Results 1-69 of 69 (Search time: 0.001 seconds).
| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link | |
|---|---|---|---|---|---|---|---|
| 1 | 2024 | Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication | Pontes, Ana; Paraíso, Francisca; Liu, Yu-Ching; Limtong, Savitree; Jindamorakot, Sasitorn; Jespersen, Lene; Gonçalves, Carla; Rosa, Carlos A.; Tsai, Isheng Jason ; Rokas, Antonis; Hittinger, Chris Todd; Gonçalves, Paula; Sampaio, José Paulo | iScience 27(2), 108987 | |||
| 2 | 2023 | Potential PCR amplification bias in identifying complex ecological patterns: Higher species compositional homogeneity revealed in smaller-size coral reef zooplankton by metatranscriptomics | Mattos, FMG; Dreyer, N; Fong, CL; Wen, YHV; Jain, D; De Vivo, M; Huang, YS; Mwihaki, JK; Wang, TY ; Ho, MJ ; Tsai, IJ ; Wang, J ; Chan, BKK ; Machida, RJ | MOLECULAR ECOLOGY RESOURCES 24(3), e13911 | |||
| 3 | 2023 | Single-worm long-read sequencing reveals genome diversity in free-living nematodes | Lee, Yi-Chien; Ke, Huei-Mien; Liu, Yu-Ching; Lee, Hsin-Han; Wang, Min-Chen; Tseng, Yung-Che ; Kikuchi, Taisei; Tsai, Isheng Jason | Nucleic Acids Research 51(15), 8035-8047 | |||
| 4 | 2023 | Evolution and Diversity of Bioluminescent Fungi | Ke, Huei-Mien; Lu, Min R.; Chang, Chiung-Chih; Hsiao, Chen; Ou, Jie-Hao; Taneyama, Yuichi; Tsai, Isheng Jason | The Mycota (MYCOTA, volume 14) (Switzerland : Springer) | |||
| 5 | 2023 | Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria | Sahu, Neha; Indic, Boris; Wong-Bajracharya, Johanna; Merényi, Zsolt; Ke, Huei-Mien; Ahrendt, Steven; Monk, Tori-Lee; Kocsubé, Sándor; Drula, Elodie; Lipzen, Anna; Bálint, Balázs; Henrissat, Bernard; Andreopoulos, Bill; Martin, Francis M.; Bugge, Harder Christoffer; Rigling, Daniel; Ford, Kathryn L.; Foster, Gary D.; Pangilinan, Jasmyn; Papanicolaou, Alexie; Barry, Kerrie; LaButti, Kurt; Virágh, Máté; Koriabine, Maxim; Yan, Mi; Riley, Robert; Champramary, Simang; Plett, Krista L.; Grigoriev, Igor V.; Tsai, Isheng Jason ; Slot, Jason; Sipos, György; Plett, Jonathan; Nagy, László G. | Nature Microbiology 8, 1668-1681 | |||
| 6 | 2023 | Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing | Yu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang | Nucleic Acids Research 51(15), 7777-7797 | |||
| 7 | 2023 | The mitochondrial genome of Isognomon nucleus and mitogenomics of pteriomorphia (Bivalvia: Autobranchia) | Dreyer, N; de Mattos, FMG; Jain, D; Fong, C-L; De Vivo, M; Wen, YV; Huang, Y-S; Mwihaki, JK; Lee, H-H; Tsai, P-C; Tsao, Y-F; Chan, BKK ; Tsai, IJ ; Machida, RJ ; Wang, T-Y ; Wang, J | Journal of Molluscan Studies 89(1), eyad003 | |||
| 8 | 2023 | The Aphelenchoides genomes reveal substantial horizontal gene transfers in the last common ancestor of free-living and major plant-parasitic nematodes | Lai, CK; Lee, YC; Ke, HM; Lu, MR; Liu, WA; Lee, HH; Liu, YC; Yoshiga, T; Kikuchi, T; Chen, PJ; Tsai, IJ | Molecular ecology resources 23(4), 905-919 | |||
| 9 | 2022 | Translocation of fungicides and their efficacy in controlling Phellinus noxius, the cause of brown root rot disease | Liao, Ting-Zhi; Chen, Yu-Hsuan; Tsai, Jyh-Nong; Chao, Chieh; Huang, Tzu-Pi; Hong, Cheng-Fang; Wu, Zong-Chi; Tsai, Isheng Jason ; Lee, Hsin-Han; Klopfenstein, Ned Brian; Kim, Mee-Sook; Stewart, Jane E.; Atibalentja, Ndeme; Brooks, Fred E.; Cannon, Phil; Mohd, Farid Ahmad; Hattori, Tsutomu; Kwan, Hoi-Shan; Lam, Yau-Ching Regent; Ota, Yuko; Sahashi, Norio; Schlub, Robert L.; Shuey, Louise S.; Tang, Alvin M. C.; Chung, Chia-Lin | Plant Disease 107(7), 2039-2053 | |||
| 10 | 2022 | Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization | Hoh, Daphne Z.; Lee, Hsin-Han; Wada, Naohisa; Liu, Wei-An; Lu, Min R.; Lai, Cheng-Kuo; Ke, Huei-Mien; Sun, Pei-Feng; Tang, Sen-Lin ; Chung, Wen-Hsin; Chen, Ying-Lien; Chung, Chia-Lin; Tsai, Isheng Jason | BMC Biology 20(1), 236 | |||
| 11 | 2022 | Investigation of asymptomatic infection of Phellinus noxius in herbaceous plants | Chen, Chia-Yu; Wu, Zong-Chi; Liu, Tse-Yen; Yu, Shiang-Shiuan; Tsai, Jyh-Nong; Tsai, Yu-Chang; Tsai, Isheng Jason ; Chung, Chia-Lin | Phytopathology 113(3), 460-469 | |||
| 12 | 2022 | The teenage years of yeast population genomics — trace history, admixing and getting wilder | Tsai, Isheng Jason | CURRENT OPINION IN GENETICS & DEVELOPMENT 75, 101942 | |||
| 13 | 2022 | Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum | Mattia De Vivo; Hsin-Han Lee; Yu-Sin Huang; Niklas Dreyer; Chia-Ling Fong; Felipe Monteiro Gomes de Mattos; Dharmesh Jain; Yung-Hui Victoria Wen; John Karichu Mwihaki; Tzi-Yuan Wang ; Ryuji J Machida ; John Wang ; Benny KK Chan ; Isheng Jason Tsai | Scientific Reports 12(1), 9973 | |||
| 14 | 2022 | C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8 | Wu, Yun-Zhe; Jiang, Hang-Shiang; Han, Hsiao-Fen; Li, Po-Hsuan; Lu, Min R.; Tsai, Isheng Jason ; Wu, Yi-Chun | Developmental Biology 486, 96-108 | |||
| 15 | 2022 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J | Genome Research 32(5), 864-877 | |||
| 16 | 2022 | Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks | Ng, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason | Genome Biology and Evolution 14(6), evac083 | |||
| 17 | 2022 | The brown root rot fungus Phellinus noxius affects microbial communities in different root-associated niches of Ficus trees | Liu, Tse‐Yen; Chen, Chao‐Han; Yang, Yu‐Liang ; Tsai, Isheng J. ; Ho, Ying‐Ning; Chung, Chia‐Lin | Environmental microbiology 24(1), 276-297 | |||
| 18 | 2022 | Yeasts from temperate forests | Mozzachiodi, Simone; Bai, Feng‐Yan; Baldrian, Petr; Bell, Graham; Boundy‐Mills, Kyria; Buzzini, Pietro; Čadež, Neža; Cubillos, Francisco A.; Dashko, Sofia; Dimitrov, Roumen; Fisher, Kaitlin J.; Gibson, Brian; Gouliamova, Dilnora; Greig, Duncan; Heistinger, Lina; Hittinger, Chris Todd; Jecmenica, Marina; Koufopanou, Vassiliki; Landry, Christian R.; Mašínová, Tereza; Naumova, Elena S.; Opulente, Dana; Peña, Jacqueline J.; Petrovič, Uroš; Tsai, Isheng Jason ; Turchetti, Benedetta; Villarreal, Pablo; Yurkov, Andrey; Liti, Gianni; Boynton, Primrose | Yeast 39(1-2), 4-24 | |||
| 19 | 2022 | Possible stochastic sex determination in Bursaphelenchus nematodes | Shinya, Ryoji; Sun, Simo; Dayi, Mehmet; Tsai, Isheng Jason ; Miyama, Atsushi; Chen, Anthony Fu; Hasegawa, Koichi; Antoshechkin, Igor; Kikuchi, Taisei; Sternberg, Paul W. | Nature Communications 13, 2574 | |||
| 20 | 2021 | Biogeographic Changes in Forest Soil Microbial Communities of Offshore Islands—A Case Study of Remote Islands in Taiwan | Chang, Ed-Haun; Tsai, Isheng Jason ; Jien, Shih-Hao; Tian, Guanglong; Chiu, Chih-Yu | Forests 12(1), 4 | |||
| 21 | 2021 | Assessing the rectal mucosal microbiota improves mild ulcerative colitis detection sensitivity and evaluation | YF Lin; CM Sung; HM Ke; WA Liu; HY Huang; MJ Lu; IJ Tsai ; SY Hsieh | gut microbes | |||
| 22 | 2021 | Understanding and using fungal bioluminescence – recent progress and future perspectives | HM Ke; IJ Tsai | Current Opinion in Green and Sustainable Chemistry _, 100570 | |||
| 23 | 2020 | Mycena genomes resolve the evolution of fungal bioluminescence | Ke, Huei-Mien; Lee, Hsin-Han; Lin, Chan-Yi Ivy; Liu, Yu-Ching; Lu, Min R.; Hsieh, Jo-Wei Allison; Chang, Chiung-Chih; Wu, Pei-Hsuan; Lu, Meiyeh Jade ; Li, Jeng-Yi; Shang, Gaus; Lu, Rita Jui-Hsien; Nagy, László G.; Chen, Pao-Yang ; Kao, Hsiao-Wei; Tsai, Isheng Jason | Proceedings of the National Academy of Sciences 117(49), 31267-31277 | |||
| 24 | 2020 | Genome plasticity in Paramecium bursaria revealed by population genomics | YH Cheng; CFJ Liu; YH Yu; YT Jhou; M Fujishima; IJ Tsai ; JY Leu | BMC BIOLOGY 18, 180 | |||
| 25 | 2020 | Establishment of three human induced pluripotent stem cell lines from a type 1 diabetic family harboring sequence variants associated with autoimmunity | E.P.F. Chu; C.H. Lin; C.H.H. Cho; I.F. Cheng; T.C. Kuo R.Y. Chen; C.N. Liao; J.C. Cheng; J.I.S. Tsai ; P.C. Wang; S.J. Chang; C.N. Shen | Stem Cell Research 49, 102029 | |||
| 26 | 2020 | Soil is not a reservoir for Phellinus noxius. | Wu, ZC; Chang, YY; Lai, QJ; Lin, HA; Tzean, SS; Liou, RF; Tsai, IJ ; Chung, CL | Phytopathology 110(2), 362-369 | |||
| 27 | 2020 | Nearly Complete Genome Assembly of the Pinewood Nematode Bursaphelenchus xylophilus Strain Ka4C1 | M Dayi; S Sun; Y Maeda; R Tanaka; A Yoshida; IJ Tsai ; T Kikuchi | Microbiology Resource Announcements 9(42), e01002-20 | |||
| 28 | 2020 | Nest microbiota and pathogen abundance in sea turtle hatcheries | Hoh, Daphne Z.; Lin, Yu-Fei; Liu, Wei-An; Sidique, Siti Nordahliawate Mohamed; Tsai, Isheng Jason | Fungal Ecology 47, 100964 | |||
| 29 | 2020 | Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stages | Lu, MR; Lai, CK; Liao, BY; Tsai, IJ | Genome biology and evolution 12(7), 1019-1030 | |||
| 30 | 2019 | Comparative genomics of the major parasitic worms | Avril Coghlan; Rahul Tyagi; James A. Cotton; Nancy Holroyd; Bruce A. Rosa; Isheng Jason Tsai ; Dominik R. Laetsch; Robin N. Beech; Tim A. Day; Kymberlie Hallsworth-Pepin; Huei-Mien Ke; Tzu-Hao Kuo; Tracy J. Lee; John Martin; Rick M. Maizels; Prudence Mutowo; Philip Ozersky; John Parkinson; Adam J. Reid; Neil D. Rawlings; Diogo M. Ribeiro; Lakshmipuram Seshadri Swapna; Eleanor Stanley; David W. Taylor; Nicolas J. Wheeler; Mostafa Zamanian; Xu Zhang; Fiona Allan; Judith E. Allen; Kazuhito Asano; Simon A. Babayan; Germanus Bah; Helen Beasley; Hayley M. Bennett; Stewart A. Bisset; Estela Castillo; Joseph Cook; Philip J. Cooper; Teresa Cruz-Bustos; Carmen Cuéllar; Eileen Devaney; Stephen R. Doyle; Mark L. Eberhard; Aidan Emery; Keeseon S. Eom; John S. Gilleard; Daria Gordon; Yvonne Harcus; Bhavana Harsha; John M. Hawdon; Dolores E. Hill; Jane Hodgkinson; Petr Horák; Kevin L. Howe; Thomas Huckvale; Martin Kalbe; Gaganjot Kaur; Taisei Kikuchi; Georgios Koutsovoulos; Sujai Kumar; Andrew R. Leach; Jane Lomax; Benjamin Makepeace; Jacqueline B. Matthews; Antonio Muro; Noel Michael O’Boyle; Peter D. Olson; Antonio Osuna; Felix Partono; Kenneth Pfarr; Gabriel Rinaldi; Pilar Foronda; David Rollinson; Mercedes Gomez Samblas; Hiroshi Sato; Manuela Schnyder; Tomáš Scholz; Myriam Shafie; Vincent N. Tanya; Rafael Toledo; Alan Tracey; Joseph F. Urban; Lian-Chen Wang; Dante Zarlenga; Mark L. Blaxter; Makedonka Mitreva; Matthew Berriman | Nature Genetics 51(1), 163-174 | |||
| 31 | 2019 | Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus. | Lee, HH; Ke, HM; Lin, CI; Lee, TJ; Chung, CL; Tsai, IJ | Genome biology and evolution 11(10), 2774-2788 | |||
| 32 | 2019 | Sequential changes in the host gut microbiota during infection with the intestinal parasitic nematode Strongyloides venezuelensis | T Afrin; K Murase; A Kounosu; VL Hunt; M Bligh; Y Maeda; A Hino; H Maruyama; IJ Tsai ; T Kikuchi | FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 9, 217 | |||
| 33 | 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | |||
| 34 | 2019 | Structure and diversity of soil bacterial communities in offshore islands | Lin, Y.T.; Lin, Y.F.; Tsai, I.J. ; Chang, E.H.; Jien, S.H.; Lin, Y.J.; Chiu, C.Y. | Scientific Reports 9, 4689 | |||
| 35 | 2019 | Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution | Chaw, SM ; Liu, YC; Wu, YW; Wang, HY; Lin, CI; Wu, CS; Ke, HM; Chang, LY; Hsu, CY; Yang, HT; Sudianto, E; Hsu, MH; Wu, KP; Wang, LN; Leebens-Mack, JH; Tsai, IJ | Nature Plants 5, 63-73 | |||
| 36 | 2019 | Predicting clinical outcomes of cirrhosis patients with hepatic encephalopathy from the fecal microbiome. | Sung, CM; Lin, YF; Chen, KF; Ke, HM; Huang, HY; Gong, YN; Tsai, WS; Lu, MJ ; Cheng, HT; Lin, CY; Kuo, CJ; Tsai, IJ ; Hsieh, SY | Cellular and molecular gastroenterology and hepatology 8(2), 301-318.e2 | |||
| 37 | 2018 | Tracing genomic divergence of Vibrio bacteria in the Harveyi clade. | Ke, HM; Liu, D; Ogura, Y; Hayashi, T; Urbanczyk, H; Tsai, IJ | Journal of bacteriology 18, 1-15 | |||
| 38 | 2018 | Inferring synteny between genome assemblies: a systematic evaluation | Liu, D; Hunt, M; Tsai, IJ | BMC bioinformatics 19(1), 26 | |||
| 39 | 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | |||
| 40 | 2016 | The genomic basis of parasitism in the Strongyloides clade of nematodes. | Hunt, VL; Tsai, IJ ; Coghlan, A; Reid, AJ; Holroyd, N; Foth, BJ; Tracey, A; Cotton, JA; Stanley, EJ; Beasley, H; Bennett, HM; Brooks, K; Harsha, B; Kajitani, R; Kulkarni, A; Harbecke, D; Nagayasu, E; Nichol, S; Ogura, Y; Quail, MA; Randle, N; Xia, D; Brattig, NW; Soblik, H; Ribeiro, DM; Sanchez-Flores, A; Hayashi, T; Itoh, T; Denver, DR; Grant, W; Stoltzfus, JD; Lok, JB; Murayama, H; Wastling, J; Streit, A; Kikuchi, T; Viney, M; Berriman, M | Nature genetics 48(3), 299-307 | |||
| 41 | 2016 | The genome of Onchocerca volvulus, agent of river blindness. | Cotton, JA; Bennuru, S; Grote, A; Harsha, B; Tracey, A; Beech, R; Doyle, SR; Dunn, M; Hotopp, JC; Holroyd, N; Kikuchi, T; Lambert, O; Mhashilkar, A; Mutowo, P; Nursimulu, N; Ribeiro, JM; Rogers, MB; Stanley, E; Swapna, LS; Tsai, IJ ; Unnasch, TR; Voronin, D; Parkinson, J; Nutman, TB; Ghedin, E; Berriman, M; Lustigman, S | Nature Microbiology 2, 16216 | |||
| 42 | 2016 | Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird’s-Nest Fern. | Wu, GL; Kuo, TH; Tsay, TT; Tsai, IJ ; Chen, PJ | PloS one 11(7), e0158663 | |||
| 43 | 2016 | HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni. | Suttiprapa, S; Rinaldi, G; Tsai, IJ ; Mann, VH; Dubrovsky, L; Yan, HB; Holroyd, N; Huckvale, T; Durrant, C; Protasio, AV; Pushkarsky, T; Iordanskiy, S; Berriman, M; Bukrinsky, MI; Brindley, PJ | PLoS pathogens 12(10), e1005931 | |||
| 44 | 2016 | Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster. | Vicente, CS; Nascimento, FX; Barbosa, P; Ke, HM; Tsai, IJ ; Hirao, T; Cock, PJ; Kikuchi, T; Hasegawa, K; Mota, M | Microbial ecology 72(3), 669-681 | |||
| 45 | 2016 | The genome of Strongyloides spp. gives insights into protein families with a putative role in nematode parasitism. | Hunt, VL; Tsai, IJ ; Selkirk, ME; Viney, M | Parasitology , 1-16 | |||
| 46 | 2015 | Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits. | Palomares-Rius, JE; Tsai, IJ ; Karim, N; Akiba, M; Kato, T; Maruyama, H; Takeuchi, Y; Kikuchi, T | BMC genomics 16(1), 845 | |||
| 47 | 2015 | Genetic Differentiation and Spatial Structure of Phellinus noxius, the Causal Agent of Brown Root Rot of Woody Plants in Japan. | Akiba, M; Ota, Y; Tsai, IJ ; Hattori, T; Sahashi, N; Kikuchi, T | PloS one 10(10), e0141792 | |||
| 48 | 2015 | Estimating the Fitness Effects of New Mutations in the Wild Yeast Saccharomyces paradoxus. | Koufopanou, V; Lomas, S; Tsai, IJ ; Burt, A | Genome biology and evolution 7(7), 1887-95 | |||
| 49 | 2015 | Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant parasitic nematode Bursaphelenchus xylophilus. | Tsai, IJ ; Tanaka, R; Kanzaki, N; Akiba, M; Yokoi, T; Espada, M; Jones, JT; Kikuchi, T | Molecular plant pathology | |||
| 50 | 2014 | Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA. | Tsai, IJ ; Hunt, M; Holroyd, N; Huckvale, T; Berriman, M; Kikuchi, T | DNA research : an international journal for rapid publication of reports on genes and genomes 21(3), 243-54 | |||
| 51 | 2014 | Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. | Tsai, IJ ; Tanaka, E; Masuya, H; Tanaka, R; Hirooka, Y; Endoh, R; Sahashi, N; Kikuchi, T | Genome biology and evolution 6(4), 861-72 | |||
| 52 | 2014 | Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. | Foth, BJ; Tsai, IJ ; Reid, AJ; Bancroft, AJ; Nichol, S; Tracey, A; Holroyd, N; Cotton, JA; Stanley, EJ; Zarowiecki, M; Liu, JZ; Huckvale, T; Cooper, PJ; Grencis, RK; Berriman, M | Nature genetics 46(7), 693-700 | |||
| 53 | 2014 | Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. | Palomares-Rius, JE; Hirooka, Y; Tsai, IJ ; Masuya, H; Hino, A; Kanzaki, N; Jones, JT; Kikuchi, T | BMC evolutionary biology 14, 69 | |||
| 54 | 2014 | Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. | Tanaka, R; Hino, A; Tsai, IJ ; Palomares-Rius, JE; Yoshida, A; Ogura, Y; Hayashi, T; Maruyama, H; Kikuchi, T | PloS one 9(10), e110769 | |||
| 55 | 2014 | The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. | Cotton, JA; Lilley, CJ; Jones, LM; Kikuchi, T; Reid, AJ; Thorpe, P; Tsai, IJ ; Beasley, H; Blok, V; Cock, PJ; Eves-van den Akker, S; Holroyd, N; Hunt, M; Mantelin, S; Naghra, H; Pain, A; Palomares-Rius, JE; Zarowiecki, M; Berriman, M; Jones, JT; Urwin, PE | Genome biology 15(3), R43 | |||
| 56 | 2014 | The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. | Bennett, HM; Mok, HP; Gkrania-Klotsas, E; Tsai, IJ ; Stanley, EJ; Antoun, NM; Coghlan, A; Harsha, B; Traini, A; Ribeiro, DM; Steinbiss, S; Lucas, SB; Allinson, KS; Price, SJ; Santarius, TS; Carmichael, AJ; Chiodini, PL; Holroyd, N; Dean, AF; Berriman, M | Genome biology 15(11), 510 | |||
| 57 | 2013 | The genomes of four tapeworm species reveal adaptations to parasitism. | Tsai, IJ ; Zarowiecki, M; Holroyd, N; Garciarrubio, A; Sanchez-Flores, A; Brooks, KL; Tracey, A; Bobes, RJ; Fragoso, G; Sciutto, E; Aslett, M; Beasley, H; Bennett, HM; Cai, J; Camicia, F; Clark, R; Cucher, M; De Silva, N; Day, TA; Deplazes, P; Estrada, K; Fernandez, C; Holland, PW; Hou, J; Hu, S; Huckvale, T; Hung, SS; Kamenetzky, L; Keane, JA; Kiss, F; Koziol, U; Lambert, O; Liu, K; Luo, X; Luo, Y; Macchiaroli, N; Nichol, S; Paps, J; Parkinson, J; Pouchkina-Stantcheva, N; Riddiford, N; Rosenzvit, M; Salinas, G; Wasmuth, JD; Zamanian, M; Zheng, Y; Cai, X; Soberon, X; Olson, PD; Laclette, JP; Brehm, K; Berriman, M | Nature 496(7443), 57-63 | |||
| 58 | 2013 | Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites. | Valentim, CL; Cioli, D; Chevalier, FD; Cao, X; Taylor, AB; Holloway, SP; Pica-Mattoccia, L; Guidi, A; Basso, A; Tsai, IJ ; Berriman, M; Carvalho-Queiroz, C; Almeida, M; Aguilar, H; Frantz, DE; Hart, PJ; LoVerde, PT; Anderson, TJ | Science (New York, N.Y.) 342(6164), 1385-9 | |||
| 59 | 2013 | The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. | Laing, R; Kikuchi, T; Martinelli, A; Tsai, IJ ; Beech, RN; Redman, E; Holroyd, N; Bartley, DJ; Beasley, H; Britton, C; Curran, D; Devaney, E; Gilabert, A; Hunt, M; Jackson, F; Johnston, SL; Kryukov, I; Li, K; Morrison, AA; Reid, AJ; Sargison, N; Saunders, GI; Wasmuth, JD; Wolstenholme, A; Berriman, M; Gilleard, JS; Cotton, JA | Genome biology 14(8), R88 | |||
| 60 | 2012 | Germline transgenesis and insertional mutagenesis in Schistosoma mansoni mediated by murine leukemia virus. | Rinaldi, G; Eckert, SE; Tsai, IJ ; Suttiprapa, S; Kines, KJ; Tort, JF; Mann, VH; Turner, DJ; Berriman, M; Brindley, PJ | PLoS pathogens 8(7), e1002820 | |||
| 61 | 2012 | The first green revolution. | Tsai, IJ | Nature reviews. Microbiology 10(5), 314 | |||
| 62 | 2012 | Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states. | Cho, LT; Wamaitha, SE; Tsai, IJ ; Artus, J; Sherwood, RI; Pedersen, RA; Hadjantonakis, AK; Niakan, KK | Development (Cambridge, England) 139(16), 2866-77 | |||
| 63 | 2012 | A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. | Protasio, AV; Tsai, IJ ; Babbage, A; Nichol, S; Hunt, M; Aslett, MA; De Silva, N; Velarde, GS; Anderson, TJ; Clark, RC; Davidson, C; Dillon, GP; Holroyd, NE; LoVerde, PT; Lloyd, C; McQuillan, J; Oliveira, G; Otto, TD; Parker-Manuel, SJ; Quail, MA; Wilson, RA; Zerlotini, A; Dunne, DW; Berriman, M | PLoS neglected tropical diseases 6(1), e1455 | |||
| 64 | 2011 | Genome watch: Honey, I shrunk the mimiviral genome. | Tsai, IJ | Nature reviews. Microbiology 9(8), 563 | |||
| 65 | 2011 | Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. | Kikuchi, T; Cotton, JA; Dalzell, JJ; Hasegawa, K; Kanzaki, N; McVeigh, P; Takanashi, T; Tsai, IJ ; Assefa, SA; Cock, PJ; Otto, TD; Hunt, M; Reid, AJ; Sanchez-Flores, A; Tsuchihara, K; Yokoi, T; Larsson, MC; Miwa, J; Maule, AG; Sahashi, N; Jones, JT; Berriman, M | PLoS pathogens 7(9), e1002219 | |||
| 66 | 2010 | Conservation of recombination hotspots in yeast. | Tsai, IJ ; Burt, A; Koufopanou, V | Proceedings of the National Academy of Sciences of the United States of America 107(17), 7847-52 | |||
| 67 | 2010 | Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. | Tsai, IJ ; Otto, TD; Berriman, M | Genome biology 11(4), R41 | |||
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