| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 1 | 2019 | The transformation impact on methylome and transcriptome of transgenic rice | Gohain, M; Chang, P; Lu, JH; Hsu, FM; Kuang, LY; Hsing, YI; Chen, PY | | | | |
| 2 | 2019 | The change of genome-wide DNA methylation during rice transformation | Chen, PY | | | | |
| 3 | 2023 | Rice Transformation Leaves Footprints on the Genome-Wide DNA Methylation Landscape | Chen, PY | | | | |
| 4 | 2019 | Investigation of Genome-wide DNA Methylation in Plants, Animals and Fungi | Chen, PY | | | | |
| 5 | 2018 | Exploring the transcriptome-methylome dynamics in Termitomyces mushroom | Hsu, FM; Hsieh, HM; Lu, JH; Hsieh, CJ; Huang, YJ; Yen, MR; Lin, CY; Ju, YM; Chen, PY | | | | |
| 6 | 2019 | Exploring the transcriptome-methylome dynamics in Termitomyces eurhizus | Huang, YC; Hsieh, HM; Lin, CY; Ju, YM; Chen, PY | | | | |
| 7 | 2023 | Estimating Genome-Wide DNA Methylation Heterogeneity in Rice | Lin, PY; Chang, YT; Lee, J; Huang, YCand, Chen, PY | | | | |
| 8 | 2023 | Epigenomic Footprints in the Regeneration and Transformation of Rice | Hsieh, JW A; Chang, P; Kuang, LY; Hsing, YI, C; Chen, PY | | | | |
| 9 | 2022 | Epigenome bioinformatics in rice and plants | Chen, PY | | | | |
| 10 | 2022 | Epigenome Bioinformatics in Plants | Chen, PY | | | | |
| 11 | 2021 | Dissecting the Dynamic Changes of Methylome During Rice Transformation | Chen, PY | | | | |
| 12 | 2023 | Detecting the Interplay Between DNA Methylation and Lipid Production in Plants | Hsieh, JW; Liu, YC; Huang, LT; Nakamura, Y; Chen, PY | | | | |
