| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 1 | 2016 | A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule | Ku, Chuan ; Martin, William F. | BMC Biology 14, 89 | | | |
| 2 | 2013 | Comparison of Metabolic Capacities and Inference of Gene Content Evolution in Mosquito-Associated Spiroplasma diminutum and S. taiwanense | Lo, Wen-Sui; Ku, Chuan ; Chen, Ling-Ling; Chang, Tean-Hsu; Kuo, Chih-Horng | Genome Biology and Evolution 5(8), 1512-1523 | | | |
| 3 | 2023 | Complete Genome Sequence of Phaeobacter sp. Strain G2, Isolated from a Lab Culture of the Calcifying Alga Emiliania huxleyi | Siwat Chang; Ming-Wei Lai; Tzu-Haw Wang; Chuan Ku | Microbiology Resource Announcements 12(1), e01067-22 | | | |
| 4 | 2014 | Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera) | Ku, C. ; Lo, W.-S.; Chen, L.-L.; Kuo, C.-H. | Genome Announcements 2(1), e01151-13 | | | |
| 5 | 2013 | Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma | Ku, Chuan ; Lo, Wen-Sui; Chen, Ling-Ling; Kuo, Chih-Horng | Genome Biology and Evolution 5(6), 1151-1164 | | | |
| 6 | 2022 | Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics | Gur Hevroni; Flora J. Vincent; Chuan Ku ; Uri Sheyn; Assaf Vardi | bioRxiv | | | |
| 7 | 2020 | Did giant and large dsDNA viruses originate before their eukaryotic hosts? | Ku, Chuan ; Sun, Tsu-Wang | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(6), 2747-2748 | | | |
| 8 | 2021 | Giant virus-eukaryote interactions as ecological and evolutionary driving forces | Chuan Ku | MSYSTEMS 6(4), e00737-21 | | | |
| 9 | 2013 | Horizontal transfer of potential mobile units in phytoplasmas | Ku, Chuan ; Lo, Wen-Sui; Kuo, Chih-Horng | Mobile Genetic Elements 3(5), e26145 | | | |
| 10 | 2020 | Host Range and Coding Potential of Eukaryotic Giant Viruses | Tsu-Wang Sun; Chia-Ling Yang; Tzu-Tong Kao; Tzu-Haw Wang; Ming-Wei Lai; Chuan Ku | VIRUSES-BASEL 12(11), 1337 | | | |
| 11 | 2024 | Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus | Chen, Y.-L.; Hsieh, J.-W. A.; Kuo, S.-C.; Kao, C.-T.; Tung, C.-C.; Yu, J.-H.; Chang, T.-H. ; Ku, C. ; Xie, J.; Zhang, D.; Li, Q.; Lin, Y.-C. J. | Genome Biology 25, 85 | | | |
| 12 | 2014 | Molecular evolution of the actin-like MreB protein gene family in wall-less bacteria | Ku, Chuan ; Lo, Wen-Sui; Kuo, Chih-Horng | Biochemical and Biophysical Research Communications 446(4), 927-932 | | | |
| 13 | 2014 | Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species | Chang, Tean-Hsu; Lo, Wen-Sui; Ku, Chuan ; Chen, Ling-Ling; Kuo, Chih-Horng | Genome Biology and Evolution 6(3), 500-509 | | | |
| 14 | 2022 | Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae | Tzu-Tong Kao; Tzu-Haw Wang; Chuan Ku | NEW PHYTOLOGIST Early View | | | |
| 15 | 2023 | Single-cell transcriptomics unveils xylem cell development and evolution | Chia-Chun Tung; Shang-Che Kuo; Chia-Ling Yang; Jhong-He Yu; Chia-En Huang; Pin-Chien Liou; Ying-Hsuan Sun; Peng Shuai; Jung-Chen Su; Chuan Ku ; Ying-Chung Jimmy Lin | GENOME BIOLOGY 24, 3 | | | |
| 16 | 2013 | The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids | Ku, Chuan ; Chung, Wan-Chia; Chen, Ling-Ling; Kuo, Chih-Horng | PLoS ONE 8(6), e68518 | | | |
| 17 | 2021 | Unraveling Gene Content Variation Across Eukaryotic Giant Viruses Based on Network Analyses and Host Associations | Tsu-Wang Sun; Chuan Ku | Virus Evolution 7(2), veab081 | | | |
| 18 | 2019 | Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes | Ku, Chuan ; Sebé-Pedrós, Arnau | Philosophical Transactions of the Royal Society B-Biological Sciences 374(1786), 20190098 | | | |
| 19 | 2023 | Widespread distribution and evolution of poxviral entry-fusion complex proteins in giant viruses | Sheng Kao; Chi-Fei Kao; Wen Chang ; Chuan Ku | MICROBIOLOGY SPECTRUM 11(2), XX | | | |
