An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Yuxiang Jiang; Tal Ronnen Oron; Wyatt T. Clark; Asma R. Bankapur; Daniel D’Andrea; Rosalba Lepore; Christopher S. Funk; Indika Kahanda; Karin M. Verspoor; Asa Ben-Hur; Da Chen Emily Koo; Duncan Penfold-Brown; Dennis Shasha; Noah Youngs; Richard Bonneau; Alexandra Lin; Sayed M. E. Sahraeian; Pier Luigi Martelli; Giuseppe Profiti; Rita Casadio; Renzhi Cao; Zhaolong Zhong; Jianlin Cheng; Adrian Altenhoff; Nives Skunca; Christophe Dessimoz; Tunca Dogan; Kai Hakala; Suwisa Kaewphan; Farrokh Mehryary; Tapio Salakoski; Filip Ginter; Hai Fang; Ben Smithers; Matt Oates; Julian Gough; Petri Törönen; Patrik Koskinen; Liisa Holm; Ching-Tai Chen; Wen-Lian Hsu; Kevin Bryson; Domenico Cozzetto; Federico Minneci; David T. Jones; Samuel Chapman; Dukka BKC; Ishita K. Khan; Daisuke Kihara; Dan Ofer; Nadav Rappoport; Amos Stern; Elena Cibrian-Uhalte; Paul Denny; Rebecca E. Foulger; Reija Hieta; Duncan Legge; Ruth C. Lovering; Michele Magrane; Anna N. Melidoni; Prudence Mutowo-Meullenet; Klemens Pichler; Aleksandra Shypitsyna; Biao Li; Pooya Zakeri; Sarah ElShal; Léon-Charles Tranchevent; Sayoni Das; Natalie L. Dawson; David Lee; Jonathan G. Lees; Ian Sillitoe; Prajwal Bhat; Tamás Nepusz; Alfonso E. Romero; Rajkumar Sasidharan; Haixuan Yang; Alberto Paccanaro; Jesse Gillis; Adriana E. Sedeño-Cortés; Paul Pavlidis; Shou Feng; Juan M. Cejuela; Tatyana Goldberg; Tobias Hamp; Lothar Richter; Asaf Salamov; Toni Gabaldon; Marina Marcet-Houben; Fran Supek; Qingtian Gong; Wei Ning; Yuanpeng Zhou; Weidong Tian; Marco Falda; Paolo Fontana; Enrico Lavezzo; Stefano Toppo; Carlo Ferrari; Manuel Giollo; Damiano Piovesan; Silvio C.E. Tosatto; Angela del Pozo; José M. Fernández; Paolo Maietta; Alfonso Valencia; Michael L. Tress; Alfredo Benso; Stefano Di Carlo; Gianfranco Politano; Alessandro Savino; Hafeez Ur Rehman; Matteo Re; Marco Mesiti; Giorgio Valentini; Joachim W. Bargsten; Aalt D. J. van Dijk; Branislava Gemovic; Sanja Glisic; Vladmir Perovic; Veljko Veljkovic; Nevena Veljkovic; Danillo C. Almeida-e-Silva; Ricardo Z. N. Vencio; Malvika Sharan; Jörg Vogel; Lakesh Kansakar; Shanshan Zhang; Slobodan Vucetic; Zheng Wang; Michael J. E. Sternberg; Mark N. Wass; Rachael P. Huntley; Maria J. Martin; Claire O’Donovan; Peter N. Robinson; Yves Moreau; Anna Tramontano; Patricia C. Babbitt; Steven E. Brenner; Michal Linial; Christine A. Orengo; Burkhard Rost; Casey S. Greene; Sean D. Mooney; Iddo Friedbergd; Predrag Radivojac

Title:	An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Authors:	Yuxiang Jiang Tal Ronnen Oron Wyatt T. Clark Asma R. Bankapur Daniel D’Andrea Rosalba Lepore Christopher S. Funk Indika Kahanda Karin M. Verspoor Asa Ben-Hur Da Chen Emily Koo Duncan Penfold-Brown Dennis Shasha Noah Youngs Richard Bonneau Alexandra Lin Sayed M. E. Sahraeian Pier Luigi Martelli Giuseppe Profiti Rita Casadio Renzhi Cao Zhaolong Zhong Jianlin Cheng Adrian Altenhoff Nives Skunca Christophe Dessimoz Tunca Dogan Kai Hakala Suwisa Kaewphan Farrokh Mehryary Tapio Salakoski Filip Ginter Hai Fang Ben Smithers Matt Oates Julian Gough Petri Törönen Patrik Koskinen Liisa Holm Ching-Tai Chen Wen-Lian Hsu Kevin Bryson Domenico Cozzetto Federico Minneci David T. Jones Samuel Chapman Dukka BKC Ishita K. Khan Daisuke Kihara Dan Ofer Nadav Rappoport Amos Stern Elena Cibrian-Uhalte Paul Denny Rebecca E. Foulger Reija Hieta Duncan Legge Ruth C. Lovering Michele Magrane Anna N. Melidoni Prudence Mutowo-Meullenet Klemens Pichler Aleksandra Shypitsyna Biao Li Pooya Zakeri Sarah ElShal Léon-Charles Tranchevent Sayoni Das Natalie L. Dawson David Lee Jonathan G. Lees Ian Sillitoe Prajwal Bhat Tamás Nepusz Alfonso E. Romero Rajkumar Sasidharan Haixuan Yang Alberto Paccanaro Jesse Gillis Adriana E. Sedeño-Cortés Paul Pavlidis Shou Feng Juan M. Cejuela Tatyana Goldberg Tobias Hamp Lothar Richter Asaf Salamov Toni Gabaldon Marina Marcet-Houben Fran Supek Qingtian Gong Wei Ning Yuanpeng Zhou Weidong Tian Marco Falda Paolo Fontana Enrico Lavezzo Stefano Toppo Carlo Ferrari Manuel Giollo Damiano Piovesan Silvio C.E. Tosatto Angela del Pozo José M. Fernández Paolo Maietta Alfonso Valencia Michael L. Tress Alfredo Benso Stefano Di Carlo Gianfranco Politano Alessandro Savino Hafeez Ur Rehman Matteo Re Marco Mesiti Giorgio Valentini Joachim W. Bargsten Aalt D. J. van Dijk Branislava Gemovic Sanja Glisic Vladmir Perovic Veljko Veljkovic Nevena Veljkovic Danillo C. Almeida-e-Silva Ricardo Z. N. Vencio Malvika Sharan Jörg Vogel Lakesh Kansakar Shanshan Zhang Slobodan Vucetic Zheng Wang Michael J. E. Sternberg Mark N. Wass Rachael P. Huntley Maria J. Martin Claire O’Donovan Peter N. Robinson Yves Moreau Anna Tramontano Patricia C. Babbitt Steven E. Brenner Michal Linial Christine A. Orengo Burkhard Rost Casey S. Greene Sean D. Mooney Iddo Friedbergd Predrag Radivojac
Issue Date:	2016-09
Relation:	Genome Biology 2016 17:184
URI:	http://ir.sinica.edu.tw/handle/201000000A/40644
ISSN:	http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Drexel&SrcApp=hagerty_opac&KeyRecord=1474-760X&DestApp=JCR&RQ=IF_CAT_BOXPLOT
Appears in Collections:	資訊科學研究所

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