jin Hwang; Seonock Woo; Jun-Im Song; Chaolun Allen Chen BULLETIN OF MARINE SCIENCE 91(1), 85-96
792014Extension of the known distribution and depth range of the scleractinian coral Psammocora stellata: first record from a Taiwanese mesophotic reefVianney Denis; Stéphane De Palmas; Francesca Benzoni; Chaolun Allen Chen MARINE BIODIVERSITY 10.1007/s12526-014-0299-z
80201402.知識饗宴「讓珊瑚告訴你海洋有多大的麻煩」陳昭倫 
812014First record of the coral-killing sponge Terpios hoshinota in the Maldives and Indian Ocean.S. Montano; W.-H. Chou; C. A. Chen ; P Galli; J. D. ReimerBULLETIN OF MARINE SCIENCE 91(1), 97-98
822014Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae)R. Arrigoni; ZT Richards; CA Chen ; AH Baird; F BenzoniCONTRIBUTIONS TO ZOOLOGY 83(3),195-215
832013Alveopora japonica beds thriving under kelpDenis, V; Chen, CA ; Song, JI; Woo, SCORAL REEFS 32, 503
842013Coral Reefs of the Chagos Archipelago, Indian Ocean.Sheppard, Charles R. C.; Ateweberhan, Mebs; Chen, Allen C. ; Harris, Alasdair; Jones, Rachel; Keshavmurthy, Shashank; Lundin, Carl; Obura, David; Purkis, Sam; Raines, Peter; Riegl, Bernhard; Schleyer, Michael H.; Sheppard, Anne L. S.; Tamelander, Jerker; Turner, John R.; Visram, Shakil; Yang, Sung-YinCoral Reefs of the United Kingdom Overseas Territories, Coral Reefs of the World 4. (Netherlands : Springer Netherlands)
852013British Indian Ocean Territory (the Chagos Archipelago): Setting, Connections and the Marine Protected AreaSheppard, Charles R. C.; Bowen, Brian W.; Chen, Allen C. ; Craig, Matthew T.; Eble, Jeff; Fitzsimmons, Nancy; Gan, Chai-hsia; Gaither, Michelle R.; Gollock, Matthew; Keshavmurthy, Shashank; Koldewey, Heather; Mortimer, Jeanne A.; Obura, David; Pfeiffer, Miriam; Rogers, Alex D.; Sheppard, Anne L. S.; Vogler, Catherine; Wörheide, Gert; Yang, Ming-Che; Yesson, ChrisCoral Reefs of the United Kingdom Overseas Territories, Coral Reefs of the World 4. (Netherlands : Springer Netherlands)
862013DNA barcoding reveals the coral “laboratory-rat”, Stylophora pistillata encompasses multiple identitiesKeshavmurthy, S.; Yang, S. -Y.; Alamaru, A.; Chuang, Y. -Y.; Pichon, M.; Obura, D.; Fontana, S.; De Palmas, S.; Stefani, F.; Benzoni, F.; MacDonald, A.; Noreen, A. M. E.; Chen, C.; Wallace, C. C.; Pillay, R. M.; Denis, V.; Amri, A. Y.; Reimer, J. D.; Mezaki, T.; Sheppard, C.; Loya, Y.; Abelson, A.; Mohammed, M. S.; Baker, A. C.; Mostafavi, P. G.; Suharsono, B. A.; C. A. Chen Scientific Reports 3, 1520
872013Coverage, diversity and functionality of a high latitude coral community (Tatsukushi, Shikoku Island, Japan)Denis, V.; Mezaki, T.; Tanaka, K.; Kuo, C. -Y.; del Palmas, S.; Keshavmurthy, S.; Chen, C. A. PLoS One 8(1): e54330
882013Host genetic connectivity and diversity of Symbiodinium D subclades in a stress-tolerant scleractinian coral, Oulastrea crispata, in the West PacificLien, Y. -T.; Keshavmurthy, S.; Nakano, Y.; Plathong, S.; Huang, H.; Fukami, H.; Yamashita, Y.; Chen, C. A. MARINE ECOLOGY-PROGRESS SERIES 473, 163-177
892012Molecular evidence reveals low diversity of hydroids associated with AcroporaFotana, S.; Keshavmurthy, S.; Hsieh, H. J.; Denis, V.; Kuo, C. Y.; Hsui, C. M.; Chen, C. A. PLoS One e50130
902012Physiological and biochemical performances of menthol-induced aposymbiotic coralsWang, J. -T.; Chen, Y. -Y.; Tew, K. S.; Meng, P. -J.; Chen, C. A. PLoS One 7(9), e46406
912012Recurrent disturbances and the degradation of hard coral communities in TaiwanKuo, C. -Y.; Meng, P. -J.; Ho, P. -H.; Wang, J. -T.; Chen, J. -P.; Chiu, Y. -W.; Lin, H. -J; Chang, Y. -C.; Fan, T. -Y.; Baird, A. H.; Chen, C. A. PLoS One 7(8), e44364
922012Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areasKeshavmurthy, S.; Lan, C. -H.; Hsui, C. -M.; Meng, P. -J.; Wang, J. -T.; Chen, C. A. Molecular Ecology 21(17), 4393-4407
932012Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implicationsLin, Mei-Fang; Kitahara, Marcelo Visentini; Tachikawa, Hiroyuki; Fukami, Hironobu; Miller, David John; Chen, Chaolun Allen Molecular Phylogenetics and Evolution 65(1), 323-328
942012Diversity and distribution of symbiodinium associated with seven common coral species in the Chagos Archipelago, central Indian OceanYang, S. -Y.; Keshavmurthy, S.; Obura, D.; Shappard, C.; Visram, S.; Chen, C. A. PLoS One 7(5), e35836
952012Coral-killing sponge, Terpios hoshinota, releases larvae harbouring cyanobacterial symbionts: an implication of dispersalWang, J. -T.; Hirose, E.; Hsu, C. -M.; Chen, Y. -Y.; Meng, P. -J.; Chen, C. A. Zoological Studies 51(3), 314-320
962012Influence of seasonal monsoon winds on the water quality around a marine cage-culture zone in a semi-closed embayment in TaiwanHuang, Y. A.; Huang, S. -C.; Meng, P. -J.; Hsieh, H. J.; Chen, C. A. Marine Pollution Bulletin 64(4), 851-860
972012Larvae development of the fertilized “pseudo-gynodiecious” eggs in Galaxea fascicularisKeshavmurthy, S.; Hsu, C. -M.; Kuo, C. -Y.; Dennis, V.; Leung, K. -L. J.; Fronta, S.; Hsieh, H. J.; Tsai, W. -S.; Su, W. -C.; Chen, C. A. Zoological Studies 51(2),143-149
982012Determination of the thermal tolerance of Symbiodinium using the activation energy for inhibiting photosystem II activityWang, J. T.; Meng, P. J.; Chen, Y. Y.; Chen, C. A. Zoological Studies 51(2), 137-142
992012Diverse interactions between corals and the coral-killing sponge, Terpios hoshinota (Suberitidae; Hadromerida)Wang, J. -T.; Chen, Y. -Y.; Meng, P. -J.; Sune, Y. -H.; Hsu, C. -M.; Wei, K. -Y.; Chen, C. A. Zoological Studies 51(2),150-159
1002012A new unusual shallow-water species, Polycyathus chaishanensis sp. nov. (Scleractinia: Caryophylliidae), from Chaishan, Kaohsiung, TaiwanLin, M. -F.; Kitahara, M.; Tachikawa, H.; Keshavmurthy, S.; Chen, C. A. Zoological Studies 51(2), 213-221
1012012Reproductive Isolation among Acropora Species (Scleractinia: Acroporidae) in a Marginal Coral AssemblageWei, N. V.; Hsieh, H. J.; Dai, C. -F.; Wallace, C. C.; Baird, A. H.; Chen, C. A. Zoological Studies 51(1), 85-92
1022012Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to TaiwanPichon, M.; Chuang, Y. -Y.; Chen, C. A. Zoological Studies 51(1), 93-98
1032012Temporal and Spatial Variations in Symbiont Communities of Catch Bowl Coral Isopora palifera (Scleractinia: Acroporidae) on Reefs in Kenting National Park, TaiwanChia-Min Hsu; Shashank Keshavmurthy; Vianney Denis; Chao-Yang Kuo; Jih-Terng Wang; Pei-Jie Meng; Chaolun Allen Chen Zoological studies 51(8), 1343-1353
1042012Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected areaSheppard, C. R. C.; Ateweberhan, M.; Bowen, B. W.; Carr, P.; Chen, C. A. ; Clubbe, C.; Craig, M. T.; Ebinghaus, R.; Eble, J.; Fitzsimmons, N.; Gaither, M. R.; Gan, C-H.; Gollock, M.; Guzman, N.; Graham, N. A. J.; Harris, A.; Jones, R.; Keshavmurthy, S.; Koldewey, H.; Lundin, C. G.; Mortimer, J. A.; Obura, D.; Pfeiffer, M.; Price, A. R. G.; Purkis, S.; Raines, P.; Readman, J. W.; Riegl, B.; Rogers, A.; Schleyer, M.; Seaward, M. R. D; Sheppard, A. L. S.; Tamelander, J.; Turner, J. R.; Visram, S.; Vogler, C.; Vogt, S.; Wolschke, H.; Yang, J. M-C.; Yang, S-Y.; Yesson, C.AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS  22, 232-261
1052012Dark survival of Oulastrea crispataDenis, V; Leung, JKL; Hsu, CM; Hsieh, HJ; Tsai, WS; Chen, CA Galaxea: Journal of Coral Reefs Studies 14, 1-2
1062012Changes in sedimentation, sediment characteristics, and benthic macrofaunal assemblages around marine cage culture under seasonal monsoon scales in a shallow-water bay in TaiwanHuang, Y. A.; Huang, S. -C.; Meng, P. -J.; Hsieh, H. J.; Chen, C. A. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY 422-423, 55-63
1072011Establishment of a No-take Area (NTA) could not guarantee the preservation of coral Communities in Chinwan Inner Bay, Penghu, TaiwanHsieh, H. J.; Baird, A.; Tsai, W. -S.; Su, W. -C.; Chen, C. A. ZOOLOGICAL STUDIES 50(4), 443-453
1082011Damage to the reefs of Siangjiao Bay marine protected area in Kenting National Park, Taiwan during Typhoon MorakotKuo, C. -Y.; Meng, P. -J.; Ho, P. -H.; Wang, J. -T.; Chen, J. -P.; Chiu, Y. -W.; Lin, H. -J; Chang, Y. -C.; Fan, T. -Y.; Chen, C. A. ZOOLOGICAL STUDIES 50(1),85
1092011Bacteria associated with an encrusting sponge (Terpios hoshinota) and the corals partially covered by the spongeTang, Sen-Lin ; Hong, Mei-Jhu; Liao, Ming-Hui; Jane, Wann-Neng; Chiang, Pei-Wen; Chen, Chung-Bin; Chen, Chaolun Allen ENVIRONMENTAL MICROBIOLOGY 13(5), 1179-1191
1102011Seventy-four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria; Anthozoa)Lin, M. -F.; Luzon, K. S.; Licuanan, W. Y.; Ablan-Lagman, M. C.; Chen, C. A. Zoological Studies 50(4), 513-524
1112011Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)Stafani, F.; Benzoni, F.; Yang, S. -Y.; Pichon, M.; Chen, C. A. Coral Reefs 30(4), 1033-1049
1122011Latitudinal gradient of morphological variation in zebra coral, Oulastrea crispata (Scleractinia; Faviidae) in the West PacificChen, K. -S.; Hsieh, H. J.; Keshavmurthy, S.; Leung, J. K. L.; Lien, I. -T.; Nakano, Y.; Plathong, S.; Huang, H; Chen, C. A. ZOOLOGICAL STUDIES 50(1), 43-52
1132010The dynamics of microbial parternships in the coral Isopora paliferaChen, Chung-Pin; Tseng, Ching-Hung; Chen, Chaolun Allen ; Tang, Sen-Lin ISME Journal 5(4), 728-740
1142010Paracoccus stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillataSheu, S. -Y.; Jiang, SR; Chen, C. A. ; Wang, JT; Chen, WMINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 61(9), 2221-2226
1152010Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillataSheu, S. -Y.; Jiang, SR; Chen, C. A. ; Wang, J. -T.; Chen, W. -MINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 61(9), 2180-2185
1162010Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora paliferaChen, M. -H.; Sheu, SY; Chen, C. A. ; Wang, JT; Chen, WMINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 61(5), 1138-1143
1172010Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculataYang, C. -S.; Chen, MH; Arun, AB; Chen, C. A. ; Wang, JT; Chen, WMINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 60(Pt 5), 1158-1162
1182010Shimia isoporae sp. nov., isolated from the reef-building coral Isopora paliferaChen, M. -H.; Sheu, SY; Chen, C. A. ; Wang, JT; Chen, WMINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 61(4), 823-827
1192010Genetic connectivity and historical demography of the blue barred parrotfish (Scarus ghobban) in the Western Indian OceanVisram, S.; Yang, M-C; Pillay, R. Moothien; Said, S.; Henriksson, O.; Grahn, M.; Chen, C. A. MARINE BIOLOGY 157(7), 1475-1487
1202010Comparative study of genetic utility of AAT and GT/CT microsatellites in staghorn coral, AcroporaTang, P. -C.; Wei, N. V.; Wallace, C. C.; Chen, C. A. ZOOLOGICAL STUDIES 49(5), 657-668
1212010An unexpectedly high Acropora species diversity in the inlet of a nuclear power plant within Kenting National Park, southern TaiwanTang, P. -C.; Hsu, C. -M.; Kuo, C. -Y.; Chen, C. A. ZOOLOGICAL STUDIES 49(1), 71
1222009Flectobacillus roseus sp nov., isolated from freshwater in TaiwanSheu, S. Y.; Chiu, T. F.; Cho, N. T.; Chou, J. H.; Sheu, D. S.; Arun, A. B.; Young, C. C.; Chen, C. A. ; Wang, J. T.; Chen, W. M.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59, 2546-2551
1232009Vogesella lacus sp nov., isolated from a soft-shell turtle culture pondChou, J. H.; Chou, Y. J.; Arun, A. B.; Young, C. C.; Chen, C. A. ; Wang,  J. T.; Chen, W. M.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59,2629-2632
1242009Andreprevotia lacus sp nov., isolated from a fish-culture pondSheu, S. Y.; Chiu, T. F.; Chou, J. H.; Sheu, D. S.; Arun, A. B.; Young, C. C.; Chen, C. A. ; Wang, J. T.; Chen, W. M.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59,2482-2485
1252009A Novel Dispersal Mechanism of a Coral-Threatening Sponge, Terpios hoshinota (Suberitidae, Porifera)Soong, K.; Yang, S. L.; Chen, C. A. ZOOLOGICAL STUDIES 48(5),596-596
1262009Comparative analyses of coding and noncoding DNA regions indicate that Acropora spp (Anthozoa; Scleractina) possess a similar evolutionary tempo of nuclear vs. mitochondrial genomes in plantsChen, I. P.; Chung, C. Y.; Chiou, C. Y.; Hsui, J. H.; Wei, N. V.; Wallace, C. C.; Muir, P.; Wu, H.; Chen, C. A. MARINE BIOTECHNOLOGY 11(1),141-152
1272009Is a Living Fossil about to Go Locally Extinct? No Mitochondrial Genetic Variation in Horseshoe Crab Juveniles Tachypleus tridentatus at Haomeiliao Nature Reserve, Budai, TaiwanYang, MC; Chen, CP ; Hsieh, HL ; Chen, CA Zoological Studies 48(6), 737
1282008Unique mitogenome in the scleractinian family Pocilloporidae (Scleractinia; Astrocoeniia)Chen, C.; Chiou, C. -Y.; Dai, C. -F.; Chen, C. A. Marine Biotechnology 10(5),538-553
1292008Analysis of Acropora muricata Calmodulin (CaM) indicates scleractinian coral possess the ancestral exon/intron organization of eumetazoan CaM geneChiou, C. -Y.; Chen, I-P.; Chen, C. -H.; Wei, N. V.; Wu, H.; Wallace, C. C.; Chen, C. A. Journal of Molecular Evolution 66,317-324
1302008The Complete mitochondrial genomes of needle corals, Seriatopora spp (Scleractinia; Pocilloporidae): idiosyncratic atp8 gene, duplicated tRNA-Trp, and the hypervariable regions for species phylogenies and recently diverged populationsChen, C.; Dai, C. -F.; Chiou, C. -Y.; Plathong, S.; Chen, C. A. Molecular Phylogenetics and Evolution 46,19-33
1312008Mitochondrial and nuclear gene suggest that stony corals are monophyletic but most of coral families are notFukami, H.; Chen, C. A. ; Budd, Ann F.; Collins, A.; Wallace, C. C.; Chuang, Y. -Y.; Chen, C.; Dai, C. -F.; Iwao, K.; Sheppard, C.; Knowlton, N.PLoS ONE 3 (9), e3222
1322008The smallest oocytes in the broadcasting actiniarians and unique lunar cycle of reproduction in a unisexual population of sea anemone, Aiptasia puchellaChen, C.; Soong, K.; Chen, C. A. Zoological Studies 47,37-45
1332007Relict Siderastrea savignyana in Kiunga National Marine Reserve, KenyaObura, D.; Chuang, Y. -Y.; Olendo, M.; Amiyo, N; Church, J.; Chen, C. A. ZOOLOGICAL STUDIES 46,427
1342007From the drawing board to the field: An example for establishing an MPA, in Penghu, TaiwanHsieh, H. J.; Chen, C. A. ; Dai, C. -F.; Ou, W. -H.; Tsai, W. -S.; Su, W. -C.AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS 17(6), 619-635
1352007Occurrence of the putatively heat-tolerant Symbiodinium phylotype D in high-latitudinal marginal coral communitiesLien, Y. -T.; Nakano, Y.; Plathong, S.; Fukami, H.; Wang, J. -T.; Chen, C. A. CORAL REEFS 26, 35-44
1362007Population Subdivision of the Tri-Spine Horseshoe Crab, Tachypleus tridentatus, in Taiwan StraitYang, M. -C.; Chen, C. A. ; Hsieh, H. -L. ; Chen, C. -P. Zoological Science 24(3), 219-224
1372007Recognition of separate genera within the large coral genus Acropora based on new morphological, reproductive and genetic evidence from A. togianensis, and elevation of the subgenus Isopora Studer 1878 to genus (Scleractinia: Astrocoeniidae; Acroporidae)Wallace, C. C.; Chen, C. A. ; Fukami, H.; Muir, P. R.CORAL REEFS 26, 231-239
1382007Unexpected coral diversity on breakwaters: potential refuges for depleting coral reefsWen, K. -C.; Hsui, C. -M.; Chen, K. -S.; Liao, M. -H.; Chen, C. -P.; Chen, C. A. CORAL REEFS 26,127
1392007Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian coralsFukami, H.; Chen, C. A. ; Chiou, C. -Y.; Knowlton, N.J. Mol. Evol. 64(5), 591-600
1402006台灣現行之漁業資源保育區檢討與重劃陳章波 ; 邵廣昭 ; 謝蕙蓮 ; 陳昭倫 ; 陳國勤 
1412006Analyses of the ribosomal internal transcribed spacers (ITS) and 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (Cnidaria; Scleractinian; Acroporidae)Wei, N. V.; Wallace, C. C.; Dai, C. -F.; Moothien Pillay, K. R.; Chen, C. A. Zoological Studies 45(3), 404-418
1422006Intraspecific genetic diversity of the endemic freshwater crab Candidiopotamon rathbunae (Decapoda, Brachyura, Potamidae) reflects five million years of geological history of TaiwanShih, H. -T.; Hung, H. -C.; Schubart, C. D.; Chen, C. A. ; Chang, H. -W.Journal of Biogeography 33, 980-989
1432006Day-time gamete-releasing from the reef-building coral, Pavona sp., in the Gulf of ThailandPlathong, S.; Baird, A.; Chen, C. A. ; Chanmethakul, T.; Suwonno, V.; Buahpet, P.; Soontornpitakkool, S.Coral Reefs 25, 72
1442005綠島暨澎湖青灣海洋保護區規劃計畫期末報告邵廣昭 ; 陳章波 ; 陳昭倫 ; 鄭明修 農委會漁業署委託,99頁
1452004海洋保護區系統之建立及其經營管理策略之研究邵廣昭 ; 陳章波 ; 鄭明修 ; 陳昭倫 農委會,92.7.1-92.12.31
1462004Secondary structure and phylogenetic utility of the ribosomal internal transcribed spacer 2 in the scleractinian coralsChen, C. A. ; Chang, C. -C.; Wei, N. V.; Chen, C. -H.; Lein, I-T.; Lin, H. -E; Dai, C. F.; Wallace, C. C.Zoological Studies 43, 759-771
1472003分子遺傳在多毛類種別判定上的應用郭美貞; 謝蕙蓮 ; 陳章波 ; 陳昭倫 生物科學, 46(1), 27-42
148-Smoothen the edges: does the latitudinal gradient in coral communities persist in highly disturbed environments?L. R. Deulofeu; V. Denis; S. De Palmas; H. J. Hsieh; C. A. Chen PLoS One
149-Gene rearrangements in the mitochondrial genomes and molecular phylogeny of Order Corallimorpharia (Anthozoa: Hexacorallia)Gene rearrangements in the mitochondrial genomes and molecular phylogeny of Order Corallimorpharia (Anthozoa: Hexacorallia)Lin, M. -F.; Kitahara, M.; Foret, S.; Chuang, Y. -Y.; Miller, D. J.; Chen, C. A. Genome Biology and Evolution  
150-Molecular genetic analyses indicate different ecomorphs of Isopora palifera (Scleractinia; Acroporidae) are statistically distinguishable lineagesChen, C. A. ; Hsu, C. -M.; Wang, J. -T.; Wallace, C. C.Zoological Studies  
151-The “naked coral” hypothesis revisited: the effects of compositional bias on mitochondrial phylogenies of hexacoralliansKitahara, M.; Lin, M. -F.; Foret, S.; Chuang, Y. -Y.; Miller, D. J.; Chen, C. A. MOLECULAR BIOLOGY AND EVOLUTION  
152-Acclimatization of coral assemblages to seawater warming from a nuclear power plant- winners and losersKeshavmurthy, S.; Meng, P. -J.; Wang, J. -T.; Hsu, C. -M.; Kuo, C. -Y.; Yang, S. -Y.; Tang, G. -S.; Hsu, C. -M.; Gan, C. -H.; Dai, C. -F.; Chen, C. A. GLOBAL CHANGE BIOLOGY