OrgUnit's Researchers Outputs

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Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12024Exploring gingerol glucosides with enhanced anti-inflammatory activity through a newly identified α-glucosidase (ArG) from Agrobacterium radiobacter DSM 30147Chang, TS; Wu, JY; Ding, HY; Lin, HY; Wang, TY Journal of Bioscience and Bioengineering 138(3), 218-224
22024The genomic evolution of visual opsin genes in amphibiansLin, JJ; Wang, FY; Chung, WY; Wang, TY Vision Research 222, 108447
32024A two-year physicochemical and acoustic observation reveals spatiotemporal effects of earthquake-induced shallow-water hydrothermal venting on the surrounding environmentsChiu, L.; Wang, M.-C.; Wei, C.-L.; Lin, T.-H. ; Tseng, Y.-C. LIMNOLOGY AND OCEANOGRAPHY LETTERS 9(4), 423-432
42024Diversity in Cyanidiophyceae: Cyanidiofrigus pintoensis gen. et sp. nov. within polyextremophilic red algae (Rhodophyta)Huang, TY; Yoon, HS; Chiang, YR ; Fu, HY; Watanabe, T; Gerung, GS; Geraldino, PJL; Liu, SLPHYCOLOGIA 63(2), 245-259
52024Decoding the genome of bloodsucking midge Forcipomyia taiwana (diptera: Ceratopogonidae): Insights into odorant receptor expansionMing-Der Lin; Chia-Hsien Chuang; Chih-Hsin Kao; Shu-Hwa Chen; Szu-Chieh Wang; Ping-Heng Hsieh; Guan-Yu Chen; Chun-Chia Mao; Jeng-Yi Li; Mei-Yeh Jade Lu ; Chung-Yen Lin Insect Biochemistry and Molecular Biology 168, 104115
62024Environmental DNA-based biodiversity profiling along the Houdong River in north-eastern TaiwanLin, Chieh-Ping; Huang, Chung-Hsin; Padgett, Trevor; Bucay, Mark Angelo; Chen, Cheng-Wei; Shen, Zong-Yu; Chiu, Ling; Tseng, Yung-Che ; Yu, Jr-Kai ; Wang, John ; Wang, Min-Chen; Hoh, DaphneBiodiversity Data Journal 12, e116921
72024A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot traitChan, Y.-F.; Lu, C.-W.; Kuo, H.-C.; Hung, C.-M. G3 Genes|Genomes|Genetics 14(6), kae077
82024Amino acid self-regenerating cell-free protein synthesis system that feeds on PLA plastics, CO2, ammonium, and α-ketoglutarateShota, N; Yu, WC; Jia, T; He, MJ; Khusnutdinova, A; Yakunin, A; Chiang, YR ; Fujishima, K; Wang, PHACS CATALYSIS 14(10), 7696-7706
92024Advancing auditory processing by detecting frequency-following responses through a specialized machine learning modelJeng, F.-C.; Matzdorf, K. Hickman; K.; Bauer, S.; Carriero, A.; McDonald, K.; Lin, T.-H. ; Wang, C.-Y.PERCEPTUAL AND MOTOR SKILLS 131(2), 417-431
102024Dual Regulation of Cytochrome P450 Gene Expression by Two Distinct Small RNAs, a Novel tasiRNA and miRNA, in Marchantia polymorphaHung, Yu-Ling; Hong, Syuan-Fei; Wei, Wei-Lun; Cheng, Shiuan; Yu, Jia-Zhen; Tjita, Veny; Yong, Qian-Yuan; Nishihama, Ryuichi; Kohchi, Takayuki; Bowman, John L; Chien, Yuan-Chi; Chiu, Yen-Hsin; Yang, Ho-Chun; Lu, Mei-Yeh Jade ; Pan, Zhao-Jun; Wang, Chun-Neng; Lin, Shih-ShunPlant And Cell Physiology 65(7), 1115-1134
112024A new cryptic species of splitfin fish from Taiwan with revision of the genus Synagrops (Acropomatiformes: Synagropidae)Dominique Mediodia; Chia-Hao Chang; Hsuan-Ching Ho; Tomas Přikryl; Chien-Hsiang Lin ZOOLOGICAL STUDIES 63, 20
122024Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domesticationPontes, Ana; Paraíso, Francisca; Liu, Yu-Ching; Limtong, Savitree; Jindamorakot, Sasitorn; Jespersen, Lene; Gonçalves, Carla; Rosa, Carlos A.; Tsai, Isheng Jason ; Rokas, Antonis; Hittinger, Chris Todd; Gonçalves, Paula; Sampaio, José PauloiScience 27(2), 108987
132024Genomic data revealed inbreeding despite a geographically connected stable effective population size since the Holocene in the protected Formosan Long-Arm Scarab beetle, Cheirotonus formosanusHuang, Jen-Pan ; Wu, Shu-Ping; Chen, Wei-Yun; Pham, Guanjie; Kuan, Yi-HsiuJournal of Heredity 115(3), 292-301
142024Mapping geological events and nitrogen fixation evolution onto the timetree of the evolution of nitrogen-fixation genesPi, HW; YR Chiang ; WH Li MOLECULAR BIOLOGY AND EVOLUTION 41(2), msae023
152024Acoustic twilight: A year-long seafloor monitoring unveils phenological patterns in the abyssal soundscapeLin, T.-H. ; Kawagucci, S.LIMNOLOGY AND OCEANOGRAPHY LETTERS 9(1), 23-32
162024Paleoichthyology in the Philippines: A review of Cenozoic fish fossils with insights on its current status and future opportunitiesDominique Mediodia; Abigael Castro; Meyrick Tablizo; David Policarpio; Joeven Calvelo; John Phillip Baguio; Antero Borja II; Chien-Hsiang Lin ; Allan Gil FernandoGEOBIOS
172024Early Eocene fish otoliths from the eastern and southern USAChien-Hsiang Lin ; Etienne Steurbaut; Dirk NolfEUROPEAN JOURNAL OF TAXONOMY 935(1), 203-240
182024The genomes of Hercules beetles reveal putative adaptive loci and distinct demographic histories in pristine North American forestsLe, My‐Hanh; Morgan, Brett; Lu, Mei‐Yeh ; Moctezuma, Victor; Burgos, Oscar; Huang, Jen‐Pan Molecular Ecology Resources 24(2), e13908
192024A gauge of coral physiology: re-examining temporal changes in <i>Endozoicomonas</i> abundance correlated with natural coral bleachingChuang, Po-Shun; Yu, Sheng-Ping; Liu, Po-Yu; Hsu, Ming-Tsung; Chiou, Yu-Jing; Lu, Chih-Ying; Tang, Sen-Lin ISME Communications 4(1), ycae001
202024Phylogeography of the intertidal barnacle Chthamalus barnesi in the northwestern Indian OceanShahdadi, A.; Z. Azan; B.K.K. Chan Marine Ecology Progress Series 726, 99-112
212024Highly efficient capture approach for the identification of diverse inherited retinal disordersKao, Hsiao-Jung; Lin, Ting-Yi; Hsieh, Feng-Jen; Chien, Jia-Ying; Yeh, Erh-Chan; Lin, Wan-Jia; Chen, Yi-Hua; Ding, Kai-Hsuan; Yang, Yu; Chi, Sheng-Chu; Tsai, Ping-Hsing; Hsu, Chih-Chien; Hwang, De-Kuang; Tsai, Hsien-Yang; Peng, Mei-Ling; Lee, Shi-Huang; Chau, Siu-Fung; Chen, Chen Yu; Cheang, Wai-Man; Chen, Shih-Jen; Kwok, Pui-Yan; Chiou, Shih-Hwa; Lu, Mei-Yeh Jade ; Huang, Shun-Pingnpj Genomic Medicine 9(1), 4
222024Shark Skin Denticles: From Morphological Diversity to Multi-functional Adaptations and ApplicationsGhimire, Ashish; Dahl, Rikke Beckmann; Shen, Sheng‐Feng ; Chen, Po‐YuAdvanced Functional Materials 34(35), 2307121
232024Late Miocene teleost fish otoliths from Brunei Darussalam (Borneo) and their implications for palaeoecology and palaeoenvironmental conditionsLászló Kocsis; Chien-Hsiang Lin ; Emma Bernard; Adibah JohariHISTORICAL BIOLOGY
242024Fine-scale spatial variability of marine acoustic environment corresponds with habitat utilization of Indo-Pacific humpback dolphins in Hong Kong watersHo, Y.-W.; Lin, T.-H. ; Akamatsu, T.; Karczmarski, L.ECOLOGICAL INDICATORS 158, 111228
252024Systematics and evolutionary dynamics of insect-fern interactions in the specialized fern-spore feeding Cuprininae (Lepidoptera, Stathmopodidae)Shen, Zong-Yu; Terada, Takeshi; Landry, Jean-François; Hoare, Robert J.B.; Kuo, Li-Yaung; Chou, Ming-Hsun; Hsu, Yu-Feng; Huang, Jen-Pan Molecular Phylogenetics and Evolution 194, 108040
262024Can immature stages be ignored in studies of forest leaf litter arthropod diversity? A test using Oxford Nanopore DNA barcodingFikáček, Martin; Hu, Fang‐Shuo; Le, My‐Hanh; Huang, Jen-Pan Insect Conservation and Diversity 17(1), 31-50
272023Microalgal polyphosphate drives one-pot complete enzymatic generation of flavin adenine dinucleotide from adenosine and riboflavinYi-Jung Sung; Takumi Takahashi; Yi-Hsuan Lin; Tony Z Jia; Yin-Ru Chiang ; Po-Hsiang WangACS SUSTAINABLE CHEMISTRY & ENGINEERING 12(2), 680-686
282023Rediscovery of Seriatopora corals in shallow reefs of Okinawa Island, JapanYamashiro, Hideyuki; Tang, Sen-Lin Regional Studies in Marine Science 70, 103352
292023A global database of bird nest traitsChia, S.-Y.; Fang, Y.-T.; Su, Y.-T.; Tsai, P.-Y.; Hsieh, C.; Tsao, S.-H.; Juang, J.-Y.; Hung, C.-M. ; Tuanmu, M.-N. Scientific Data 10(1), 923
302023New Pleistocene bird fossils in Taiwan reveal unexpected seabirds in East AsiaSiao-Man Wu; Trevor Worthy; Chih-Kai Chuang; Chien-Hsiang Lin ACTA PALAEONTOLOGICA POLONICA 68(4), 613-624
312023Potential PCR amplification bias in identifying complex ecological patterns: Higher species compositional homogeneity revealed in smaller-size coral reef zooplankton by metatranscriptomicsMattos, FMG; Dreyer, N; Fong, CL; Wen, YHV; Jain, D; De Vivo, M; Huang, YS; Mwihaki, JK; Wang, TY ; Ho, MJ ; Tsai, IJ ; Wang, J ; Chan, BKK ; Machida, RJ MOLECULAR ECOLOGY RESOURCES 24(3), e13911
322023C4 leaf development and evolutionHuang, CF; Liu, WY; Yu, CP; Wu, SH ; Ku, MSB; Li, WH CURRENT OPINION IN PLANT BIOLOGY 76, 102454
332023Record of the Amarsipa fish (Family Amarsipidae) from Pratas Island, South China SeaHsuan-Ching Ho; Yo Su; Chien-Hsiang Lin ; Tah-Wei ChuZOOTAXA 5380(3), 289-294
342023Insights on the connectivity, genetic diversity, and population structure of Arctodiaptomus dorsalis (Marsh, 1907) (Copepoda: Calanoida: Diaptomidae) in the PhilippinesGuinto, SKP; Machida, RJ ; Papa, RDSJOURNAL OF CRUSTACEAN BIOLOGY 43(4), ruad070
352023Similar but different: Characterization of dddD gene–mediated DMSP metabolism among coral-associated EndozoicomonasYu-Jing Chiou; Ya-Fan Chan; Sheng-Ping Yu; Chih-Ying Lu; Silver Sung-Yun Hsiao; Pei-Wen Chiang; Ting-Chang Hsu; Po-Yu Liu; Naohisa Wada; Yu Lee; Wann-Neng Jane ; Der-Chuen Lee ; Yu-Wen Huang; Sen-Lin Tang SCIENCE ADVANCES 9(47), eadk191
362023Mechanistic understanding of how temperature and its variability shape body size composition in moth assemblagesChia, S; Wu, S; Lu, Y-J; Jang, Y-S; Huang, C-C; Shen, S-F ; Chen, I-C; Tuanmu, M-N Functional Ecology 38(1), 206-218
372023Comparative genomics reveals the dynamic evolutionary history of cement protein genes of barnacles from intertidal to deep-sea hydrothermal ventsLee, W.‐K.; B. K. K. Chan ; J.‐Y. Kim; S.‐J. Ju; S.‐J. KimMolecular Ecology Resources 24(2), e13895
382023A Global Library of Underwater Biological Sounds (GLUBS): An online platform with multiple passive acoustic monitoring applicationsParsons, M. J. G.; Looby, A.; Chanda, K.; Di Iorio, L.; Erbe, C.; Frazao, F.; Havlik, M.; Juanes, F.; Lammers, M.; Li, S.; Liffers, M.; Lin, T.-H. ; Linke, S.; Mooney, T. A.; Radford, C.; Rice, A. N.; Rountree, R.; Sayigh, L.; Sousa-Lima, R.; Stanley, J.; Thomisch, K.; Urban, E.; Zeeland, L.; Vela, S.; Zuffi, S.; Nedelec, S. L.The Effects of Noise on Aquatic Life (Cham : Springer)
392023Group size and the resolution of insider–outsider conflict in animal societiesShen, Sheng-Feng ; Reeve, H. Kern; Emlen, Stephen T.; Liu, Ming; Rubenstein, DustinAnimal Behaviour 205, 107-116
402023New records of three mesopelagic fish species from Southwestern TaiwanShing-Lai Ng; Chien-Hsiang Lin ; Kwang-Ming Liu; Shoou-Jeng JoungTHALASSAS 40, 81-90
412023Harnessing microbial phylum-specific molecular markers for assessment of environmental estrogen degradationTsun-Hsien Hsiao; Po-Hao Chen; Po-Hsiang Wang; Guo-Jie Brandon-Mong; Chen-Wei Li; Masae Horinouchi; Toshiaki Hayashi; Wael Ismail; Menghsiao Meng; Yi-Lung Chen; Yin-Ru Chiang SCIENCE OF THE TOTAL ENVIRONMENT 896, 165152
422023Transitions and trade-offs in regenerationLewin, TD; Luo, YJ Nature Ecology & Evolution 7, 1965-1966
432023Reciprocal transplant experiment reveals multiple factors influencing changes in coral microbial communities across climate zonesYa-Fan Chan; Yu-Hsiang Chen; Sheng-Ping Yu; Hsing-Ju Chen; Yoko Nozawa ; Sen-Lin Tang Science of The Total Environment 907(10), 167929
442023Redescription of the hispidoberycid, Hispidoberyx ambagiosus Kotlyar, 1981 from Taiwan, with comments on its morphology (Beryciformes, Stephanoberycoidei, Hispidoberycidae)Yo Su; Chien-Hsiang Lin ; Hsuan-Ching HoZOOKEYS 1182, 19-34
452023Early Pliocene otolith assemblages from the outer-shelf environment reveal the establishment of mesopelagic fish fauna over 3 million years ago in southwestern TaiwanChien-Hsiang Lin ; Siao-Man Wu; Chia-Yen Lin; Chi-Wei ChienSWISS JOURNAL OF PALAEONTOLOGY 143, 23
462023Potential individual and interactive effects of climate and land-cover changes on bats and implications for conservation planning: a case study in VietnamTuan, LQ; Thong, VD; Son, NT; Tu, VT; Tuan, TA; Luong, NT; Vy, NT; Thanh, HT; Huang, JC-C; Csorba, G; Görföl, T; Tuanmu, M-N Biodiversity and Conservation 32, 4481-4508
472023Ustilago maydis PR-1-like protein has evolved two distinct domains for dual virulence activitiesYu-Han Lin; Meng-Yun Xu; Chuan-Chih Hsu; Florensia Ariani Damei; Hui-Chun Lee; Wei-Lun Tsai; Cuong V. Hoang; Yin-Ru Chiang ; Lay-Sun Ma NATURE COMMUNICATIONS 14, 5755
482023New depth record for oval squid, Sepioteuthis lessoniana, egg capsules in a mesophotic coral ecosystem natural habitatChao-Yang Kuo; Chun-Yen Lin; Ming-Jay Ho ; Chaolun Allen Chen MARINE BIODIVERSITY 53, 68-68
492023Upcycling soybean pulp for sustainable amino acid and subsequent protein biomanufacturing via a one-pot thermophilic protease cascade treatmentGicana, RG; Huang, MH; Jia, TZ; Chiang, YR ; Wang, PHCHEMICAL ENGINEERING JOURNAL 474, 145925
502023Genetic differentiation and host usage of coral and fire coral-associated barnacles (Cirripedia: Pyrgomatinae and Wanellininae) across the Indian and Pacific OceansYu, M.-C.; M. Ganmanee; Y.-F. Tsao; B. K. K. Chan Zoological Journal of the Linnean Society 199(4), 871-881
512023Single-worm long-read sequencing reveals genome diversity in free-living nematodesLee, Yi-Chien; Ke, Huei-Mien; Liu, Yu-Ching; Lee, Hsin-Han; Wang, Min-Chen; Tseng, Yung-Che ; Kikuchi, Taisei; Tsai, Isheng Jason Nucleic Acids Research 51(15), 8035-8047
522023A global biodiversity observing system to unite monitoring and guide actionGonzalez, A; Vihervaara, P; Balvanera, P; Bates, AE; Bayraktarov, E; Bellingham, PJ; Bruder, A; Campbell, J; Catchen, MD; Cavender-Bares, J; Chase, J; Coops, N; Costello, MJ; Dornelas, M; Dubois, G; Duffy, EJ; Eggermont, H; Fernandez, N; Ferrier, S; Geller, GN; Gill, M; Gravel, D; Guerra, CA; Guralnick, R; Harfoot, M; Hirsch, T; Hoban, S; Hughes, AC; Hunter, ME; Isbell, F; Jetz, W; Juergens, N; Kissling, WD; Krug, CB; Le Bras, Y; Leung, B; Londoño-Murcia, MC; Lord, J-M; Loreau, M; Luers, A; Ma, K; MacDonald, AJ; McGeoch, M; Millette, KL; Molnar, Z; Mori, AS; Muller-Karger, FE; Muraoka, H; Navarro, L; Newbold, T; Niamir, A; Obura, D; O’Connor, M; Paganini, M; Pereira, H; Poisot, T; Pollock, LJ; Purvis, A; Radulovici, A; Rocchini, D; Schaepman, M; Schaepman-Strub, G; Schmeller, DS; Schmiedel, U; Schneider, FD; Shakya, MM; Skidmore, A; Skowno, AL; Takeuchi, Y; Tuanmu, M-N ; Turak, E; Turner, W; Urban, MC; Urbina-Cardona, N; Valbuena, R; van Havre, B; Wright, ENature Ecology & Evolution 7, 1947-1952
532023Jeju Island: a sentinel for tracking ocean warming impacts on high-latitude benthic communitiesLauriane Ribas-Deulofeu; Mathilde Loubeyres; Vianney Denis; Stéphane De Palmas; Sung-Jin Hwang; Seonock Woo; Jun-Im Song; Chaolun Allen Chen CORAL REEFS 42, 1097-1112
542023Bacterial Community Shifts during Polyp Bail-Out Induction in Pocillopora CoralsChuang, Po-Shun; Yamada, Yosuke; Liu, Po-Yu; Tang, Sen-Lin ; Mitarai, SatoshiMicrobiology Spectrum 11(4), e0025723
552023Gene co-option, duplication and divergence of cement proteins underpin the evolution of bioadhesives across barnacle life historiesWong, Y. H.; N. Dreyer; H.C. Liu; Y. Lan; J. J. Chen; J. Sun; W.‐P. Zhang; P.‐Y. Qian; B. K. K. Chan Molecular Ecology 32(18), 5071-5088
562023Chemical Characteristics and Spatiotemporal Variation of Marine Fine Particles for Clustered Channels of Air Masses Transporting toward Remote Background Sites in East AsiaYuan, C.S.; P.H. Yen; G.W. Lee; J.H. Ceng; Z.Y. Huang; K.C. Chiang; I.C. Du; Y.L. Tseng; K.Y. Soong; M.S. Jeng ENVIRONMENTAL POLLUTION 331(part 1), 121870
572023Evolution and Diversity of Bioluminescent FungiKe, Huei-Mien; Lu, Min R.; Chang, Chiung-Chih; Hsiao, Chen; Ou, Jie-Hao; Taneyama, Yuichi; Tsai, Isheng Jason The Mycota (MYCOTA, volume 14) (Switzerland : Springer)
582023Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus ArmillariaSahu, Neha; Indic, Boris; Wong-Bajracharya, Johanna; Merényi, Zsolt; Ke, Huei-Mien; Ahrendt, Steven; Monk, Tori-Lee; Kocsubé, Sándor; Drula, Elodie; Lipzen, Anna; Bálint, Balázs; Henrissat, Bernard; Andreopoulos, Bill; Martin, Francis M.; Bugge, Harder Christoffer; Rigling, Daniel; Ford, Kathryn L.; Foster, Gary D.; Pangilinan, Jasmyn; Papanicolaou, Alexie; Barry, Kerrie; LaButti, Kurt; Virágh, Máté; Koriabine, Maxim; Yan, Mi; Riley, Robert; Champramary, Simang; Plett, Krista L.; Grigoriev, Igor V.; Tsai, Isheng Jason ; Slot, Jason; Sipos, György; Plett, Jonathan; Nagy, László G.Nature Microbiology 8, 1668-1681
592023Effects of silent intervals on the extraction of human frequency-following responses using non-negative matrix factorizationGiordano, A.; Jeng, F.-C.; Black, T.; Bauer, S.; Carriero, A.; McDonald, K.; Lin, T.-H. ; Wang, C.-Y.PERCEPTUAL AND MOTOR SKILLS 130(5), 1834-1851
602023Spiralian genomics and the evolution of animal genome architectureLiao, IJY; Lu, TM ; Chen, ME; Luo, YJ Briefings in Functional Genomics 22(6), 498-508
612023Trophic ecology of crustacean endoparasites Petrarca and Baccalaureus (Ascothoracida, Thecostraca) in scleractinian and zoantharian coralsKolbasov, G. A.; A. K.Zalota; B. K. K. Chan Marine Ecology Progress Series 715, 69-78
622023Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencingYu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang Nucleic Acids Research 51(15), 7777-7797
632023Ocean temperature drove changes in the mesopelagic fish community at the edge of the Pacific Warm Pool over the past 460,000 yearsChien-Hsiang Lin ; Chih-Lin Wei; Sze Ling Ho; Li LoSCIENCE ADVANCES 9(27), eadf0656
642023Limits to the accurate and generalizable use of soundscapes to monitor biodiversitySethi, SS; Bick, A; Ewers, RM; Klinck, H; Ramesh, V; Tuanmu, M-N ; Coomes, DANature Ecology & Evolution 7, 1373-1378
652023Succession and Emergence of Corals in High-Latitude (Temperate) Areas of Eastern Asia into the FutureShashank Keshavmurthy; Takuma Mezaki; James Davis Reimer; Kwang-Sik Choi; Chaolun Allen Chen Coral Reefs of Eastern Asia under Anthropogenic Impacts (Springer Nature Switzerland AG 2 : Springer Cham)
662023Transitional Coral Ecosystem of Taiwan in the Era of Changing ClimateChao-Yang Kuo; Shashank Keshavmurthy; Ya-Yi Huang; Ming-Jay Ho; Hernyi Justin Hsieh; An-Tzi Hsiao; Wei-Cheng Lo; Yi-Chia Hsin; Chaolun Allen Chen Coral Reefs of Eastern Asia under Anthropogenic Impacts (Springer Nature Switzerland AG 2 : Springer Cham)
672023Self-Healable Spider Dragline Silk MaterialsChen, WC; Wang, RC; Yu, SK; Chen, JL; Kao, YH; Wang, TY ; Chang, PY; Sheu, HS; Chen, SC; Liu, WR; Yang, TI; Wu, HCAdvanced Functional Materials Early View
682023Studies of Vietnamese Pteridophyte Flora 2Cheng-Wei Chen; Tian-Chuan Hsu; Hoang Son Doan; Van Hai Do; Hong Truong Luu; Van Son Le; Yea-Chen Liu; Chia-Wei Li; Yao-Moan Huang; Kuo-Fang Chung Systematic Botany 48(2), 159-172
692023The rhodoliths in the mesophotic coral ecosystem of Green Island, TaiwanMing-Jay Ho ; Shih-Wei Wang; Chao-Yang Kuo; Chaolun Allen Chen 
702023A draft genome assembly of reef-building octocoral Heliopora coeruleaIp, Jack Chi-Ho; Ho, Ming-Hay ; Chan, Benny K. K. ; Qiu, Jian-WenScientific Data 10(1), 381
712023Host specificity and adaptive evolution in settlement behaviour of coral-associated barnacle larvae (Cirripedia: Pyrgomatidae)Yap, F.-C.; H.-N. Chen; B. K. K. Chan Scientific Reports 13(1), 9668
722023Baseline dynamics of Symbiodiniaceae genera and photochemical efficiency in corals from reefs with different thermal historiesCrystal J. McRae​; Shashank Keshavmurthy; Hung-Kai Chen; Zong-Min Ye; Pei-Jie Meng; Sabrina L. Rosset; Wen-Bin Huang; Chaolun Allen Chen ; Tung-Yung Fan​; Isabelle M. CôtéPEERJ 11, e15421
732023Higher temperature variability in deforested mountain regions impacts the competitive advantage of nocturnal speciesChan, Shih-Fan; Rubenstein, Dustin R.; Chen, I-Ching; Fan, Yu-Meng; Tsai, Hsiang-Yu; Zheng, Yuan-Wen; Shen, Sheng-Feng Proceedings of the Royal Society B: Biological Sciences 290(1999), 20230529
742023Phylogenetic background and taxonomic status of Crepidiastrum lanceolatum (Asteraceae) sold as a traditional vegetable in Okinawa Prefecture, Japan revealed by MIG-seq SNP dataGoro Kokubugata; Satoshi Kakishima; Takuro Ito; Yukiko Saito; Chikako Ishii; Kuo-Fang Chung ; Mina L. Labuguen; Aurea Lopez-Feliciano; Masatsugu YokotaBulletin of the National Museum of Nature and Science. Series B, Botany 49(2), 73-82
752023Molecular characterization of the nearly complete nuclear ribosomal DNA sequence of the Neotropical freshwater copepod Arctodiaptomus dorsalis (Marsh, 1907) (Copepoda, Calanoida, Diaptomidae)Guinto, SKP; Machida, RJ ; Papa, RDSCrustaceana 96(5), 407-421
762023Langbiangia, a new genus of Gesneriaceae endemic to Langbiang Plateau, southern Vietnam and a taxonomic endeavor to achieve key targets of the post-2020 global biodiversity frameworkHong Truong Luu; Chia-Lun Hsieh; Chia-Rong Chuang; Cheng-Wei Chen; Ngoc Toan Tran; Ngoc Long Vu; Kuo-Fang Chung PLOS ONE 18(5), e0284650
772023Integrative taxonomy, larval biology and functional morphology of the little known gall-forming coral endoparasite Petrarca (Thecostraca: Ascothoracida)Kolbasov, G. A.; A. S. Savchenko; M.-C. Yu; Y.-F. Tsao; M. Ganmanee; B. K. K. Chan Zoological Journal of the Linnean Society 198(3), 767-801
782023Fish otolith record reveals possible tropical-subtropical fish community in temperate Japan during the exceptionally warm Last Interglacial periodShota Mitsui; Chien-Hsiang Lin ; Hajime Taru; Kenichiro ShibataHISTORICAL BIOLOGY 36(5), 1007-1027
792023Environmental quality mediates the ecological dominance of cooperatively breeding birdsLin, Yu‐Heng; Chen, Ying‐Yu; Rubenstein, Dustin R.; Liu, Ming; Liu, Mark; Shen, Sheng‐Feng Ecology Letters 26(7), 1145-1156
802023Genomic architecture underlying morphological and physiological adaptation to high elevation in a songbirdLu, C.-W.; Huang, S.-T.; Cheng, S.-J.; Lin, C.-T.; Hsu, Y.-C.; Yao, C.-T.; Dong, F; Hung, C.-M. ; Kuo, H.-C.MOLECULAR ECOLOGY 32(9), 2234-2251
812023Systematics and biogeography of the Old World fern genus AntrophyumCheng-Wei Chen; Stuart Lindsay; Joel Nitta; Germinal Rouhan; Michael Sundue; Leon R. Perrie; Yao-Moan Huang; Wen-Liang Chiou; Kuo-Fang Chung CLADISTICS 39(), 249-272
822023Multiple Nucleocapsid Structural Forms of Shrimp White Spot Syndrome Virus Suggests a Novel Viral Morphogenetic PathwayHuang, Hui-Ju; Tang, Sen-Lin ; Chang, Yuan-Chih ; Wang, Hao-Ching; Ng, Tze Hann; Garmann, Rees F.; Chen, Yu-Wen; Huang, Jiun-Yan; Kumar, Ramya; Chang, Sheng-Hsiung; Wu, Shang-Rung; Chao, Chih-Yu; Matoba, Kyoko; Kenji, Iwasaki; Gelbart, William M.; Ko, Tzu-Ping; Wang, Hwei-Jiung Andrew; Lo, Chu-Fang; Chen, Li-Li; Wang, Han-ChingInternational Journal of Molecular Sciences 24(8), 7525
832023Microbial mat compositions and localization patterns explain the virulence of black band disease in coralsWada, Naohisa; Iguchi, Akira; Urabe, Yuta; Yoshioka, Yuki; Abe, Natsumi; Takase, Kazuki; Hayashi, Shuji; Kawanabe, Saeko; Sato, Yui; Tang, Sen-Lin ; Mano, Nobuhironpj Biofilms and Microbiomes 9(1), 15
842023Single-specimen systematics resolves the phylogeny and diversity conundrum of enigmatic crustacean y-larvaeDreyer, N.; F. Palero; M. J. Grygier; B. K. K. Chan ; J. OlesenMolecular Phylogenetics and Evolution 184, 107780
852023Antioxidant and anti-α-glucosidase activities of biotransformable dragon’s blood via predicted data mining approachWu, JY; Ding, HY; Wang, TY ; Cai, CZ; Chang, TSProcess Biochemistry 130, 166-173
862023Long-read genome sequencing of Abscondita cerata (Coleoptera: Lampyridae), the endemic firefly of TaiwanWang, TY ; Goh, KS; Wang, LJ; Wu, LL; Wang, FY; Wu, YWZoological Studies 62, 25
872023Cytological study of Begonia sections Flocciferae, Parvibegonia and Platycentrum (Begoniaceae) with Chromosome Numbers 2n=28 and 56Yoshiko Kono; Ching-I Peng ; Kazuo Oginuma; Hsun-An Yang; Kuo-Fang Chung CYTOLOGIA 88(1), 77-82
882023The mitochondrial genome of Isognomon nucleus and mitogenomics of pteriomorphia (Bivalvia: Autobranchia)Dreyer, N; de Mattos, FMG; Jain, D; Fong, C-L; De Vivo, M; Wen, YV; Huang, Y-S; Mwihaki, JK; Lee, H-H; Tsai, P-C; Tsao, Y-F; Chan, BKK ; Tsai, IJ ; Machida, RJ ; Wang, T-Y ; Wang, J Journal of Molluscan Studies 89(1), eyad003
892023Widespread sex ratio polymorphism in Caenorhabditis nematodesHuang, Y; Lo, Y-H; Hsu, J-C; Le, TS; Yang, F-J; Chang, T; Braendle, C; Wang, J ROYAL SOCIETY OPEN SCIENCE 10(3), 221636
902023Novel Ganoderma triterpenoid saponins from the biotransformation-guided purification of a commercial Ganoderma extractDing, HY; Wang, TY ; Wu, JY; Zhang, YR; Chang, TSJournal of Bioscience and Bioengineering 135(5), 402-410
912023Circulating androgen regulation by androgen-catabolizing gut bacteria in male mouse gutTsun-Hsien Hsiao; Chia-Hong Chou; Yi-Lung Chen; Po-Hsiang Wang; Guo-Jie Brandon-Mong; Tzong-Huei Lee; Tien-Yu Wu; Po-Ting Li; Chen-Wei Li; Yi-Li Lai; Yu-Lin Tseng; Chao-Jen Shih; Po-Hao Chen; Mei-Jou Chenb; Yin-Ru Chiang GUT MICROBES 15(1), 2183685
922023Weak gene–gene interaction facilitates the evolution of gene expression plasticityKuo, H.-C.; Yao, C.-T.; Liao, B.-Y.; Weng, M.-P.; Dong, F.; Hsu, Y.-C.; Hung, C.-M. BMC BIOLOGY 21, 57
932023Phylogenetic Relationships among Populations of Portulaca okinawensis (Portulacaceae) in the Ryukyu Archipelago of Japan Using MIG-seq SNP DataGoro Kokubugata; Satoshi Kakishima; Atsushi Abe; Koh Nakamura; Kuo-Fang Chung ; Masatsugu YokotaBulletin of the National Museum of Nature and Science. Series B, Botany 49(1), 33-40
942023Valorization of soybean pulp for sustainable α-ketoisocaproate production using engineered Bacillus subtilis whole-cell biocatalystHuang, E; Yan, JS; Gicana, RG; Chiang, YR ; Yeh, FI; Huang, CC; Wang, PHCHEMOSPHERE 322, 138200
952023Long-range Transport of Atmospheric Speciated Mercury from the Eastern Waters of Taiwan Island to Northern South China SeaYuan, C.S.; K.C. Chiang; P.H. Yen; J.H. Ceng; C.E. Lee; I.C. Du; K.Y. Soong; M.S. Jeng ENVIRONMENTAL POLLUTION 318, 120899
962023Using soundscapes to assess changes in coral reef social-ecological systemsTzu-Hao Lin ; Frederic Sinniger; Saki Harii; Tomonari AkamatsuOCEANOGRAPHY 36(1), 20-27
972023The contrary conservation situations of two local critically endangered species, Vaccinium emarginatum (Ericaceae) and Elatostema platyphyllum (Urticaceae), growing on the eastern edge of the distributionShibabayashi, Mayu; Shimizu, Taiga; Tokuhiro, Chinatsu; Suyama, Yoshihisa; Sakaguchi, Shota; Ito, Takuro; Yu, Chih-Chieh; Chung, Kuo-Fang ; Nagasawa, Jun’ichi; Shiuchi, Toshiaki; Kokubugata, Goro; Abe, Atsushi; Naiki, Akiyo; Nagano, Atsushi J.; Isagi, YujiFrontiers in Ecology and Evolution 11, 1093321
982023High-Quality Genome Sequences of Two Octocoral-Associated Bacteria, Endozoicomonas euniceicola EF212T and Endozoicomonas gorgoniicola PS125TChiou, Yu-Jing; Chen, Yu-Hsiang; Chiang, Pei-Wen; Chen, Hsing-Ju; Tang, Sen-Lin Microbiology Resource Announcements 12(1), 22
992023The Mitochondrial Genome of the Globally Invasive Barnacle Megabalanus coccopoma Darwin 1854 (Crustacea: Balanomorpha): Rearrangement and Phylogenetic Consideration within BalanomorphaZhang, M. J.; Y.F. Cai; N.J. Ji; B. K. K. Chan ; X. ShenDiversity-Basel 15(1), 117
1002023Cellular mechanisms underlying extraordinary sulfide tolerance in a crustacean holobiont from hydrothermal ventsChou, Pei-Hsuan; Hu, Marian Y.; Guh, Ying-Jey; Wu, Guan-Chung; Yang, Shan-Hua; Tandon, Kshitij; Shao, Yi-Ta; Lin, Li-Yih; Chen, Chi; Tseng, Kuang-Yu; Wang, Min-Chen; Zhang, Cheng-Mao; Han, Bor-Cheng; Lin, Ching-Chun; Tang, Sen-Lin ; Jeng, Ming-Shiou ; Chang, Ching-Fong; Tseng, Yung-Che PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 290(1990), 20221973
1012023Diversity of coral-associated pit crabs (Crustacea: Decapoda: Cryptochiridae) from Hong Kong, with description of two new species of Lithoscaptus A. Milne-Edwards, 1862Wong, K. J. H.; Y.-F.Tsao; J.-W. Qiu; B. K. K. Chan Frontiers in Marine Science 9, 1003321
1022023Temporospatial Variation, Chemical Composition, and Source Resolution of PM2.5 in the Southeastern Taiwan IslandYuan, C.S.; J.H. Ceng; P.H. Yen; K.C. Chiang; Y.L. Tseng.; K.W. Wong; M.S. Jeng Aerosol and Air Quality Research 23(1), 220350
1032023Chicken HOXC8 and HOXC10 genes may play a role in the altered skull morphology associated with the Crest phenotypeTsai, DY; Chen, JJ; Su, PC; Liu, IM; Yeh, SH; Chen, CK; Cheng, HC; Chen, CF; Li, WH ; Ng, CSJournal of experimental zoology. Part B, Molecular and developmental evolution 340(6), 392-402
1042023Horizontally Transferred DNA in the Genome of the Fungus Pyricularia oryzae is Associated With Repressive Histone ModificationsKobayashi, N; Dang, TA; Pham, KTM; Gomez, Luciano LB; Van Vu, B; Izumitsu, K; Shimizu, M; Ikeda, KI; Li, WH ; Nakayashiki, HMolecular biology and evolution 40(9), msad186
1052023Genome analysis of SARS-CoV-2 isolates from a population reveals the rapid selective sweep of a haplotype carrying many pre-existing and new mutationsBhattacharjee, MJ; Bhattacharya, A; Kashyap, B; Taw, MJ; Li, WH ; Mukherjee, AK; Khan, MRVirology journal 20(1), 201
1062023Genetic Assessment of Fertile F1 Hybrids between Two Hercules Beetles, Dynastes maya Hardy and D. grantii Horn (Scarabaeidae)Jen-Pan Huang ; Wei-Yun Chen; My Hanh LeZOOLOGICAL STUDIES 62, 13
1072023Testing the efficacy of different molecular tools for parasite conservation genetics: a case study using horsehair worms (Phylum: Nematomorpha)De Vivo, Mattia; Chen, Wei-Yun; Huang, Jen-Pan Parasitology 150(9), 842-851
1082023Lactobacillus plantarum isolated from kefir enhances immune responses and survival of white shrimp (Penaeus vannamei) challenged with Vibrio alginolyticusTseng, KC; Huang, HT; Huang, SN; Yang, FY; Li, WH ; Nan, FH; Lin, YJFish & shellfish immunology 135, 108661
1092023Rice GA3ox1 modulates pollen starch granule accumulation and pollen wall developmentHsieh, KT; Wu, CC; Lee, SJ; Chen, YH; Shiue, SY; Liao, YC; Liu, SH; Wang, IW; Tseng, CS; Li, WH ; Wang, CS; Chen, LJPloS one 18(10), e0292400
1102023Genomic tools for comparative conservation genetics among three recently diverged stag beetles (Lucanus, Lucanidae)De Vivo, Mattia; Chou, Min‐Hsun; Wu, Shu‐Ping; Kuan, Yi‐Hsiu; Chen, Wei‐Yun; Wang, Liang‐Jong; Morgan, Brett; Phang, Guan‐Jie; Huang, Jen-Pan Insect Conservation and Diversity 16(6), 853-869
1112023Transitional coral ecosystem of Taiwan in the era of changing climateChao-Yang Kuo; Shashank Keshavmurthy; Ya-Yi Huang; Min-Jay Ho ; Hernyi Justin Hsieh; An-Tzi Hsiao; Wei-Cheng Lo; Yi-Chia Hsin ; Chaolun Allen Chen Coral Reef of the Word: Transitional coral ecosystem in the East Asia
1122023Allometric scaling of interspecific RNA transcript abundance to extend the use of metatranscriptomics in characterizing complex communitiesMark Louie D. Lopez; Ya-ying Lin; Stephan Q Schneider; Chih-hao Hsieh; Fuh-Kwo Shiah; Ryuji J. Machida Molecular Ecology Resources 23(1), 52-63
1132023The genetic variation of a mitochondrial and two behaviour-related genes in invasive African Sacred Ibis (Threskiornis aethiopicus) populations in TaiwanKu, Y.-C.; Chen, Y.-C.; Hung, C.-M. ; Ng, C.- S.IBIS 165(2), 647-662
1142023An External Coincidence Model for the Lunar Cycle Reveals Circadian Phase-Dependent Moonlight Effects on Coral SpawningH Komoto; CH Lin; Y Nozawa ; A SatakeJOURNAL OF BIOLOGICAL RHYTHMS 38(2), 148-158
1152023The Aphelenchoides genomes reveal substantial horizontal gene transfers in the last common ancestor of free-living and major plant-parasitic nematodesLai, CK; Lee, YC; Ke, HM; Lu, MR; Liu, WA; Lee, HH; Liu, YC; Yoshiga, T; Kikuchi, T; Chen, PJ; Tsai, IJ Molecular ecology resources 23(4), 905-919
1162023Simultaneous detection of miRNA and mRNA at the single-cell level in plant tissuesWu, CC; Hsieh, KT; Yeh, SY; Lu, YT; Chen, LJ; Ku, MSB; Li, WH Plant biotechnology journal 21(1), 136-149
1172023Acoel single-cell atlas reveals expression dynamics and heterogeneity of adult pluripotent stem cellsHulett, RE; Kimura, JO; Bolaños, DM; Luo, YJ ; Rivera-Lopez, C; Ricci, L; Srivastava, MNature Communications 14, 2612
1182022Ustilago maydis PR-1-like protein has evolved two distinct domains for dual virulence activitiesYu-Han Lin; Meng-Yun Xu; Chuan-Chih Hsu ; Hui-Chun Lee; Wei-Lun Tsai; Florensia Damei; Cuong Hoang; Yin-Ru Chiang ; Lay-Sun MabioRxiv
1192022Inter-comparison of Chemical Fingerprint and Source Apportionment of Marine Fine Particles at Two Islands through the West and East Passages of the Taiwan IslandYen, P.H.; C.S. Yuan; J.H. Ceng; K.C. Chiang; Y.L. Tseng; K.Y. Soong; M.S. Jeng SCIENCE OF THE TOTAL ENVIRONMENT 851(part 2), 158313
1202022Novel molecular resources for single-larva barcoding of enigmatic crustacean y-larvaeDreyer, N; Palero, F; Grygier, M; Savchenko, A; Kolbasov, G; Machida, R ; Chan, B ; Olesen, JAuthorea Preprints
1212022What is conservation paleobiology? Tracking 20 years of research and developmentDillon, Erin M.; Pier, Jaleigh Q.; Smith, Jansen A.; Raja, Nussaïbah B.; Dimitrijević, Danijela; Austin, Elizabeth L.; Cybulski, Jonathan D.; De Entrambasaguas, Julia; Durham, Stephen R.; Grether, Carolin M.; Haldar, Himadri Sekhar; Kocáková, Kristína; Lin, Chien-Hsiang ; Mazzini, Ilaria; Mychajliw, Alexis M.; Ollendorf, Amy L.; Pimiento, Catalina; Regalado Fernández, Omar R.; Smith, Isaiah E.; Dietl, Gregory P.Frontiers in Ecology and Evolution 10, 1031483
1222022Plastid phylogenomics and plastome evolution in the morning glory family (Convolvulaceae)Wu, CS; Chen, CI; Chaw, SM Frontiers in Plant Science 13, 1061174
1232022Translocation of fungicides and their efficacy in controlling Phellinus noxius, the cause of brown root rot diseaseLiao, Ting-Zhi; Chen, Yu-Hsuan; Tsai, Jyh-Nong; Chao, Chieh; Huang, Tzu-Pi; Hong, Cheng-Fang; Wu, Zong-Chi; Tsai, Isheng Jason ; Lee, Hsin-Han; Klopfenstein, Ned Brian; Kim, Mee-Sook; Stewart, Jane E.; Atibalentja, Ndeme; Brooks, Fred E.; Cannon, Phil; Mohd, Farid Ahmad; Hattori, Tsutomu; Kwan, Hoi-Shan; Lam, Yau-Ching Regent; Ota, Yuko; Sahashi, Norio; Schlub, Robert L.; Shuey, Louise S.; Tang, Alvin M. C.; Chung, Chia-LinPlant Disease 107(7), 2039-2053
1242022Exploring marine ecosystem dynamics via underwater soundscapes.Tzu-Hao Lin 
1252022A synthesis of the external morphology of cypridiform larvae of Facetotecta (crustacea: Thecostraca) and the limits of the genus HansenocarisKolbasov, G. A.; Savchenko, A. S.; Dreyer, N.; Chan, B. K. K. ; Høeg, J. T.Ecology and Evolution 12(11), e9488
1262022Diversity and Distribution of Fiddler Crabs (Crustacea: Brachyura: Ocypodidae) in VietnamShih, H.T.; K.J.H. Wong; B.K.K. Chan ; T.S. Nguyen; V.T. Do; X.Q. Ngo; P.Y. HsuZOOLOGICAL STUDIES 61, 66
1272022Leaf Mycobiome and Mycotoxin Profile of Warm-Season Grasses Structured by Plant Species, Geography, and Apparent Black-Stroma Fungal StructureChen, Ko-Hsuan ; Marcón, Florencia; Duringer, Jennifer; Blount, Ann; Mackowiak, Cheryl; Liao, Hui-LingApplied and Environmental Microbiology 88(21), e00942-22
1282022Modeling the geographical distributions of Chordodes formosanus and its mantis hosts in Taiwan, with considerations for their niche overlapsDe Vivo, Mattia; Huang, Jen-Pan Ecology and Evolution 12(11), e9546
1292022Luminescent characteristics and mitochondrial COI barcodes of nine cohabitated Taiwanese firefliesGoh, KS; Wang, LJ; Ni, JH; Wang, TY PeerJ 10, e14195
1302022Soil Bacterial Community May Offer Solutions for Ginger CultivationWang, Chih-Wei; Wong, Jing-Wen Michelle; Yeh, Shu-Shuo; Eric, Hsieh Yunli; Tseng, Ching-Hung; Yang, Shan-Hua; Tang, Sen-Lin Microbiology Spectrum 10(5), 22
1312022Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalizationHoh, Daphne Z.; Lee, Hsin-Han; Wada, Naohisa; Liu, Wei-An; Lu, Min R.; Lai, Cheng-Kuo; Ke, Huei-Mien; Sun, Pei-Feng; Tang, Sen-Lin ; Chung, Wen-Hsin; Chen, Ying-Lien; Chung, Chia-Lin; Tsai, Isheng Jason BMC Biology 20(1), 236
1322022Investigation of asymptomatic infection of Phellinus noxius in herbaceous plantsChen, Chia-Yu; Wu, Zong-Chi; Liu, Tse-Yen; Yu, Shiang-Shiuan; Tsai, Jyh-Nong; Tsai, Yu-Chang; Tsai, Isheng Jason ; Chung, Chia-LinPhytopathology 113(3), 460-469
1332022A previously overlooked, highly diverse early Pleistocene elasmobranch assemblage from southern TaiwanLin, Chia-Yen; Lin, Chien-Hsiang ; Shimada, KenshuPeerJ 10, e14190
1342022Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to TaiwanChia-Rong Chuang; Chia-Lun Hsieh; Chi-Shan Chang; Chiu-Mei Wang; Danilo N. Tandang; Elliot M. Gardner; Lauren Audi; Nyree J. C. Zerega; Kuo-Fang Chung PLOS ONE 17(9), e0272680
1352022Long-read sequencing data reveals dynamic evolution of mitochondrial genome size and the phylogenetic utility of mitochondrial DNA in Hercules beetles (Dynastes; Scarabaeidae)Morgan, Brett; Wang, Tzi-Yuan ; Chen, Yi-Zhen; Moctezuma, Victor; Burgos, Oscar; Le, My Hanh; Huang, Jen-Pan Genome Biology and Evolution 14(10), evac147
1362022Fine intervals are required when using point intercept transects to assess coral reef statusChao-Yang Kuo; Chen-Han Tsai; Ya-Yi Huang; Wei Khang Heng; An-Tzi Hsiao; Hernyi Justin Hsieh; Chaolun Allen Chen FRONTIERS IN MARINE SCIENCE 9, 795512
1372022Cytological Study of Begonia Sect. Platycentrum (Begoniaceae) with Chromosome Number 2n=22Yoshiko Kono; Ching-I Peng ; Kazuo Oginuma; Hsun-An Yang; Yan Liu; Kuo-Fang Chung CYTOLOGIA 87(3), 255-263
1382022Chub movement is attracted by the collision sounds associated with spawning activitiesWang, Y-L; Lin, C-Y; Huang, S-P; Lee, C-Y; Tuanmu, M-N ; Wang, T-Y Zootaxa 5189(1), 308-317
1392022Genetic diversity of the regionally endangered Chinese ricefish (Oryzias sinensis) in Taiwan, with comments on its conservation statusHuang, SP; Wang, TY ; Lin, TY; Huang, HCZootaxa 5189(1), 283-307
1402022Plastomes of limestone karst gesneriad genera Petrocodon and Primulina, and the comparative plastid phylogenomics of GesneriaceaeHsieh, Chia-Lun; Wei-Bin Xu; Kuo-Fang Chung Scientific Reports 12, 15800
1412022Multigenerational inspections of environmental thermal perturbations promote metabolic trade-offs in developmental stages of tropical fishWang, MC; Furukawa, F; Wang, CW; Peng, HW; Lin, CC; Lin, TH ; Tseng, YC ENVIRONMENTAL POLLUTION 308, 119605
1422022Multiomic analyses reveal enriched glycolytic processes in β-myosin heavy chain-expressed cardiomyocytes in early cardiac hypertrophyYeh, Hsiao-hui; Chang, Yao-Ming ; Chang, Yu-Wang; Lu, Mei-Yeh Jade ; Chen, Yi-Hua; Lee, Chia-Che; Chen, Chien-Chang Journal of Molecular and Cellular Cardiology Plus 1, 100011
1432022Systematics and biogeography of fiddler crabs – a special issue in Zoological StudiesShih, H.-T.; B. K. K. Chan ZOOLOGICAL STUDIES 61, 64
1442022Redescription of Lophiodes lugubris (Alcock, 1894), with the largest record of Lophiodes triradiatus (Lloyd, 1909) from the South China Sea (Lophiiformes: Lophiidae)HO, HSUAN-CHING; LIN, CHIEN-HSIANG Zootaxa 5189(1), 138-145
1452022Origin and Evolution of Nitrogen Fixation in ProkaryotesPi, HW; Lin, JJ; Chen, CA; Wang, PH; Chiang, YR ; Huang, CC; Young, CC; Li, WH Molecular biology and evolution 39(9), msac181
1462022Learning from the past is not enough to survive present and future bleaching threshold temperaturesShashank Keshavmurthy; Ting-Ru Chen; Pei-Jen Liu; Jih-Terng Wang; Chaolun Allen Chen SCIENCE OF THE TOTAL ENVIRONMENT 852, 158379
1472022Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cellsLiu, Wen-Yu; Yu, Chun-Ping; Chang, Chao-Kang; Chen, Hsiang-June; Li, Meng-Yun; Chen, Yi-Hua; Shiu, Shin-Han; Ku, Maurice S. B.; Tu, Shih-Long ; Lu, Mei-Yeh Jade ; Li, Wen-Hsiung Proceedings of the National Academy of Sciences of the United States of America 119(35), e2208795119
1482022A hybrid capture bait set for BegoniaMichel, T.; Tseng, Y.-H.; Wilson, H.; Chung, K.-F. ; Kidner, C.Edinburgh Journal of Botany 79, e409
1492022Begonia Hemicardia (sect. Petermannia, Begoniaceae), A Resurrected Heterotypic Synonym And Nomen NudumRubite, R. R.; Salcedo, J. C.; Ubaldo, D. B. H.; Peng, C.-I.; Chung, K.-F. ; Evangelista, L.; Hughes, M.Edinburgh Journal of Botany 79, e403
1502022Insights into the evolution of the chloroplast genome and the phylogeny of BegoniaTseng, Y.-H.; Hsieh, C.-L.; Campos-Dominguez, L.; Hu, A.-Q.; Chang, C.-C.; Hsu, Y.-T.; Kidner, C. A.; Hughes, M.; Moonlight, P. W.; Hung, C.-H.; Wang, Y.-C.; Wang, Y.-T.; Liu, S.-H.; Girmansyah, D.; Chung, K.-F. Edinburgh Journal of Botany 79, e408
1512022Resolving phylogenetic and taxonomic conflict in BegoniaK.-F. Chung ; Begonia Phylogeny GroupEdinburgh Journal of Botany 79, e1928
1522022Bioactive pulvinones from a marine algicolous fungus Aspergillus terreus NTU243Hsiao, G; Chi, WC; Chang, CH; Chiang, YR ; Fu, YJ; Lee, THPHYTOCHEMISTRY 200, 113229
1532022Exploring intra- and inter-specific variations of dolphin whistles via machine learning.Anita Weng; Hsin-Yi Yu; Tzu-Hao Lin 
1542022The role of a synanthropic bird in the nest niche expansion of a secondary cavity nester to man-made structuresGuo, J.-C.; Tsai, J.-S.; Wang, J.-S.; Lin, Y.-W.; Shaner, P.-J.; Hung, C.-M. Ecology & Evolution 12, e9188
1552022The teenage years of yeast population genomics — trace history, admixing and getting wilderTsai, Isheng Jason CURRENT OPINION IN GENETICS & DEVELOPMENT 75, 101942
1562022soundscape_IR: A source separation toolbox for exploring acoustic diversity in soundscapesYi-Jen Sun; Shih-Ching Yen; Tzu-Hao Lin METHODS IN ECOLOGY AND EVOLUTION 13(11), 2347-2355
1572022Distinguishing Long-Discussed Cryptic Species of the Epibiotic Goose-Neck Barnacle of the Genus Conchoderma (Thoracicalcarea: Lepadidae) with Integrative TaxonomyChan, B. K. K. ; Chen, Y.-H.Diversity 14(8), 593
1582022Editorial: Variance matters: Individual differences and their consequences for natural selection within and among coral holobiontsParkinson, John Everett; Tang, Sen-Lin ; Denis, VianneyFrontiers in Ecology and Evolution 10, 977844
1592022Timing of final oocyte maturation in Acropora and merulinid coralsTzu-Yu Lai; Vianney Denis; Yoko Nozawa CORAL REEFS 41, 1379-1387
1602022Contrasting vertical distributions of recent planktic foraminifera off Indonesia during the southeast monsoon: implications for paleoceanographic reconstructionsTapia, Raúl; Ho, Sze Ling; Wang, Hui-Yu ; Groeneveld, Jeroen; Mohtadi, MahyarBiogeosciences 19(13), 3185-3208
1612022Valorization of fish waste and sugarcane bagasse for Alcalase production by Bacillus megaterium via a circular bioeconomy modelGicana, RG; Yeh, FI; Hsiao, TH; Chiang, YR ; Yan, JS; Wang, PHJOURNAL OF THE TAIWAN INSTITUTE OF CHEMICAL ENGINEERS 135, 104358
1622022Variable responses to chronic and acute elevated temperature of three coral species from reefs with distinct thermal regimesCrystal J. McRae; Shashank Keshavmurthy; Pei-Jie Meng; Sabrina L. Rosset; Wen-Bin Huang; Chaolun Allen Chen ; Tung-Yung Fan; Isabelle M. CôtéMarine Biology 169, 97
1632022High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillataNaohisa Wada; Ming-Tsung Hsu; Kshitij Tandon; Silver Sung-Yun Hsiao; Hsing-Ju Chen; Yu-Hsiang Chen; Pei-Wen Chiang; Sheng-Ping Yu; Chih-Ying Lu; Yu-Jing Chiou; Yung-Chi Tu; Xuejiao Tian; Bi-Chang Chen ; Der-Chuen Lee ; Hideyuki Yamashiro; David G Bourne; Sen-Lin Tang Science advances 8(27), eabo2431
1642022Stomatal clustering in Begonia improves water use efficiency by modulating stomatal movement and leaf structureMeng-Ying Tsai; Chi Kuan; Zheng-Lin Guo; Hsun-An Yang; Kuo-Fang Chung ; Chin-Min Kimmy Ho Plant-Environment Interaction 3(4), 141-154
1652022Living on fire: Deactivating fire coral polyps for larval settlement and symbiosis in the fire coral-associated barnacle Wanella milleporae (Thoracicalcarea: Wanellinae)Yap, F.-C.; J. T. Høeg; B. K. K. Chan Ecology and Evolution 12(7), e9057
1662022Application of Biotransformation-Guided Purification in Chinese Medicine: An Example to Produce Butin from LicoriceWu, JY; Ding, HY; Wang, TY ; Cai, CZ; Chang, TSCatalysts 12(7), 718
1672022Cytological Study of Begonia Sections Petermannia and Haagea (Begoniaceae): Chromosome Evolution for 2n=30Yoshiko Kono; Ching-I Peng ; Kazuo Oginuma; Rosario R. Rubite; Hsun-An Yang; Kuo-Fang Chung CYTOLOGIA 87(2), 169-176
1682022Enzymatic Synthesis of Novel and Highly Soluble Puerarin Glucoside by Deinococcus geothermalis AmylosucraseDing, HY; Wang, TY ; Wu, JY; Tsai, YL; Chang, TSMolecules 27(13), 4074
1692022Microbiome Restructuring: Dominant Coral Bacterium Endozoicomonas Species Respond Differentially to Environmental ChangesTandon, Kshitij; Chiou, Yu-Jing; Yu, Sheng-Ping; Hsieh, Hernyi Justin; Lu, Chih-Ying; Hsu, Ming-Tsung; Chiang, Pei-Wen; Chen, Hsing-Ju; Wada, Naohisa; Tang, Sen-Lin mSystems e00359-22
1702022Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculumMattia De Vivo; Hsin-Han Lee; Yu-Sin Huang; Niklas Dreyer; Chia-Ling Fong; Felipe Monteiro Gomes de Mattos; Dharmesh Jain; Yung-Hui Victoria Wen; John Karichu Mwihaki; Tzi-Yuan Wang ; Ryuji J Machida ; John Wang ; Benny KK Chan ; Isheng Jason Tsai Scientific Reports 12(1), 9973
1712022C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8Wu, Yun-Zhe; Jiang, Hang-Shiang; Han, Hsiao-Fen; Li, Po-Hsuan; Lu, Min R.; Tsai, Isheng Jason ; Wu, Yi-Chun Developmental Biology 486, 96-108
1722022Functional connections between bird eggshell stiffness and nest characteristics through risk of egg collision in nestsHung, C-M ; Tsao, S-H; Chiang, P-L; Wu, S-P; Tuanmu, M-N ; Juang, J-YEcology Letters 25(6), 1421-1431
1732022In Vivo evidence of single 13C and 15N isotope–labeled methanotrophic nitrogen-fixing bacterial cells in rice rootsHara, Shintaro; Wada, Naohisa; Hsiao, Sliver Sung-Yun ; Zhang, Meng; Bao, Zhihua; Iizuka, Yoshiyuki ; Lee, Der-Chuen ; Sato, Shusei; Tang, Sen-Lin ; Minamisawa, KiwamumBio 13(3), e0125522
1742022Population genetics and demography of the coral-killing cyanobacteriosponge, Terpios hoshinota, in the Indo-West PacificChow, Savanna Wenhua; Keshavmurthy, Shashank; Reimer, James Davis; de Voogd, Nicole; Huang, Hui; Wang, Jih-Terng; Tang, Sen-Lin ; Schupp, Peter J.; Tan, Chun Hong; Liew, Hock-Chark; Soong, Keryea; Subhan, Beginer; Madduppa, Hawis; Chen, Chaolun Allen PeerJ 10, e13451
1752022Novel Glycosylation by Amylosucrase to Produce Glycoside AnomersWu, JY; Ding, HY; Luo, SY; Wang, TY ; Tsai, YL; Chang, TSBiology 11(6), 822
1762022A multi-step nitrifying microbial enrichment to remove ammonia and nitrite in brackish aquaculture systemsTuyet, Dao Thi Anh; Hiep, Le Minh; Binh, Ha Thi; Huyen, Le Thanh; Tang, Sen-Lin ; Chiang, Pei-Wen; Hao, Do ManhBiodegradation 33(4), 373-388
1772022First Skeletal Fossil Record of the Red Seabream Pagrus major (Sparidae, Perciformes) from the Late Pleistocene of Subtropical West Pacific, Southern TaiwanLin, C.-H. ; Ou, H.-Y.; Lin, C.-Y.; Chen, H.-M.Zoological Studies 61, 10
1782022Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineagesLee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J Genome Research 32(5), 864-877
1792022SILIC: A cross database framework for automatically extracting robust biodiversity information from soundscape recordings based on object detection and a tiny training datasetWu, S-H; Chang, H-W; Lin, R-S; Tuanmu, M-N Ecological Informatics 68, 101534
1802022Integrative taxonomy of crustacean y-larvae (Thecostraca: Facetotecta) using laboratory-rearing and molecular analyses of single specimens, with the description of a new vermiform speciesOlesen, J.; N. Dreyer; F. Palero; D. Eibye-Jacobsen; Y. Fujita; B. K. K. Chan ; M. J. GrygierZoological Journal of the Linnean Society, zlac020
1812022Non-negative matrix factorization improves the efficiency of recording frequency-following responses in normal-hearing adults and neonatesFuh-Cherng Jeng; Tzu-Hao Lin ; Breanna N. Hart; Karen Montgomery-Reagan; Kalyn McDonaldInternational Journal of Audiology early view
1822022Scraping and grazing herbivorous/detritivorous fish display opposite feeding behaviours under different protection regulationsNathan William Price; Kao-Sung Chen; Chaolun Allen Chen ; Colin Kuo-Chang WenMarine Biology Research 17(9-10), 876-891
1832022Autochthony and isotopic niches of benthic fauna at shallow-water hydrothermal ventsWang, T.-W.; D. C. P. Lau; T.-Y. Chan; B. K. K. Chan Scientific Reports 12(1), 6248
1842022Changes in marine resource consumption over the past 5000 years in southwestern Taiwan revealed by fish otolithsLin, Chien-Hsiang ; Wang, Yen-Chun; Ribas-Deulofeu, Lauriane; Chang, Chih-Wei; Li, Kuang-Ti JOURNAL OF ARCHAEOLOGICAL SCIENCE 42, 103400
1852022Phylogeny and shell form evolution of the hydrothermal vent asymmetrical barnacles (Cirripedia, Thoracicalcarea, Neoverrucidae)Kim, S.-J.; W.-K. Lee; S.-J. Ju; B. K. K. Chan Molecular Phylogenetics and Evolution 169, 107391
1862022Omics and mechanistic insights into di-(2-ethylhexyl) phthalate degradation in the O2-fluctuating estuarine sedimentsWang, PH; Chen, YL; Wu, TY; Wu, YW; Wang, TY ; Shih, CJ; Wei, STS; Lai, YL; Liu, CX; Chiang, YR Chemosphere 299, 134406
1872022High migratory propensity constitutes a single stock of an exploited cutlassfish species in the Northwest Pacific: A microsatellite approachGuo, Yu-Hong; Halasan, Lorenzo C.; Wang, Hui-Yu ; Lin, Hsiu-ChinPLOS ONE 17(3), e0265548
1882022Causal networks of phytoplankton diversity and biomass are modulated by environmental contextChun-Wei Chang; Takeshi Miki; Hao Ye; Sami Souissi; Rita Adrian; Orlane Anneville; Helen Agasild; Syuhei Ban; Yaron Be’eri-Shlevin; Yin-Ru Chiang ; Heidrun Feuchtmayr; Gideon Gal; Satoshi Ichise; Maiko Kagami; Michio Kumagai; Xin Liu; Shin-Ichiro S. Matsuzaki; Marina M. Manca; Peeter Nõges; Roberta Piscia; Michela Rogora; Fuh-Kwo Shiah ; Stephen J. Thackeray; Claire E. Widdicombe; Jiunn-Tzong Wu ; Tamar Zohary; Chih-hao HsiehNATURE COMMUNICATIONS 13, 1140
1892022Identification of essential β-oxidation genes and corresponding metabolites for oestrogen degradation by actinobacteriaTsun-Hsien Hsiao; Tzong-Huei Lee; Meng-Rong Chuang; Po-Hsiang Wang; Menghsiao Meng; Masae Horinouchi; Toshiaki Hayashi; Yi-Lung Chen; Yin-Ru Chiang MICROBIAL BIOTECHNOLOGY 15(3), 949-966
1902022Discontinuity of Diurnal Temperature Range Along Elevated RegionsJang, Yi-Shin; Shen, Sheng-Feng ; Juang, Jehn-Yih; Huang, Cho-ying; Lo, Min-HuiGeophysical Research Letters 49(6), e2021GL097551
1912022Bacterial communities in coral offspring vary between in situ and ex situ spawning environmentsJia-Ho Shiu; Che-Hung Lin; Aziz Mulla; Viet Do Hung Dang; Chia-Lin Fong; Yoko Nozawa FRONTIERS IN MARINE SCIENCE 9, 796514
1922022Barnacle Epibiosis on Sea Turtles in Korea: A West Pacific Region With Low Occurrence and Intensity of Chelonibia testudinaria (Cirripedia: Chelonibiidae)Kim, H. K.; B. K. K. Chan ; C. Yi; I.-H. Kim; Y. N. ChoiFrontiers in Ecology and Evolution 10, 785692
1932022Sounding the Call for a Global Library of Underwater Biological SoundsMiles James Parsons; Tzu-Hao Lin ; T. Aran Mooney; Christine Erbe; Francis Juanes; Marc Lammers; Songhai Li; Simon Linke; Audrey Looby; Sophie L Nedelec; Ilse Catharina Van Opzeeland; Craig Aaron Radford; Aaron N. Rice; Laela Sayigh; Jenni Stanley; Edward Urban; Lucia Di IorioFrontiers in Ecology and Evolution 10, 810156
1942022Domestication obscures genomic estimates of population historyLu, C.-W.; Yao, C.-T.; Hung, C.-M. MOLECULAR ECOLOGY 31(3), 752-766
1952022A dated molecular phylogeny and biogeographical analysis reveals the evolutionary history of the trans-pacifically disjunct tropical tree genus Ormosia (Fabaceae)Benjamin M. Torke; Domingos B.O.S. Cardoso; Hsuan Chang; Shi-Jin Li; Miao Niue; R. Toby Pennington; Charles H. Stirton; Wei-Bin Xu; Charles E. Zartman; Kuo-Fang Chung MOLECULAR PHYLOGENETICS AND EVOLUTION 166, 107329
1962022Population Genetic Differentiation on the Hydrothermal Vent Crabs Xenograpsus testudinatus along Depth and Geographical Gradients in the Western PacificYang, C.-H.; T.-W. Wang; P. K. L. Ng; T.-Y. Chan; Y.-Y. Lin; B. K. K. Chan Diversity 14(3), 162
1972022Reproductive Span of Caenorhabditis Elegans is Extended by Microbacterium Sp.Le, TS; Nguyen, THG; Ha, BH; Huong, BTM; Nguyen, TTH; Vu, KD; Ho, CT; Wang, J JOURNAL OF NEMATOLOGY 54(1), 20220010
1982022Plastome phylogenomics of Allaeanthus, Broussonetia and Malaisia (Dorstenieae, Moraceae) and the origin of B. × kazinokiWen-Hsi Kuo; Shih-Hui Liu; Chiung-Chih Chang; Chia-Lun Hsieh; Yi-Hsuan Li; Takuro Ito; Hyosig Won; Goro Kokubugata; Kuo-Fang Chung JOURNAL OF PLANT RESEARCH 135, 203-220
1992022Historical Connectivity and Demography of the Ferocious Reef Crab, Eriphia ferox (Crustacea; Eriphiidae), Demonstrate That Taoyuan Algal Reef Is an Essential Population Source Along the East Taiwan StraitMu-Han Chen; Ya-Yi Huang; Bi-Ying Huang; Hernyi Justin Hsieh; Jen Nie Lee; Mei Lin Neo; Hironobu Fukami; Chaolun Allen Chen Frontiers in Marine Science 8, 799989
2002022Temporal Compositional Shifts in an Activated Sludge Microbiome during Estrone BiodegradationAlDhafiri, S; Chiang, YR ; EL Nayal, AM; Abed, RMM; Abotalib, N; Wael, IsmailEnvironmental Science and Pollution Research 29, 32702-32716
2012022Mahonia vs. Berberis Unloaded: Generic Delimitation and Infrafamilial Classification of Berberidaceae Based on Plastid PhylogenomicsChia-Lun Hsieh; Chih-Chieh Yu; Yu-Lan Huang; Kuo-Fang Chung FRONTIERS IN PLANT SCIENCE 12, 720171
2022022Species-Specific Flash Patterns Track the Nocturnal Behavior of Sympatric Taiwanese FirefliesGoh, KS; Lee, CM; Wang, TY Biology-Basel 11(1), 58
2032022ChiroVox: a public library of bat callsGörföl, T; Huang, JC-C; Csorba, G; Győrössy, D; Estók, P; Kingston, T; Szabadi, KL; McArthur, E; Senawi, J; Furey, NM; Tu, VT; Thong, VD; Khan, FAA; Jinggong, ER; Donnelly, M; Kumaran, JV; Liu, J-N; Chen, S-F; Tuanmu, M-N ; Ho, Y-Y; Chang, H-C; Elias, N-A; Abdullah, N-I; Lim, L-S; Squire, CD; Zsebők, SPEERJ 10, e12445
2042022Biogeography and Biodiversity of the Intertidal Barnacle Tetraclita Species in the Gulf of Thailand and Andaman Sea – Influences of Oceanographic Currents and Pleistocene GlaciationsChan, B. K. K. ; Y.-F. Tsao; K. Wangkulangkul; K. Amjud; W. SukparangsiFrontiers in Marine Science 8, 774041
2052022Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yieldYeh, Su-Ying; Lin, Hsin-Hung; Chang, Yao-Ming ; Chang, Yu-Lun; Chang, Chao-Kang; Huang, Yi-Cin; Ho, Yi-Wen; Lin, Chu-Yin; Zheng, Jun-Ze; Jane, Wann-Neng ; Ng, Chun-Yeung; Lu, Mei-Yeh ; Lai, I-Ling; To, Kin-Ying ; Li, Wen-Hsiung ; Ku, Maurice S BPlant physiology 188(1), 442-459
2062022Crown-of-thorns starfish outbreak at Taiping Island (Itu Aba), Spratlys, South China SeaHeng, Wei Khang; Ho, Ming-Jay ; Kuo, Chao-Yang; Huang, Ya-Yi; Ko, Chia-Ying; Jeng, Ming-Shiou ; Chen, Chaolun Allen Bulletin of Marine Science 98(1), 101-102
2072022Elevational plumage divergence in the Rufous-capped Babbler (Cyanoderma ruficeps) on a mountainous islandFang, Y.-T.; Yao, C.-T.; Hsu, Y.-C.; Hung, C.-M. IBIS 164(1), 151-167
2082022TaiwanChao-yang Kuo; Ming-Jay Ho ; Chien-Hsun Chen; Hernyi Justin Hsieh; Ming-Shiou Jeng; Tung-Yun Fang; Chang-Feng Dai; Keryea Soong; Jiang-Shiou Huang; Chaoluan Allen ChenStatus and Trends of East Asian Coral Reefs 1983-2019 (Global Coral Reef Monitoring Net : Global Coral Reef Monitoring Network, East Asia Region)
2092022Erratum to: New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approachesBucklin, A; Peijnenburg, KTCA; Kosobokova, K; Machida, RJ ICES Journal of Marine Science 79(1), 245-245
2102022A Scoping Review of Bryophyte Microbiota: Diverse Microbial Communities in Small Plant PackagesChen, Ko-Hsuan ; Nelson, JessicaJournal of Experimental Botany, erac191
2112022Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among DucksNg, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason Genome Biology and Evolution 14(6), evac083
2122022Second-generation bioethanol production from phytomass after phytoremediation using recombinant bacteria-yeast co-cultureTusher, TR; Chang, JJ; Saunivalu, MI; Wakasa, S; Li, WH ; Huang, CC; Inoue, C; Chien, MFFuel 326, 124975-124975
2132022Four-Year Field Survey of Black Band Disease and Skeletal Growth Anomalies in Encrusting Montipora spp. Corals around Sesoko Island, OkinawaDas, Rocktim Ramen; Wada, Haruka; Masucci, Giovanni Diego; Singh, Tanya; Tavakoli-Kolour, Parviz; Wada, Naohisa; Tang, Sen-Lin ; Yamashiro, Hideyuki; Reimer, James DavisDiversity 14(1), 32
2142022A First Insight Into the Heat-Induced Changes in Proteomic Profiles of the Coral Symbiotic Bacterium Endozoicomonas montiporaeChan, Ya-Fan; Chen, Chia-Yu; Lu, Chih-Ying; Tu, Yung-Chi; Tandon, Kshitij; Shikina, Shinya; Tang, Sen-Lin Frontiers in Marine Science 9, 808132
2152022Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast diseaseLo, KL; Chen, YN; Chiang, MY; Chen, MC; Panibe, JP; Chiu, CC; Liu, LW; Chen, LJ; Chen, CW; Li, WH ; Wang, CSRice(New York, N.Y.) 15, 2
2162022phiC31 integrase for recombination-mediated single-copy insertion and genome manipulation in Caenorhabditis elegansYang, Fang-Jung; Chen, Chiao-Nung; Chang, Tiffany; Cheng, Ting-Wei; Chang, Ni-Chen; Kao, Chia-Yi; Lee, Chih-Chi; Huang, Yu-Ching; Hsu, Jung-Chen; Li, Jengyi; Lu, Meiyeh J ; Chan, Shih-Peng; Wang, John GENETICS 220(2), iyab206
2172022The brown root rot fungus Phellinus noxius affects microbial communities in different root-associated niches of Ficus treesLiu, Tse‐Yen; Chen, Chao‐Han; Yang, Yu‐Liang ; Tsai, Isheng J. ; Ho, Ying‐Ning; Chung, Chia‐LinEnvironmental microbiology 24(1), 276-297
2182022Yeasts from temperate forestsMozzachiodi, Simone; Bai, Feng‐Yan; Baldrian, Petr; Bell, Graham; Boundy‐Mills, Kyria; Buzzini, Pietro; Čadež, Neža; Cubillos, Francisco A.; Dashko, Sofia; Dimitrov, Roumen; Fisher, Kaitlin J.; Gibson, Brian; Gouliamova, Dilnora; Greig, Duncan; Heistinger, Lina; Hittinger, Chris Todd; Jecmenica, Marina; Koufopanou, Vassiliki; Landry, Christian R.; Mašínová, Tereza; Naumova, Elena S.; Opulente, Dana; Peña, Jacqueline J.; Petrovič, Uroš; Tsai, Isheng Jason ; Turchetti, Benedetta; Villarreal, Pablo; Yurkov, Andrey; Liti, Gianni; Boynton, PrimroseYeast 39(1-2), 4-24
2192022Possible stochastic sex determination in Bursaphelenchus nematodesShinya, Ryoji; Sun, Simo; Dayi, Mehmet; Tsai, Isheng Jason ; Miyama, Atsushi; Chen, Anthony Fu; Hasegawa, Koichi; Antoshechkin, Igor; Kikuchi, Taisei; Sternberg, Paul W.Nature Communications 13, 2574
2202022Comparative transcriptomics of fungal endophytes in co-culture with their moss host Dicranum scoparium reveals fungal trophic lability and moss unchanged to slightly increased growth ratesChen, Ko-Hsuan ; Liao, Hui-Ling; Arnold, A. Elizabeth; Korotkin, Hailee B.; Wu, Steven H.; Matheny, P. Brandon; Lutzoni, FrançoisNew Phytologist 234(5), 1832-1847
2212022Identifying mutations in sd1, Pi54 and Pi-ta, and positively selected genes of TN1, the first semidwarf rice in Green RevolutionPanibe, JP; Wang, L; Lee, YC; Wang, CS; Li, WH Botanical studies 63(1), 9
2222022Mycobiome detection from a single subterranean gametophyte using metabarcoding techniquesChen, Ko-Hsuan ; Xie, Qiao-Yi; Chang, Chiung-Chih; Kuo, Li-YaungAPPLICATIONS IN PLANT SCIENCES 10(2), e11461
2232022Extra high superoxide dismutase in host tissue is associated with improving bleaching resistance in “thermal adapted” and Durusdinium trenchii-associating coralWang, Jih-Terng; Wang, Yi-Ting; Chen, Chaolun Allen ; Meng, Pei-Jei; Tew, Kwee Siong; Chiang, Pei-Wen; Tang, Sen-Lin PeerJ 10, e12746
2242022Ocean currents may influence the endolithic bacterial composition in coral skeletonsPo-Yu Liu; Sung-Yin Yang; Chih-Ying Lu; Naohisa Wada; Stéphane De Palmas; Shu-Shuo Yeh; Hideyuki Yamashiro; Sen-Lin Tang ; Shan-Hua YangFrontiers in Marine Science 9, 850984
2252022Cooperation and Lateral Forces: Moving Beyond Bottom-Up and Top-Down Drivers of Animal Population DynamicsChen, Ying-Yu; Rubenstein, Dustin R.; Shen, Sheng-Feng Frontiers in Psychology 13, 768773
2262022Safety Assessment of 3S, 3'S Astaxanthin Derived from Metabolically Engineered K. marxianusSamuel, SY; Wang, HD; Huang, MY; Cheng, YS; Chen, JR; Li, WH ; Chang, JJAntioxidants 11(11), 2288
2272022Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungiKeuler, Rachel; Jensen, Jacob; Barcena-Peña, Alejandrina; Grewe, Felix; Thorsten, Lumbsch H.; Huang, Jen-Pan ; Leavitt, Steven D.Molecular Phylogenetics and Evolution 174, 107543
2282022Middle and late Eocene fish otoliths from the eastern and southern USALin, Chien-Hsiang ; Nolf, DirkEuropean Journal of Taxonomy 814, 1-122
2292022Evolution of mitochondrial RNA editing in extant gymnospermsWu, CS; Chaw, SM Plant J 111(6), 1676-1687
2302022Comparative Phylogeography in the Taiwan–Luzon Volcanic Belt Indicates Fast Diversification History of Pachyrhynchus Weevils (Coleoptera: Curculionidae)Ye, Yan-Jhih; Huang, Jen-Pan ; Nguyen, Hung N; Villanueva, Reagan Joseph T; Amarga, Ace Kevin S; Tseng, Hui-YunInsect Systematics and Diversity 6(6), 4
2312022Testing the Effect of Sampling Effort on Inferring Phylogeographic History in Psolodesmus mandarinus (Calopterygidae, Odonata)Wang, Liang-Jong; Chou, Yen-Wei; Huang, Jen-Pan Diversity-Basel 14(10), 809
2322022Contrasting patterns in the early stage of SARS-CoV-2 evolution between humans and minksTai, JH; Hsiao-Yu, Sun; Tseng, YC; Li, GG; Chang, SY; Yeh, SH; Chen, PJ; Chaw, SM ; Wang, HYMolecular Biology and Evolution 39(9), msac156
2332022Dietary utilization drives the differentiation of gut bacterial communities between specialist and generalist drosophilid fliesChen, J.-S.; S.-C. Tsaur; C.-T. Ting; S. Fang Microbiology Spectrum 10(4), e01418-22
2342022The Earth BioGenome Project 2020: Starting the clockLewin, Harris A.; Richards, Stephen; Aiden, Erez Lieberman; Allende, Miguel L.; Archibald, John M.; Bálint, Miklós; Barker, Katharine B.; Baumgartner, Bridget; Belov, Katherine; Bertorelle, Giorgio; Blaxter, Mark L.; Cai, Jing; Caperello, Nicolette D.; Carlson, Keith; Castilla-Rubio, Juan Carlos; Chaw, Shu-Miaw ; Chen, Lei; Childers, Anna K.; Coddington, Jonathan .; Conde, Dalia A.; Corominas, Montserrat; Crandall, Keith A.; Crawford, Andrew J.; DiPalma, Federica; Durbin, Richard; Ebenezer, ThankGod E.; Edwards, Scott V.; Fedrigo, Olivier; Flicek, Paul; Formenti, Giulio; Gibbs, Richard A.; Gilbert, Marcus Thomas Pius; Goldstein, Melissa M.; Graves, Jennifer Marshall; Greely, Henry T.; Grigoriev, Igor V.; Hackett, Kevin J.; Hall, Neil; Haussler, David; Helgen, Kristofer M.; Hogg, Carolyn J.; Isobe, Sachiko; Jakobsen, Kjetill Sigurd; Janke, Axel; Jarvis, Erich D.; Johnson, Warren E.; Jones, Steven J.M.; Karlsson, Elinor K.; Kersey, Paul J.; Kim, Jin-Hyoung; Kress, W. John; Kuraku, Shigehiro; Lawniczak, Mara K.N.; Leebens-Mack, James H.; Li, Xueyan; Lindblad-Toh, Kerstin; Liu, Xin; Lopez, Jose V.; Marques-Bonet, Tomas; Mazard, Sophie; Mazet, Jonna A.K.; Mazzoni, Camila J.; Myers, Eugene W.; O’Neill, Rachel J.; Paez, Sadye; Park, Hyun; Robinson, Gene E.; Roquet, Cristina; Ryder, Oliver A.; Sabir, Jamal S.M.; Shaffer, H. Bradley; Shank, Timothy M.; Sherkow, Jacob S.; Soltis, Pamela S.; Tang, Boping; Tedersoo, Leho; Uliano-Silva, Marcela; Wang, Kun; Wei, Xiaofeng; Wetzer, Regina; Wilson, Julia L.; Xu, Xun; Yang, Huanming; Yoder, Anne D.; Zhang, GuojiePROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 119(4), e2115635118
2352022MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequencesMatthieu Leray; Nancy Knowlton; Ryuji J Machida Environmental DNA 4(4), 894-907
2362022Integrative species delimitation reveals fine-scale allopatric speciation in a good-flying insect: a case study on Cylindera pseudocylindriformis complex (Coleoptera, Cicindelidae)Chou, Ming-Hsun; Chu, I-Hsuan; Lau, Daniel; Huang, Jen-Pan Invertebrate Systematics 36(10), 910-925
2372022Development of transcriptomics-based growth rate indices in two model eukaryotes and relevance to metatranscriptomics datasetsWye-Lup Kong; Ryuji J. Machida Molecular Ecology Resources 22(7), 2627-2639
2382021What is for dessert? Crown-of-thorns starfish feeds on non-scleractinian anthozoans at Taiping Island (Itu Aba), Spratlys, South China SeaKuo, Chao-Yang; Ho, Ming-Jay ; Heng, Wei Khang; Huang, Ya-Yi; Ko, Chia-Ying; Jiang, Guo-Chen; Jeng, Ming-Shiou ; Chen, Chaolun Allen Marine Biodiversity 52, 2
2392021Variation in global distribution, population structures, and demographic history for four Trichiurus cutlassfishesLin, Hsiu-Chin; Tsai, Chia-Jung; Wang, Hui-Yu PeerJ 9, e12639
2402021Cytological Study of Begonia Sect. Diploclinium (Begoniaceae)Yoshiko Kono; Ching-I Peng ; Kazuo Oginuma; Hsun-An Yang; Yan Liu; Chung, Kuo-Fang CYTOLOGIA 86(4), 359-366
2412021Introduction to the special issue on new advances on stratigraphy and paleontology in TaiwanLin, Jih-Pai; Lin, Chien-Hsiang ; Chu, Wei-Chia; Chang, Chun-HsiangTERRESTRIAL ATMOSPHERIC AND OCEANIC SCIENCES 32, 1047-1050
2422021First record of Late Miocene Dendrophyllia de Blainville, 1830 (Scleractinia: Dendrophylliidae) in TaiwanRibas-Deulofeu, Lauriane; Wang, Yen-Chun; Lin, Chien-Hsiang TERRESTRIAL ATMOSPHERIC AND OCEANIC SCIENCES 32, 1061-1068
2432021Estimating allometric energy allocation between somatic and gonadic growthShimadzu, Hideyasu; Wang, Hui-Yu Methods in Ecology and Evolution 13(2), 407-418
2442021Improving Aqueous Solubility of Natural Antioxidant Mangiferin through Glycosylation by Maltogenic Amylase from Parageobacillus galactosidasius DSM 18751Wu, JY; Ding, HY; Wang, TY ; Tsai, YL; Ting, HJ; Chang, TSAntioxidants 10(11), 1817
2452021運用水下聲景訊息感測淺海棲地之空間變化趨勢林子皓 ; 周宜鞍; 孫翊仁
2462021Distinct species hidden in the widely distributed coral Coelastrea aspera (Cnidaria, Anthozoa, Scleractinia)Yuta Mitsuki; Naoko Isomura; Yoko Nozawa ; Hiroyuki Tachikawa; Danwei Huang; Hironobu FukamiINVERTEBRATE SYSTEMATICS 35(8), 876-891
2472021Transcriptome profiling reveals the developmental regulation of NaCl-treated Forcipomyia taiwana eggsChen, M-E; Tsai, M-H; Huang, H-T; Tsai, C-C; Chen, M-J; Yang, D-S; Wang, J ; Huang, R-NBMC GENOMICS 22, 792
2482021Effects of artificial light at night on the nest-site selection, reproductive success and behavior of a synanthropic birdJ-S Wang; M-N Tuanmu ; C-M Hung Environmental Pollution 288, 117805
2492021Histology and transcriptomic analyses of barnacles with different base materials and habitats shed lights on the duplication and chemical diversification of barnacle cement proteinsLin, H.-C.; Y. H. Wong; C.-H. Sung; B. K. K. Chan BMC Genomics 22, 783
2502021A molecular census of early-life stage scleractinian corals in shallow and mesophotic zonesDerek Soto; Stéphane De Palmas; Ming-Jay Ho ; Vianney Denis; Chaolun Allen Chen Ecology and Evolution 11(21), 14573-14584
2512021Production of New Isoflavone Diglucosides from Glycosylation of 8-Hydroxydaidzein by Deinococcus geothermalis AmylosucraseChiang, CM; Wang, TY ; Wu, JY; Zhang, YR; Lin, SY; Chang, TSFermentation 7(4), 232
2522021Enzymatic Synthesis of Novel Vitexin GlucosidesWu, JY; Wang, TY ; Ding, HY; Zhang, YR; Lin, SY; Chang, TSMolecules 26(20), 6274
2532021Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic islandStéphane de Palmas; Derek Soto; Ming-Jay Ho ; Vianney Denis; Chaolun Allen Chen PLOS ONE 16(10), e0258181
2542021Complete Genome Sequence of the Soil-Isolated Psychrobacillus sp. Strain AK 1817, Capable of Biotransforming the Ergostane Triterpenoid Antcin KGómez-Luciano, LB; Wu, YW; Chiang, CM; Chang, TS; Wu, JY; Wang, TY Microbiology Resource Announcements 10(40), e01242-20
2552021Independent and adaptive evolution of phenotypic novelties driven by coral symbiosis in barnacle larvaeDreyer, N.; P.‐C. Tsai; J. Olesen; G. A. Kolbasov; J. T. Høeg; B. K. K. Chan Evolution 76(1), 139-157
2562021Five hundred million years to mobility: directed locomotion and its ecological function in a turtle barnacleChan, B. K. K. ; Y. H. Wong; N. J. Robinson; J.-C. Lin; S.-P. Yu; N. Dreyer; I-J. Cheng; J. T. Høeg; J. D. ZardusProceedings of the Royal Society B: Biological Sciences 288(1960), 20211620
2572021Using metatranscriptomics to estimate the diversity and composition of zooplankton communitiesLopez, MLD; Lin, Y; Sato, M; Hsieh, CH; Shiah, FK ; Machida, RJ MOLECULAR ECOLOGY RESOURCES 22(2), 638-652
2582021Scleractinian diversity in the upper mesophotic zone of Ludao (Taiwan): a museum collection with new records from Taiwanese watersDe Palmas, Stéphane; Denis, Vianney; Soto, Derek; Lin, Yuting Vicky; Ho, Ming-Jay ; Chen, Chaolun Allen Marine Biodiversity 51, 80
2592021Glycosylation of Ganoderic Acid G by Bacillus GlycosyltransferasesWu, JY; Ding, HY; Wang, TY ; Zhang, YR; Chang, TSInternational Journal of Molecular Sciences 22(18), 9744
2602021Antagonistic effects of long- and short-term environmental variation on species coexistenceMing Liu; Dustin R. Rubenstein; Siew Ann Cheong; Sheng-Feng Shen PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 288(1958), 20211491
2612021Why Are Barnacles Common on Intertidal Rocks but Rare in Rock Pools? Effect of Water Temperature, Salinity, and Continuous Submergence on Barnacle Survival in Indian Ocean Rock PoolsBuasakaew, N.; B. K. K. Chan ; K. WangkulangkulFrontiers in Marine Science 8, 688894
2622021A New Species of the Intertidal Limpet Eoacmaea (Patellogastropoda: Eoacmaeidae) from Yonaguni Island, Japan and TaiwanNakano, T.; T. Sasaki; T. Kosuge; B. K. K. Chan ZOOLOGICAL STUDIES 60, 68
2632021Dynamics of methane in mangrove forest: will it worsen with decreasing mangrove forests?Arai, H.; Inubushi, K.; Chiu, C.Y. Forests 12(9), 1204
2642021Latitudinal variation in growth and survival of juvenile corals in the West and South PacificYoko Nozawa ; Ronald D Villanueva; Munasik Munasik; Kakaskasen Andreas Roeroe; Takuma Mezaki; Takashi Kawai; James Guest; Seiji Arakaki; Go Suzuki; Jean JB Tanangonan; Put O Ang; Peter J EdmundsCORAL REEFS 40, 1463-1471
2652021Portraying Gradients of Structural Complexity in Coral Reefs Using Fine-Scale Depth ProfilesLauriane Ribas-Deulofeu; Pierre-Alexandre Château; Vianney Denis; Chaolun Allen Chen Frontiers in Marine Science 8, 675853
2662021Reassessing Banana Phylogeny and Organelle Inheritance Modes Using Genome Skimming DataChung-Shien Wu; Edi Sudianto; Hui-Lung Chiu; Chih-Ping Chao; Shu-Miaw Chaw Frontiers in Plant Science 12, 713216
2672021Moonrise timing is key for synchronized spawning in coral Dipsastraea speciosaChe-Hung Lin; Shunichi Takahashi; Aziz J Mulla; Yoko Nozawa PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 118(34), e2101985118
2682021Baseline soundscapes of deep-sea habitats reveal heterogeneity among ecosystems and sensitivity to anthropogenic impactsChong Chen; Tzu-Hao Lin ; Hiromi Kayama Watanabe; Tomonari Akamatsu; Shinsuke KawagucciLimnology and Oceanography 66(10), 3714-3727
2692021Bat diversity in Cat Ba Biosphere Reserve, Northeastern Vietnam: A review with new records from mangrove ecosystemThong, VD; Denzinger, A; Sang, NV; Huyen, NTT; Thanh, HT; Loi, DN; Nha, PV; Viet, NV; Tien, PD; Tuanmu, M-N ; Huang, JC-C; Thongphachanh, L; Luong, NT; Schnitzler, H-UDiversity 13(8), 376
2702021Characterization of the complete mitochondrial genome of Abscondita cerata (Olivier, 1911) (Coleoptera: Lampyridae) and its phylogenetic implicationsWang, LJ; Wu, YW; Wang, TY Mitochondrial DNA Part B-Resources 6(9), 2528-2530
2712021Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)Lauriane Ribas-Deulofeu; Vianney Denis; Pierre-Alexandre Château; Chaolun Allen Chen​ PEERJ 9, e11744
2722021Acoustic diversity and divergence among shallow-water and upper-mesophotic coral reefsTzu-Hao Lin ; Tomonari Akamatsu; Frederic Sinniger; Saki Harii
2732021太平島棘冠海星大爆發造成珊瑚礁生態大浩劫鄭明修 大自然 第143期,頁58-65
2742021Photo-movement of coral larvae influences vertical positioning in the oceanAziz J Mulla; Che-Hung Lin; Shunichi Takahashi; Yoko Nozawa CORAL REEFS 40, 1297-1306
2752021Could listening underwater sounds reveal the dynamics of chemosynthetic ecosystems?Tzu-Hao Lin ; Chong Chen; Hiromi Kayama Watanabe; Shinsuke Kawagucci; Yung-Che Tseng
2762021Integrated multi-omics investigations reveal the key role of synergistic microbial networks in removing plasticizer di-(2-ethylhexyl) phthalate from estuarine sedimentsSean Ting-Shyang Wei; Yi-Lung Chen; Yu-Wei Wu; Tien-Yu Wu; Yi-Li Lai; Po-Hsiang Wang; Wael Ismail; Tzong-Huei Lee; Yin-Ru Chiang MSYSTEMS 6, e00358-21
2772021Diversity of Indian Barnacles in Marine Provinces and Ecoregions of the Indian OceanTrivedi, J.; Patel, K.; Chan, B.K. K. ; Doshi, M.; Padate, V.Frontiers in Marine Science 8, 657651
2782021Genomic insights into the sessile life and biofouling of barnacles (Crustacea: Cirripedia)Ip, J. C.-H.; Qiu, J.-W.; Chan, B.K.K. Heliyon 7(6), e07291
2792021A New Species of Waginella (Crustacea: Thecostraca: Ascothoracida) Parasitic on a Stalked Crinoid From Tasman Sea, With Notes on Morphology of Related GeneraKolbasov, G. A.; Savchenko, A. S.; Newman, W. A.; Chan, B. K. K. Frontiers in Marine Science 8, 616001
2802021Cytological Study of Begonia Sect. Baryandra (Begoniaceae)Yoshiko Kono; Ching-I Peng; Kazuo Oginuma; Rosario R. Rubite; Yu-Hsin Tseng; Hsun-An Yang; Kuo-Fang Chung CYTOLOGIA 86(2), 133-141
2812021離岸風電對台灣海洋生態環境的影響評估鄭明修 
2822021One-Pot Bi-Enzymatic Cascade Synthesis of Novel Ganoderma Triterpenoid SaponinsChang, TS; Chiang, CM; Wang, TY ; Tsai, YL; Wu, YW; Ting, HJ; Wu, JYCatalysts 11(5), 580
2832021Ecosystem engineering structures facilitate ecological resilience: A coral reef modelPY Cheung; Y Nozawa ; T MikiECOLOGICAL RESEARCH 36(4), 673-685
2842021Vibrio nitrifigilis sp. nov., a marine nitrogen-fixing bacterium isolated from the lagoon sediment of an islet inside an atollWei-Sheng Huang; Li-Ting Wang; Jwo-Sheng Chen; Yen-Ting Chen; Sean Ting-Shyang Wei; Yin-Ru Chiang ; Pei-Ling Wang; Tzong-Huei Lee; Shih-Ting Lin; Lina Huang; Wung Yang ShiehANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 114, 933-945
2852021Cultivation of Caenorhabditis elegans on new cheap monoxenic media without peptoneLe, TS; Nguyen, TTH; Huong, BTM; Nguyen, HG; Ha, BH; Nguyen, VS; Nguyen, MH; Nguyen, H-H; Wang, J JOURNAL OF NEMATOLOGY 53, e2021-36
2862021Phylogeography of Mytilisepta virgata (Mytilidae: Bivalvia) in the northwestern Pacific: Cryptic mitochondrial lineages and mito-nuclear discordanceLee, Y.; G. Ni; J. Shin; T. Kim; E. M. A. Kern; Y. Kim; S. C. Kim; B. K. K. Chan ; R. Goto; T. Nakano; J.-K. ParkMolecular Phylogenetics and Evolution 157, 107037
2872021A tail’s tale: Biomechanical roles of dorsal thoracic spine of barnacle naupliiBranam, E. N.; J. Y. Wong; B. K. K. Chan ; K. Y. K. ChanIntegrative and Comparative Biology icab036
2882021DNA-based diversity assessment reveals a new coral barnacle, Cantellius alveoporae sp. nov. (Balanomorpha: Pyrgomatidae) exclusively associated with the high latitude coral Alveopora japonica in the waters of southern KoreaKim, H. K.; B. K. K. Chan ; S. J. Song; J. S. KhimPeerJ 9, e11284
2892021Population genomic, climatic and anthropogenic evidence suggest the role of human forces in endangerment of green peafowl (Pavo muticus)Dong, F.; Kuo, H.-C.; Chen, G.-L.; Wu, F.; Shan, P.-F.; Wang, J.; Chen, D.; Lei, F.-M.; Hung, C.-M. ; Liu, Y.; Yang, X.-J.PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 288(1948), 20210073
2902021Mechanistic and phylogenetic insights into actinobacteria-mediated oestrogen biodegradation in urban estuarine sedimentsTsun-Hsien Hsiao; Yi-Lung Chen; Menghsiao Meng; Meng-Rong Chuang; Masae Horinouchi; Toshiaki Hayashi; Po-Hsiang Wang; Yin-Ru Chiang MICROBIAL BIOTECHNOLOGY 14(3), 1212-1227
2912021On the evolution of social ties as an instrumental tool for resource competition in resource patch networksChester Wai-Jen Liu; Sheng-Feng Shen ; Wei-Chung Liu Humanities and Social Sciences Communications 8, 78
2922021Diversity of intertidal, epibiotic, and fouling barnacles (Cirripedia, Thoracica) from Gujarat, northwest IndiaTrivedi, J. N.; M. Doshi; K. J. Patel; B. K. K. Chan ZOOKEYS 1026, 143-178
2932021The mitochondrial genome of hydrothermal vent barnacle Eochionelasmus coreana (Cirripedia: Thoracica) from the Indian OceanLee, W.-K.; B. K. K. Chan ; S.-J. Ju; D. S. Kim; S.-J. KimMitochondrial DNA Part B 6(3), 710-712
2942021Genetic Differentiation and Demographic Trajectory of the Insular Formosan and Orii’s Flying FoxesKung-Ping Lin; Shu-Miaw Chaw ; Yun-Hua Lo; Teruo Kinjo; Chien-Yi Tung; Hsi-Chi Cheng; Quintin Lau; Yoko Satta; Masako Izawa; Shiang-Fan Chen; Wen-Ya KoJournal of Heredity 112(2), 192-203
2952021Sensing ecosystem dynamics via audio source separation: A case study of marine soundscapes off northeastern TaiwanTzu-Hao Lin ; Tomonari Akamatsu; Yu TsaoPLOS COMPUTATIONAL BIOLOGY 17(2), e1008698
2962021To the light side: molecular diversity and morphology of stomatopod larvae and juveniles (Crustacea: Malacostraca: Stomatopoda) from crustose coralline algal reefs in TaiwanKJH Wong; YF Tsao; PC Tsai; WP Hsieh; HR Li; RJ Machida ; BKK Chan Marine Biodiversity 51, 20
2972021Soil bacterial communities at the treeline in subtropical alpine areasLin, Yu-Te; Whitman, William B.; Coleman, David C.; Jien, Shih-Hao; Wang, Hsueh-Ching; Chiu, Chih-Yu Catena 201, 105205
2982021The evolutionary diversity of barnacles, with an updated classification of fossil and living formsChan, B. K. K. ; Dreyer, N.; Gale, A. S.; Glenner, H.; Ewers-Saucedo, C.; Pérez-Losada, M.; Kolbasov, G. A.; Crandall, K. A.; Høeg, J. T.Zoological Journal of the Linnean Society, zlaa160
2992021Biotransformation of celastrol to a novel, well-soluble, low-toxic and anti-oxidative celastrol-29-O-β-glucoside by Bacillus glycosyltransferasesChang, TS; Wang, TY ; Chiang, CM; Lin, YJ; Chen, HL; Wu, YW; Ting, HJ; Wu, JYJournal of Bioscience and Bioengineering 131(2), 176-182
3002021Naupliar development of Facetotecta (Crustacea: Thecostraca) and the nature of the first nauplius instar in the Crustacea - pro et contra the Hexanauplia conceptKolbasov, G. A.; A. S. Petrunina; N. Dreyer; A. A. Prudkovsky; Olesen J.; B. K. K. Chan ; J. T. HøegOrganisms Diversity & Evolution 21, 209-230
3012021The Origins of the Austronesians: Papers from 2019 International Austronesian Language Revitalization ForumKuo-Fang Chung New Taipei City
3022021南島起源:2019年南島語言復振國際論壇實錄鍾國芳 新北市
3032021An Indo-Pacific coral spawning databaseAndrew H Baird; James R Guest; Alasdair J Edwards; Andrew G Bauman; Jessica Bouwmeester; Hanaka Mera; David Abrego; Mariana Alvarez-Noriega; Russel C Babcock; Miguel B Barbosa; Victor Bonito; John Burt; Patrick C Cabaitan; Ching-Fong Chang; Suchana Chavanich; Chaolun A Chen; Chieh-Jhen Chen; Wei-Jen Chen; Fung-Chen Chung; Sean R Connolly; Vivian R Cumbo; Maria Dornelas; Christopher Doropoulos; Gal Eyal; Lee Eyal-Shaham; Nur Fadli; Joana Figueiredo; Jean-François Flot; Sze-Hoon Gan; Elizabeth Gomez; Erin M Graham; Mila Grinblat; Nataly Gutiérrez-Isaza; Saki Harii; Peter L Harrison; Masayuki Hatta; Nina Ann Jin Ho; Gaetan Hoarau; Mia Hoogenboom; Emily J Howells; Akira Iguchi; Naoko Isomura; Emmeline A Jamodiong; Suppakarn Jandang; Jude Keyse; Seiya Kitanobo; Narinratana Kongjandtre; Chao-Yang Kuo; Charlon Ligson; Che-Hung Lin; Jeffrey Low; Yossi Loya; Elizaldy A Maboloc; Joshua S Madin; Takuma Mezaki; Choo Min; Masaya Morita; Aurelie Moya; Su-Hwei Neo; Matthew R Nitschke; Satoshi Nojima; Yoko Nozawa ; Srisakul Piromvaragorn; Sakanan Plathong; Eneour Puill-Stephan; Kate Quigley; Catalina Ramirez-Portilla; Gerard Ricardo; Kazuhiko Sakai; Eugenia Sampayo; Tom Shlesinger; Leony Sikim; Chris Simpson; Carrie A Sims; Frederic Sinniger; Davies A Spiji; Tracy Tabalanza; Chung-Hong Tan; Tullia I Terraneo; Gergely Torda; James True; Karenne Tun; Kareen Vicentuan; Voranop Viyakarn; Zarinah Waheed; Selina Ward; Bette Willis; Rachael M Woods; Erika S Woolsey; Hiromi H Yamamoto; Syafyudin YusufSCIENTIFIC DATA 8, 35
3042021Tight Association of Genome Rearrangements With Gene Expression in Conifer PlastomesWu, Chung-Shien; Sudianto, Edi; Chaw, Shu-Miaw BMC Plant Biology 21, 33
3052021A new deep-sea hot vent stalked barnacle from the Mariana Trough with notes on the feeding ecology of VulcanolepasWatanabe, H. K.; C. Chen; B. K. K. Chan Marine Biodiversity 51(1), 9
3062021The gut retention time of microplastics in barnacle naupliar larvae from different climatic zones and marine habitatsYu, S.-P.; M. Nakaoka; B. K. K. Chan Environmental Pollution 268, 115865
3072021Potential Himalayan community turnover through the Late PleistoceneDong, F.; Hung, C.-M. ; Li, S.H.; Yang, X.-J.CLIMATIC CHANGE 164, 6
3082021New insights into the patterns and drivers of avian altitudinal migration from a growing crowdsourcing data sourceTsai, P-Y; Ko, C-J; Chia, SY; Lu, Y-J; Tuanmu, M-N Ecography 44(1), 75-86
3092021Exploring coral reef biodiversity via underwater soundscapesTzu-Hao Lin ; Tomonari Akamatsu; Frederic Sinniger; Saki HariiBIOLOGICAL CONSERVATION 253, 108901
3102021The rectal mucosal but not fecal microbiota detects subclinical ulcerative colitisLin, Yu-Fei; Sung, Chang Mu; Ke, Huei-Mien; Kuo, Chia-Jung; Liu, Wei-an; Tsai, Wen-Sy; Lin, Cheng-Yu; Cheng, Hao-Tsai; Lu, Meiyeh J ; Tsai, Isheng J.; Hsieh, Sen-YungGut Microbes 13(1), 1832856
3112021Prognostic Genetic Biomarkers Based on Oncogenic Signaling Pathways for Outcome Prediction in Patients with Oral Cavity Squamous Cell CarcinomaFan, Wen-Lang; Yang, Lan-Yan; Hsieh, Jason Chia-Hsun; Lin, Tsung-Chieh; Lu, Mei-Yeh Jade ; Liao, Chun-TaCancers 13(11), 2709
3122021Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green RevolutionPanibe, Jerome P.; Wang, Long; Li, Jengyi; Li, Meng-Yun; Lee, Yi-Chen; Wang, Chang-Sheng; Ku, Maurice S.B.; Lu, Mei-Yeh Jade ; Li, Wen-HsiungGenomics 113(4), 2656-2674
3132021Quantifying Coral Reef Resilience to Climate Change and Human Development: An Evaluation of Multiple Empirical FrameworksAshley H Y Bang; Chao-Yang Kuo; Colin Kuo-Chang Wen; Khah-Leng Cherh; Ming-Jay Ho ; Nien-Yun Cheng; Yen-Chia Chen; Chaolun Allen Chen Frontiers in Marine Science 7, 610306
3142021Biogeographic Changes in Forest Soil Microbial Communities of Offshore Islands—A Case Study of Remote Islands in TaiwanChang, Ed-Haun; Tsai, Isheng Jason ; Jien, Shih-Hao; Tian, Guanglong; Chiu, Chih-Yu Forests 12(1), 4
3152021Composition and Activity of N2-Fixing Microorganisms in Mangrove Forest SoilsShiau, Yo-Jin; Lin, Yu-Te; Yam, Rita S. W.; Chang, Ed-Haun; Wu, Jhe-Ming; Hsu, Tsu-Hsuan; Chiu, Chih-Yu Forests 12(7), 822
3162021Functional response of the soil microbial community to biochar applicationsXu, Wenhuan; Whitman, William B.; Gundale, Michael J.; Chien, Chuan‐Chi; Chiu, Chih‐Yu GCB Bioenergy 13(1), 269-281
3172021Influence of thermal stratification on seasonal net ecosystem production and dissolved inorganic carbon in a shallow subtropical lakeLin, H.C.; Chiu, C.Y. ; Tsai, J.W.; Liu, W.C.; Tada, K.; Nakayama, K.Journal of Geophysical Research-Biogeosciences 126(4), e2020JG005907
3182021Evolution of adult male horn developmental phenotypes and character displacement in Xylotrupes beetles (Scarabaeidae)Huang, Jen-Pan ; Morgan, BrettEcology and Evolution 11(10), 5503-5510
3192021Begonia ×dinglensis, a natural hybrid of Philippine Begonia section Baryandra, as evidenced by morphological, phylogenetic and cytological dataKoh Nakamura; Rosario Rivera Rubite; Yoshiko Kono; Jelene V. Macabsco; Arlene D. Talana; Grecebio J. D. Alejandro; Meng-Jung Ho; Hsun-An Yang; Kuo-Fang Chung ; Ching-I PengPhytotaxa 494(1), 151-164
3202021The Widened Pipe Model of plant hydraulic evolutionLoren Koçillari; Mark E. Olson; Samir Suweis; Rodrigo P. Rocha; Alberto Lovison; Franco Cardin; Todd E. Dawson; Alberto Echeverría; Alex Fajardo; Silvia Lechthaler; Cecilia Martínez-Pérez; Carmen Regina Marcati; Kuo-Fang Chung ; Julieta A. Rosell; Alí Segovia-Rivas; Cameron B. Williams; Emilio Petrone-Mendoza; Andrea Rinaldo; Tommaso Anfodillo; Jayanth R. Banavar; Amos MaritanPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 118(22), e2100314118
3212021Using RADseq to understand the circum‐Antarctic distribution of a lichenized fungus, Pseudocyphellaria glabraWidhelm, Todd J.; Grewe, Felix; Huang, Jen-Pan ; Ramanauskas, Karolis; Mason-Gamer, Roberta; Lumbsch, H. ThorstenJournal of Biogeography 48(1), 78-90
3222021Isolation by geographical distance after release from Pleistocene refugia explains genetic and phenotypic variation in Xylotrupes siamensis (Coleoptera: Scarabaeidae)Morgan, Brett; Huang, Jen-Pan Zoological Journal of the Linnean Society 192(1), 117-129
3232021The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor Erythroxylum gracilipesWhite, Dawson M; Huang, Jen-Pan ; Jara-Muñoz, Orlando Adolfo; MadriñáN, Santiago; Ree, Richard H; Mason-Gamer, Roberta JSystematic Biology 70(1), 1-13
3242021Assessing the rectal mucosal microbiota improves mild ulcerative colitis detection sensitivity and evaluationYF Lin; CM Sung; HM Ke; WA Liu; HY Huang; MJ Lu; IJ Tsai ; SY Hsiehgut microbes
3252021Comparative analysis of zooplankton diversities and compositions estimated from complement DNA and genomic DNA amplicons, metatranscriptomics, and morphological identificationsMachida, RJ ; Kurihara, H; Nakajima, R; Sakamaki, T; Lin, YY; Furusawa, KICES Journal of Marine Science 78(9), 3428-3443
3262021Fossil fish otoliths from the Chibanian Miyata Formation, Kanagawa Prefecture, Japan, with comments on the paleoenvironmentMitsui, Shota; Taru, Hajime; Ohe, Fumio; Lin, Chien-Hsiang ; Strüssmann, C.A.GEOBIOS 64, 47-63
3272021Adventures of a Mathematician in Evolutionary BiologyLi, WH Genome Biology and Evolution 13(3), evab012
3282021Population differentiation of Rhodobacteraceae along with coral compartmentsLuo, Danli; Wang, Xiaojun; Feng, Xiaoyuan; Tian, Mengdan; Wang, Sishuo; Tang, Sen-Lin ; Ang, Put; Yan, Aixin; Luo, HaiweiThe ISME Journal 15, 3286-3302
3292021Spatial and cross-seasonal patterns of coral diseases in reefs of Taiwan: high prevalence and regional variationChing-Yun Huang; Jiang-Shiou Hwang; Hideyuki Yamashiro; Sen-Lin Tang Diseases of Aquatic Organisms 146, 145-156
3302021Phylogeography of blue corals (genus Heliopora) across the Indo-West PacificHiroki Taninaka; Davide Maggioni; Davide Seveso; Danwei Huang; Abram Townsend; Zoe T. Richards; Sen-Lin Tang ; Naohisa Wada; Taisei Kikuchi; Hideaki Yuasa; Megumi Kanai; Stéphane De Palmas; Niphon Phongsuwan; Nina YasudaFrontiers in Marine Science 8, 714662
3312021Understanding and using fungal bioluminescence – recent progress and future perspectivesHM Ke; IJ Tsai Current Opinion in Green and Sustainable Chemistry _, 100570
3322021Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root FungiLiao, Hui-Ling; Bonito, Gregory; Hameed, Khalid; Wu, Steven H.; Chen, Ko-Hsuan ; Labbé, Jesse; Schadt, Christopher W.; Tuskan, Gerald A.; Martin, Francis; Kuo, Alan; Barry, Kerrie; Grigoriev, Igor V.; Vilgalys, RytasFrontiers in Microbiology 12, 3555
3332021The impacts of the hydraulic retention effect and typhoon disturbance on the carbon flux in shallow subtropical mountain lakesLin, Hao-Chi; Tsai, Jeng-Wei; Tada, Kazufumi; Matsumoto, Hiroki; Chiu, Chih-Yu ; Nakayama, KeisukeScience of The Total Environment 803, 150044
3342021Tryptophan plays an important role in yeast's tolerance to isobutanolLiu, HL; Wang, CH; Chiang, EI; Huang, CC; Li, WH Biotechnology for biofuels 14, 200
3352021Social interactions upregulate hemolymph tryptophan and tyrosine levels in the male lobster cockroachHsieh, Hsiang-Wen; Chen, Shu-Chun; Huang, Wan-Chen ; Fang, Shu ; Yang, En-Cheng; Hsu, Chu-Chun; Kou, RongHormones and Behavior 130, 104935
3362021A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-BarcodingChen, Ko-Hsuan ; Longley, Reid; Bonito, Gregory; Liao, Hui-LingAgronomy 11(7), 1274
3372021Age and growth of Palaeoloxodon huaihoensis from Penghu Channel, Taiwan: significance of their age distribution based on fossilsKang, Jia-Cih; Lin, Chien-Hsiang ; Chang, Chun-HsiangPEERJ 9, e11236
3382021Late Miocene otoliths from northern Taiwan: insights into the rarely known Neogene coastal fish community of the subtropical northwest PacificLin, Chien-Hsiang ; Chien, Chi-WeiHistorical Biology 34(2), 361-382
3392021Potential syntrophic relationship between coral-associated Prosthecochloris and its companion sulfate-reducing bacterium unveiled by genomic analysisChen, Yu-Hsiang; Yang, Shan-Hua; Tandon, Kshitij; Lu, Chih-Ying; Chen, Hsing-Ju; Shih, Chao-Jen; Tang, Sen-Lin Microbial Genomics 7(5), 000574
3402021Genome Sequence of Hardyhisp2, a Gammapleolipovirus Infecting Haloarcula hispanicaDyall-Smith, Mike; Pfeiffer, Friedhelm; Chiang, Pei-Wen; Tang, Sen-Lin Microbiology Resource Announcements 10(19), e00226-21
3412021Whole-Genome Sequence Resource of Calonectria ilicicola, the Casual Pathogen of Soybean Red Crown RotLiu, Hsien-Hao; Wang, Jie; Wu, Ping-Hu; Lu, Mei-Yeh Jade ; Li, Jeng-Yi; Shen, Yuan-Min; Tzeng, Min-Nan; Kuo, Chang-Hsin; Lin, Ying-Hong; Chang, Hao-XunMolecular Plant-Microbe Interactions® 34(7), 848-851
3422021Incipient speciation and its impact on taxonomic decision: a case study using a sky island sister-species pair of stag beetles (Lucanidae: Lucanus)Chou, Ming-Hsun; Tseng, Wei-Zhe; Sang, Yao-De; Morgan, Brett; De Vivo, Mattia; Kuan, Yi-Hsiu; Wang, Liang-Jong; Chen, Wei-Yun; Huang, Jen-Pan Biological Journal of the Linnean Society 134(3), 745-759
3432021New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approachesBucklin, A; Peijnenburg, KTCA; Kosobokova, K; Machida, RJ ICES Journal of Marine Science 78(9), 3281-3287
3442021First detection of Colletotrichum fructicola (Ascomycota) on horsehair worms (Nematomorpha)De Vivo, Mattia; Wang, Wen-Hong; Chen, Ko-Hsuan ; Huang, Jen-Pan Biodiversity Data Journal 9, e72798
3452021Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral‐killing sponge, Terpios hoshinotaChen, Yu-Hsiang; Chen, Hsing-Ju; Yang, Cheng-Yu; Shiu, Jia-Ho; Hoh, Daphne Z.; Chiang, Pei-Wen; Chow, Wenhua Savanna; Chen, Chaolun Allen ; Shih, Tin-Han; Lin, Szu-Hsien; Yang, Chi-Ming ; Reimer, James Davis; Hirose, Euichi; Iskandar, Budhi Hascaryo; Huang, Hui; Schupp, Peter J.; Tan, Chun Hong James; Yamashiro, Hideyuki; Liao, Ming-Hui; Tang, Sen-Lin Environmental Microbiology 24(3), 1308-1325
3462021The Novel Halovirus Hardycor1, and the Presence of Active (Induced) Proviruses in Four HaloarchaeaDyall-Smith, Mike; Pfeiffer, Friedhelm; Chiang, Pei-Wen; Tang, Sen-Lin Genes 12(2), 149
3472021Bacterial Dynamics in the Accessory Nidamental Gland of Sepioteuthis lessoniana throughout MaturationShan-Hua Yang; Chi Chen; Yunli Eric Hsieh; Sung-Yin Yang; Hau-Wen Li; Tzu-Yun Ching; Chia-Hui Wang; Ching-Fong Chang; Sen-Lin Tang ; Guan-Chung WuMicrobes and environments 36(4), ME21030
3482021Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approachChen, Yu-Hsiang; Chiang, Pei-Wen; Rogozin, Denis Yu; Degermendzhy, Andrey G.; Chiu, Hsiu-Hui; Tang, Sen-Lin Communications Biology 4, 996
3492021A Large Spatial Survey of Colistin-Resistant Gene mcr-1-Carrying E. coli in Rivers across TaiwanTeng, Ching-Hao; Wu, Pin-Chieh; Tang, Sen-Lin ; Chen, Yi-Chen; Cheng, Ming-Fang; Huang, Ping-Chih; Ko, Wen-Chien; Wang, Jiun-LingMicroorganisms 9(4), 722
3502021Detection of Pathogenic and Beneficial Microbes for Roselle Wilt DiseaseWang, Chih-Wei; Yu, Yu-Hsiang; Wu, Chun-Yao; Feng, Ru-Ying; Tandon, Kshitij; Chen, Ying-Lien; Tang, Sen-Lin Frontiers in Microbiology 12, 756100
3512021Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, SiberiaWu, Yu-Ting; Chiang, Pei-Wen; Tandon, Kshitij; Rogozin, Denis Yu; Degermendzhy, Andrey G.; Tang, Sen-Lin Microbial Genomics 7(12), 000712
3522021The Genealogical Divergence Index Across a Speciation Continuum in Hercules BeetlesHuang, Jen-Pan Insect Systematics and Diversity 5(6), 1
3532021Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandraHuang, Chi-Fa; Liu, Wen-Yu; Lu, Mei-Yeh Jade ; Chen, Yi-Hua; Ku, Maurice S, B; Li, Wen-Hsiung Molecular Biology and Evolution 38(11), 4715-4731
3542021Monthly progression rates of the coral-killing sponge Terpios hoshinota in Sesoko Island, Okinawa, JapanAini, Siti N.; Tang, Sen-Lin ; Yamashiro, HideyukiCoral Reefs 40, 973-981
3552021Aquatic microbial community is partially functionally redundant: Insights from an in situ reciprocal transplant experimentTandon, Kshitij; Wan, Min-Tao; Yang, Chia-Chin; Yang, Shan-Hua; Baatar, Bayanmunkh; Chiu, Chih-Yu ; Tsai, Jeng-Wei; Liu, Wen-Cheng; Ng, Chen Siang; Tang, Sen-Lin Science of The Total Environment 786, 147433
3562020Molecular asymmetry in the cephalochordate embryo revealed by single-blastomere transcriptome profilingLin, C.Y.; Lu, M.Y.J. ; Yue, J.X.; Li, K.L.; Le Petillon, Y.; Yong, L.W.; Chen, Y.H.; Tsai, F.Y.; Lyu, Y.F.; Chen, C.Y.; Hwang, S.P.L. ; Su, Y.H. ; Yu, J.K. PLOS GENETICS 16(12), e1009294
3572020聆聽海洋-從白海豚棲地聲景尋找海洋保育的契機林子皓 海洋漫波(海洋保育季刊) 第六期,頁21-25
3582020Sea urchins play an increasingly important role for coral resilience across reefs in TaiwanViet Do Hung Dang; Pak-Yin Cheung; Chia-Ling Fong; Aziz J Mulla; Jia-Ho Shiu; Che-Hung Lin; Yoko Nozawa Frontiers in Marine Science 7, 581945
3592020Fishing pressure occurs down to the lower mesophotic coral ecosystem in Lyudao, TaiwanMing-Jay Ho ; Chao-Yang Kuo; Hung-Yi Wu; Ming-Shiou Jeng ; Shiahn-Wern Shyue; Chaolun Allen Chen Galaxea, Journal of Coral Reef Studies 22(1), 29-30
3602020Mycena genomes resolve the evolution of fungal bioluminescenceKe, Huei-Mien; Lee, Hsin-Han; Lin, Chan-Yi Ivy; Liu, Yu-Ching; Lu, Min R.; Hsieh, Jo-Wei Allison; Chang, Chiung-Chih; Wu, Pei-Hsuan; Lu, Meiyeh Jade ; Li, Jeng-Yi; Shang, Gaus; Lu, Rita Jui-Hsien; Nagy, László G.; Chen, Pao-Yang ; Kao, Hsiao-Wei; Tsai, Isheng Jason Proceedings of the National Academy of Sciences 117(49), 31267-31277
3612020Soundscape Viewer: An integrated toolbox of audio source separation for soundscape-based ecosystem assessmentYi-Jen Sun; Tzu-Hao Lin 
3622020Assessing diversity of animal vocalizations via unsupervised machine learningTzu-Hao Lin ; Yi-Jen Sun; Anita Weng; Tzu-Yan Hsu; Li Lin; Ching-Wei Wang
3632020Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associationsYang, H. C. ; Chen, C. H. ; Wang, J. H.; Liao, H. C.; Yang, C. T.; Chen, C. W.; Lin, Y. C.; Kao, C. H.; Lu, M. Y. J. ; Liao, J. C.Proceedings of the National Academy of Sciences of the United States of America 117(48), 30679-30686
3642020Effects of ocean acidification on coral endolithic bacterial communities in Isopora palifera and Porites lobataSung-Yin Yang; Chih-Ying Lu; Sen-Lin Tang ; Rocktim Ramen Das; Kazuhiko Sakai; Hideyuki Yamashiro; Shan-Hua YangFrontiers in Marine Science 7, 603293
3652020Intergenerational microplastics impact the intertidal barnacle Amphibalanus amphitrite during the planktonic larval and benthic adult stagesYu, S.-P.; B. K. K. Chan Environmental Pollution 267, 115560
3662020Cytological Study of Begonia Sect. Coelocentrum (Begoniaceae)Yoshiko Kono; Ching-I Peng; Kazuo Oginuma; Yan Liu; Wei-Bin Xu; Hsun-An Yang; Kuo-Fang Chung CYTOLOGIA 85(4), 333-340
3672020Genome plasticity in Paramecium bursaria revealed by population genomicsYH Cheng; CFJ Liu; YH Yu; YT Jhou; M Fujishima; IJ Tsai ; JY LeuBMC BIOLOGY 18, 180
3682020Correction: Keshavmurthy, S., et al. Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan). Journal of Marine Science and Engineering 2019, 7, 338Shashank Keshavmurthy; Chao-Yang Kuo; Ya-Yi Huang; Rodrigo Carballo-Bolaños; Pei-Jei Meng; Jih-Terng Wang; Chaolun Allen Chen Journal of Marine Science and Engineering 8(12), 964
3692020Genome skimming and exploration of DNA barcodes for Taiwan endemic cypressesWu, Chung-Shien; Sudianto, Edi; Hung, Yu-Mei; Wang, Bo-Cyun; Huang, Chiun-Jr; Chen, Chi-Tsong; Chaw, Shu-Miaw SCIENTIFIC REPORTS 10, 20650
3702020How plant DNA tells story of Austronesian expansion and migrationKuo-Fang Chung 南島誌 Ora Nui 4, 188-197
3712020Reply to Locatelli et al.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts’ effort in each groupLeray, M; Knowlton, N; Ho, SL; Nguyen, BN; Machida, RJ PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(51), 32213-32214
3722020Grazing effects of sea urchin Diadema savignyi on algal abundance and coral recruitment processesViet Do Hung Dang; Chia-Ling Fong; Jia-Ho Shiu; Yoko Nozawa SCIENTIFIC REPORTS 10, 20346
3732020Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discoveryWu, Wei-Kai; Panyod, Suraphan; Liu, Po-Yu; Chen, Chieh-Chang; Kao, Hsien-Li; Chuang, Hsiao-Li; Chen, Ying-Hsien; Zou, Hsin-Bai; Kuo, Han-Chun; Kuo, Ching-Hua; Liao, Ben-Yang; Chiu, Tina H. T.; Chung, Ching-Hu; Lin, Angela Yu-Chen; Lee, Yi-Chia; Tang, Sen-Lin ; Wang, Jin-Town; Wu, Yu-Wei; Hsu, Cheng-Chih; Sheen, Lee-Yan; Orekhov, Alexander N.; Wu, Ming-ShiangMicrobiome 8(1), 162
3742020Physiological plasticity of corals to temperature stress in marginal coral communitiesShashank Keshavmurthy; Morgan Beals; Hernyi Justin Hsieh; Kwang-Sik Choi; Chaolun Allen Chen Science of The Total Environment 758, 143628
3752020Coastal development threatens Datan area supporting greatest fish diversity at Taoyuan Algal Reef, northwestern TaiwanJoseph Heard; Wei-chen Tung; Yu-de Pei; Tzu-Hao Lin ; Chien-Hsiang Lin ; Tomonari Akamatsu; Colin KC WenAQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS 31(3), 590-604
3762020Avian phenotypic convergence is subject to low genetic constraints based on genomic evidenceChen, Yu-Chi; Kuo, Hao-Chih; Lo, Wen-Sui; Hung, Chih-Ming BMC EVOLUTIONARY BIOLOGY 20, 147
3772020A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity RegimesTandon, Kshitij; Baatar, Bayanmunkh; Chiang, Pei-Wen; Dashdondog, Narangarvuu; Oyuntsetseg, Bolormaa; Tang, Sen-Lin Microorganisms 8(11), 1729
3782020Metagenomic sequencing reveals altered bacterial abundance during coral-sponge interaction: Insights into the invasive process of coral-killing sponge Terpios hoshinotaThinesh, T.; Meenatchi, R.; Lipton, Anuj Nishanth; Anandham, Rangasamy; Jose, Polpass Arul; Tang, Sen-Lin ; Seghal, Kiran G.; Selvin, JosephMicrobiological Research 240, 126553
3792020Biodiversity and host specificity of sponge-associated barnacles (Cirripedia: Thoracica) in ThailandYu, M.-C.; B. K. K. Chan ; G. A. Kolbasov; M. GanmaneeJOURNAL OF CRUSTACEAN BIOLOGY 40(6), 839-865
3802020A new species of sponge-inhabiting barnacle Neoacasta (Archaeobalanidae, Acastinae) in Kyushu, JapanYu, M.-C.; T. Yorisue; G. A. Kolbasov; B. K. K. Chan Crustaceana 93(11-12), 1515-1532
3812020Biogeography of intertidal and subtidal native and invasive barnacles in Korea in relation to oceanographic current ecoregions and global climatic changesKim, H. K.; B. K. K. Chan ; S.-K. Lee; W. KimJournal of the Marine Biological Association of the United Kingdom 100(7), 1079-1091
3822020Detecting Genetic Ancestry and Adaptation in the Taiwanese Han PeopleLo, Yun-Hua; Cheng, Hsueh-Chien; Hsiung, Chia-Ni; Yang, Show-Ling; Wang, Han-Yu; Peng, Chia-Wei; Chen, Chun-Yu; Lin, Kung-Ping; Kang, Mei-Ling; Chen, Chien-Hsiun; Chu, Hou-Wei; Lin, Chiao-Feng; Lee, Mei-Hsuan; Liu, Quintin; Satta, Yoko; Lin, Cheng-Jui; Lin, Marie; Chaw, Shu-Miaw ; Loo, Jun-Hun; Shen, Chen-Yang ; Ko, Wen-YaMolecular Biology and Evolution, msaa276
3832020Locality Effect of Coral-Associated Bacterial Community in the Kuroshio Current From Taiwan to JapanYang, Shan-Hua; Tseng, Ching-Hung; Lo, Hsueh-Ping; Chiang, Pei-Wen; Chen, Hsing-Ju; Shiu, Jia-Ho; Lai, Hung-Chun; Tandon, Kshitij; Isomura, Naoko; Mezaki, Takuma; Yamamoto, Hiromi; Tang, Sen-Lin Frontiers in Ecology and Evolution 8, 569107
3842020Seabed mining could come at a high price for a unique faunaLeray, M; Machida, RJ MOLECULAR ECOLOGY 29(23), 4506-4509
3852020Global distribution and cleanup opportunities for macro ocean litter: a quarter century of accumulation dynamics under windage effectsKo, Chia-Ying; Hsin, Yi-Chia ; Jeng, Ming-Shiou Environmental Research Letters 15(10), 104063
3862020A global analysis of complexity–biodiversity relationships on marine artificial structuresStrain, E. M. A.; P. D. Steinberg; M. Vozzo; E. L. Johnston; M. Abbiati; M. A. Aguilera; L. Airoldi; J. D. Aguirre; G. Ashton; M. Bernardi; P. Brooks; B. K. K. Chan ; C. B. Cheah; S. Y. Chee; R. Coutinho; T. Crowe; A. Davey; L. B. Firth; C. Fraser; M. E. Hanley; S. J. Hawkins; K. E. Knick; E. T. C. Lau; K. M. Y. Leung; C. McKenzie; C. Macleod; S. Mafanya; F. P. Mancuso; L.V. R. Messano; L. P. D. Naval‐Xavier; T. P. T. Ng; K. A. O'Shaughnessy; P. Pattrick; M. J. Perkins; S. Perkol‐Finkel; Porri F. Porri; D. J. Ross; G. Ruiz; I. Sella; R. Seitz; R. Shirazi; M. Thiel; R. C. Thompson; J. C. Yee; C. Zabin; M. J. BishopGlobal Ecology and Biogeography 30(1), 140-153
3872020Swimming kinematics and hydrodynamics of barnacle larvae throughout developmentWong, J. Y.; B. K. K. Chan ; K. Y. K. ChanProceedings of the Royal Society B: Biological Sciences 287(1936), 20201360
3882020The diversity and biology of symbiotic and parasitic crustaceans: an introductionDreyer, N.; B. K. K. Chan Journal of Crustacean Biology 40(6), 761-764
3892020Establishment of three human induced pluripotent stem cell lines from a type 1 diabetic family harboring sequence variants associated with autoimmunityE.P.F. Chu; C.H. Lin; C.H.H. Cho; I.F. Cheng; T.C. Kuo R.Y. Chen; C.N. Liao; J.C. Cheng; J.I.S. Tsai ; P.C. Wang; S.J. Chang; C.N. Shen Stem Cell Research 49, 102029
3902020Spatiotemporal Changes in the Bacterial Community of the Meromictic Lake Uchum, SiberiaChan, Ya-Fan; Chiang, Pei-Wen; Tandon, Kshitij; Rogozin, Denis; Degermendzhi, Andrey; Zykov, Vladimir; Tang, Sen-Lin Microbial Ecology 81, 357-369
3912020How do whale barnacles live on their hosts? Functional morphology and mating-group sizes of Coronula diadema (Linnaeus, 1767) and Conchoderma auritum (Linnaeus, 1767) (Cirripedia: Thoracicalcarea)Kim, H. K.; B. K. K. Chan ; C.-B. Kang; H. W. Kim; W. KimJournal of Crustacean Biology 40(6), 808-824
3922020Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nestsChen, Cheng-Yu; Chen, Chih-Kuan; Chen, Yi-Ying; Fang, Andrew; Shaw, Grace Tzun-Wen; Hung, Chih-Ming ; Wang, Daryi Microbiome 8, 129
3932020Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growthLiu, WY; Lin, HH; Yu, CP; Chang, CK; Chen, HJ; Lin, JJ; Lu, MY ; Tu, SL; Shiu, SH; Wu, SH ; Ku, MSB; Li, WH PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(35), 21747-21756
3942020台灣生物多樣性資訊整合與開放端木茂甯 ; 鍾國芳 ; 劉璟儀科學發展 第573期,頁34-38
3952020台灣的冷凍方舟計畫黃世彬; 邵廣昭 ; 鍾國芳 ; 吳聲華科學發展 第573期,頁23-27
3962020台灣有多少物種李宜軒; 端木茂甯 ; 鍾國芳 科學發展 第573期,頁23-2718-22
3972020Long-term warming destabilizes aquatic ecosystems through weakening biodiversity-mediated causal networksChun-Wei Chang; Hao Ye; Takeshi Miki; Ethan R Deyle; Souissi Sami; Orlane Anneville; Rita Adrian; Yin-Ru Chiang ; Satoshi Ichise; Michio Kumagai; Shin-Ichiro S Matsuzaki; Fuh-Kwo Shiah; Jiunn-Tzong Wu; Chih-Hao Hsieh; George SugiharaGLOBAL CHANGE BIOLOGY 26(11), 6413-6423
3982020台灣淺堆抽砂的危機鄭明修 
3992020Spatial heterogeneity of coral reef benthic communities in KenyaJuliet Furaha Karisa; David Obare Obura; Chaolun Allen Chen PLOS ONE 15(8), e0237397
4002020Listening forward: Approaching marine biodiversity assessments using acoustic methodsT. Aran Mooney; Lucia Di Iorio; Marc Lammers; Tzu-Hao Lin ; Sophie Nedelec; Miles Parsons; Craig Radford; Ed Urban; Jenni StanleyROYAL SOCIETY OPEN SCIENCE 7(8), 201287
4012020A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-PacificWada, Naohisa; Yuasa, Hideaki; Kajitani, Rei; Gotoh, Yasuhiro; Ogura, Yoshitoshi; Yoshimura, Dai; Toyoda, Atsushi; Tang, Sen-Lin ; Higashimura, Yukio; Sweatman, Hugh; Forsman, Zac; Bronstein, Omri; Eyal, Gal; Thongtham, Nalinee; Itoh, Takehiko; Hayashi, Tetsuya; Yasuda, NinaMICROBIOME 8, 123
4022020The release of “sperm bundles” by Acropora coralsChe-Hun Lin; Yoko Nozawa BULLETIN OF MARINE SCIENCE 97(1), 105-106
4032020IMPARO: inferring microbial interactions through parameter optimisationVidanaarachchi, Rajith; Shaw, Marnie; Tang, Sen-Lin ; Halgamuge, SamanBMC Molecular and Cell Biology 21, 34
4042020Characterizing habitat-specific soundscapes in deep-sea benthic ecosystemsTzu-Hao Lin ; Chong Chen; Hiromi Kayama Watanabe; Shinsuke Kawagucci; Tetsuya Miwa; Hiroyuki Yamamoto; Shinji Tsuchida; Yoshihiro Fujiwara
4052020Blind monaural source separation on heart and lung sounds based on periodic-coded deep autoencoderKun-Hsi Tsai; Wei-Chien Wang; Chui-Hsuan Cheng; Chan-Yen Tsai; Jou-Kou Wang; Tzu-Hao Lin ; Shih-Hau Fang; Li-Chin Chen; Yu Tsao IEEE Journal of Biomedical and Health Informatics 24(11), 3203-3214
4062020Improvements in soil C and N compositions after 40 and 80 years of reforestation in subtropical low mountain forestsShiau, Y.J.; Chang, E.H.; Tian, G.; Chen, T.H.; Chiu, C.Y. Journal of Geophysical Research-Biogeosciences 125(9), e2019JG005598
4072020Niche differentiation of active methane-oxidizing bacteria in estuarine mangrove forest soils in TaiwanShiau, Y.J.; Lin, C.W.; Cai, Y.; Jia, Z.; Lin, Y.T.; Chiu, C.Y. Microorganisms 8(8), 1248
4082020Trans-Pacific genetic differentiation in the deep-water stalked barnacle Scalpellum stearnsii (Cirripedia: Thoracica: Scalpellidae)Lin, H.-C.; C.-C. Cheang; L. Cobari; B. K. K. Chan Deep Sea Research Part I: Oceanographic Research Papers 164, 103359
4092020Life histories determine divergent population trends for fishes under climate warmingWang, Hui-Yu ; Shen, Sheng-Feng ; Chen, Ying-Shiuan; Kiang, Yun-Kae; Heino, MikkoNATURE COMMUNICATIONS 11, 4088
4102020台灣淺堆的大量抽砂造成生態浩劫鄭明修 大自然 第142期,頁35-36
4112020東沙環礁生態在極端氣候下的調適與管理策略鄭明修 大自然, 第142期,頁8-15
4122020被政府忽視的觀塘港最佳替代方案鄭明修 大自然 第142期,頁52-61
4132020太平島不太平靜 - 南海主權風雲再起與其珊瑚礁的保育策略鄭明修 漫步生態秘徑:探索生物多樣性的奧妙 (台北 : 中央研究院)
4142020Shifting in the Dominant Bacterial Group Endozoicomonas Is Independent of the Dissociation With Coral Symbiont AlgaeShiu, Jia-Ho; Yu, Sheng-Ping; Fong, Chia-Ling; Ding, Jiun-Yan; Tan, Chih-Jui; Fan, Tung-Yung; Lu, Chih-Ying; Tang, Sen-Lin Frontiers in Microbiology 11, 1791
4152020Spatial Variation in Thermal Stress Experienced by Barnacles on Rocky Shores: The Interplay Between Geographic Variation, Tidal Cycles and Microhabitat TemperaturesWang, Hui-Yu ; Tsang, Ling Ming; Lima, Fernando P.; Seabra, Rui; Ganmanee, Monthon; Williams, Gray A.; Chan, Benny K. K. Frontiers in Marine Science 7, 553
4162020Six new species of Begonia from Guangxi, ChinaYan Liu; Yu-Hsin Tseng; Hsun-An Yang; Ai-Qun Hu; Wei-Bin Xu; Che-Wei Lin; Yoshiko Kono; Chiung-Chih Chang; Ching-I Peng; Kuo-Fang Chung BOTANICAL STUDIES 61, 21
4172020Potential of galled leaves of Goji (Lycium chinense) as functional foodPo-Yen Chen; Tin-Han Shih; Kai-Chieh Chang; Jhin-Syuan Wang; Chi-Ming Yang ; Yu-Sen ChangBMC Nutrition 6, 26
4182020Photosynthesis-related proteins of cup-shaped galls in Litsea acuminata leavesTin-Han Shih; Kuan-Hung Lin; Yu-Jie Chen; Szu-Hsien Lin; Chi-Ming Yang TAIWANIA 65(3), 407-412
4192020Population Genetic and Social Structure Survey of Solenopsis geminata in ThailandNipitwattanaphon, N; Swatdipong, A; Hasin, S; Wang, J ZOOLOGICAL STUDIES 59, 22
4202020Ectomycorrhizal Plant-Fungal Co-invasions as Natural Experiments for Connecting Plant and Fungal Traits to Their Ecosystem ConsequencesHoeksema, Jason D.; Averill, Colin; Bhatnagar, Jennifer M.; Brzostek, Edward; Buscardo, Erika; Chen, Ko-Hsuan ; Liao, Hui-Ling; Nagy, Laszlo; Policelli, Nahuel; Ridgeway, Joanna; Rojas, J. Alejandro; Vilgalys, RytasFrontiers in Forests and Global Change 3, 84
4212020BIOGEOGRAPHY AND HOST USAGE OF CORAL-ASSOCIATED CRUSTACEANS: BARNACLES, COPEPODS, AND GALL CRABS AS MODEL ORGANISMSChan, B. K. K. ; K. J. H. Wong; Y. R. ChengThe Natural History of the Crustacea Evolution and Biogeography of the Crustacea, Volume 8 (United Kingdom : Oxford University Press)
4222020Demographic census confirms a stable population of the critically-endangered caryophyllid coral Polycyathus chaishanensis (Scleractinia; Caryophyllidae) in the Datan Algal Reef, TaiwanChao-Yang Kuo; Shashank Keshavmurthy; Aichi Chung; Ya-Yi Huang; Sung-Yin Yang; Yei-Chia Chen; Chaolun Allen Chen SCIENTIFIC REPORTS 10, 10585
4232020Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens.Vu, Trieu-Duc; Iwasaki, Yuki; Shigenobu, Shuji; Maruko, Akiko; Oshima, Kenshiro; Iioka, Erica; Huang, Chao-Li; Abe, Takashi; Tamaki, Satoshi; Lin, Yi-Wen; Chen, Chih-Kuan; Lu, Mei-Yeh ; Hojo, Masaru; Wang, Hao-Ven; Tzeng, Shun-Fen; Huang, Hao-Jen; Kanai, Akio; Gojobori, Takashi; Chiang, Tzen-Yuh; Sun, H. Sunny; Li, Wen-Hsiung ; Okada, NorihiroPLoS Genetics 16(6), e1008831
4242020Latitudinal difference in the species richness of photosymbiotic ascidians along the east coast of TaiwanEuichi Hirose; Yoko Nozawa ZOOLOGICAL STUDIES 59, 19
4252020中央研究院植物標本館的過去、現在與未來鍾國芳 ; 劉翠雅
4262020Highly oxygenated constituents from a marine alga-derived fungus Aspergillus giganteus NTU967Jih-Jung Chen; Shih-Wei Wang; Yin-Ru Chiang ; Ka-Lai Pang; Yueh-Hsiung Kuo; Tsai-Yen Shih; Tzong-Huei LeeMARINE DRUGS 18(6), 303
4272020Living in a growing host: growth pattern and dwelling formation of the scallop Pedum spondyloideum in massive Porites spp. CoralsChan, B. K. K. ; J. C. H. Tan; M. GanmaneeMarine Biology 167, 95
4282020How whale and dolphin barnacles attach to their hosts and the paradox of remarkably versatile attachment structures in cypris larvaeDreyer, N.; J. D. Zardus; J. T. Høeg; J. Olesen; M.-C. Yu; B. K. K. Chan Organisms Diversity & Evolution 20, 233-249
4292020First discovery of the sessile barnacle Eochionelasmus (Cirripedia: Balanomorpha) from a hydrothermal vent field in the Indian OceanChan, B. K. K. ; S.-J. Ju; D.-S. Kim; S.-J. KimJournal of the Marine Biological Association of the United Kingdom 100(4), 585-593
4302020Disentangling reticulate evolution of North Temperate Haplostemonous Ludwigia (Onagraceae)Shih-Hui Liu; Hsun-An Yang; Yoshiko Kono; Peter C. Hoch; Janet C. Barber; Ching-I Peng; Kuo-Fang Chung ANNALS OF THE MISSOURI BOTANICAL GARDEN 105(2), 163-182
4312020The origin and underlying driving forces of the SARS-CoV-2 outbreakChaw, SM ; Tai, JH; Chen, SL; Hsieh, CH; Chang, SY; Yeh, SH; Yang, WS; Chen, PJ; Wang, HYJournal of biomedical science 27, 73
4322020The origin and evolution of plastid genome downsizing in Southern Hemispheric cypresses (Cupressaceae)Sudianto, E; Wu, CS; Chaw, SM Frontiers in Plant Science 11, 901
4332020Transcription analysis of chlorophyll biosynthesis in wildtype and chlorophyll b-lacking rice (Oryza sativa L.)Khiem Minh Nguyen; Tin-Han Shih; Szu-Hsien Lin; Wen-Dar Huang; Chi-Ming Yang PHOTOSYNTHETICA 58(3), 702-711
4342020即刻救援台灣淺堆的生態浩劫鄭明修 國際海洋資訊雙月刊 第6期,頁6-8
4352020Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signalingKun-Yang Lin; Wen-Der Wang; Chi-Hung Lin; Elham Rastegari; Yu-Han Su; Yu-Tzu Chang; Yung-Feng Liao ; Yi-Chieh Chang; Haiwei Pi; Bo-Yi Yu; Shu-Hwa Chen; Chung-Yen Lin ; Mei-Yeh Lu ; Tsu-Yi Su; Fei-Yang Tzou; Chih-Chiang Chan; Hwei-Jan Hsu Nature Communications 11, 3147
4362020Urgent Mitigation of the Ecological Disaster on Formosa BankJeng, M.S. International Ocean Information(國際海洋資訊雙月刊) 6, 31-34
4372020A new species of Sessilogoga Grygier, 1990 parasitic in an antipatharian from Green Island, Taiwan, with notes on its nauplius larvae and the synapomorphies and apparent gonochorism of the genus (Crustacea: Thecostraca: Ascothoracida)Gregory A. Kolbasov; Alexandra S. Petrunina; Jørgen Olesen; Ming-Jay Ho ; Benny K. K. Chan ; Mark J. GrygierMarine Biodiversity 50, 43
4382020Sea urchins (diadematids) promote coral recovery via recruitment on Taiwanese reefsNozawa, Y ; Lin, C; Meng, PCORAL REEFS 39, 1199-1207
4392020Idea Paper: Tracking the distribution of accretive reef communities across the Kuroshio regionV Denis; TY Fan; WV Hsiao; SJ Hwang; YV Lin; Y Nozawa ECOLOGICAL RESEARCH 35(4), 595-598
4402020Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleachingYa-Yi Huang; Rodrigo Carballo-Bolaños; Chao-Yang Kuo; Shashank Keshavmurthy; Chaolun A. Chen SCIENTIFIC REPORTS 10, 7808
4412020Specificity trumps flexibility—location-based stable associations between Symbiodiniaceae genera and Platygyra verweyi (Scleractinia; Merulinidae)Shashank Keshavmurthy​; Hwee Sze Tee​; Kuo-Wei Kao; Jih-Terng Wang​; Chaolun Allen Chen​ PEER J 8, e8791
4422020Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effectsLe, MH; Wang, D Scientific reports 10, 7547
4432020Sponge symbiosis is facilitated by adaptive evolution of larval sensory and attachment structures in barnaclesYu, M.-C.; N. Dreyer; G. A. Kolbasov; J. T. Høeg; B. K. K. Chan PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 287(1927), 20200300
4442020Assessing impacts of metallic contamination along the tidal gradient of a riverine mangrove: multi-metal bioaccumulation and biomagnification of filter-feeding bivalvesYam, R.S.W.; Fan, Y.T.; Tan, Z.; Wang, T.D.; Chiu, C.Y. Forests 11(5), 504
4452020Constructing a human complex type N-linked glycosylation pathway in Kluyveromyces marxianusMing-Hsuan Lee; Tsui-Ling Hsu ; Jinn-Jy Lin; Yu-Ju Lin; Yi-Ying Kao; Jui-Jen Chang; Wen-Hsiung Li PloS one 15(5), e0233492
4462020Repeated Colonization Between Arid and Seasonal Wet Habitats, Frequent Transition Among Substrate Preferences, and Chemical Diversity in Western Australian Xanthoparmelia LichensAutumn, Kendra; Barcenas-Peña, Alejandrina; Kish-Levine, Samantha; Huang, Jen-Pan ; Lumbsch, H. ThorstenFrontiers in Ecology and Evolution 8, 129
4472020A trait dataset for Taiwan’s breeding birdsTsai, P-Y; Ko, C-J; Hsieh, C; Su, Y-T; Lu, Y-J; Lin; R-S; Tuanmu, M-N Biodiversity Data Journal 8, e49735
4482020Ecological transitions in grouping benefits explain the paradox of environmental quality and sociality.Liu, M.; S.-F. Chan; D. R. Rubenstein; S.-J. Sun; B.-F. Chen; S.-F Shen The American Naturalist 195(5), 818-832
4492020Terrestrial loads of dissolved organic matter drive inter-annual carbon flux in subtropical lakes during times of droughtChiu, C.Y. ; Jones, J.R.; Rusak, J.A.; Lin, H.C; Nakayama, K.; Kratz, T.K.; Liu, W.C.; Tang, S.L. ; Tsai, J.W.Science of the Total Environment 717, 137052
4502020Effects of polystyrene microplastics on larval development, settlement, and metamorphosis of the intertidal barnacle Amphibalanus amphitriteYu, S.-P.; B. K. K. Chan Ecotoxicology and Environmental Safety 194, 110362
4512020Comparative Genomics of Two New HF1-like HalovirusesDyall-Smith, Mike; Tang, Sen-Lin ; Russ, Brendan; Chiang, Pei-Wen; Pfeiffer, FriedhelmGenes 11(4), 405
4522020A stranger among us: the occurrence of Cantellius (Balnoidea: Pyrgomatidae) an epibiont of scleractinias in stylasterids (Hydrozoa)Zweifler, A.; N. Simon-Blecher; D. Pica; B. K. K. Chan ; J. Roth; Y. AchituvZoological Journal of the Linnean Society 190(4), 1077-1094
4532020Evolution of feeding shapes swimming kinematics of barnacle naupliar larvae: a comparison between trophic modesWong, J. Y.; B. K. K. Chan ; K. Y. K. ChanIntegrative Organismal Biology 2(1), obaa011
4542020Biogeochemical processes of C and N in the soil of mangrove forest ecosystemsShiau, Y.J.; Chiu, C.Y. Forests 11(5), 492
4552020In memoriam Ching-I Peng (1950–2018)—an outstanding scientist and mentor with a remarkable legacyKuo-Fang Chung Botanical Studies 61, e14
4562020Insights into gene regulation of the halovirus His2 infecting Haloarcula hispanicaLee, Sonny T. M.; Ding, Jiun‐Yan; Chiang, Pei‐Wen; Dyall‐Smith, Mike; Tang, Sen‐Lin MicrobiologyOpen 9(5), e1016
4572020七美淺海珊瑚及硨磲貝生態資源調查(澎湖縣政府農漁局委託計畫)鄭明修 七美淺海珊瑚及硨磲貝生態資源調查, 121
4582020望安周邊海域珊瑚及硨磲貝生態資源調查(澎湖縣政府農漁局委託計畫)鄭明修 望安周邊海域珊瑚及硨磲貝生態資源調查, 129
4592020Mutagenesis Mediated by CRISPR/Cas9 in the Red Imported Fire Ant, Solenopsis invictaChiu, Y-K; Hsu, J-C; Chang, T; Huang, Y-C; Wang, J INSECTES SOCIAUX 67, 317-326
4602020Locally-adapted Reproductive Photoperiodism Determines Population Vulnerability to Climate Change in Burying BeetlesTsai, H-Y; D.R. Rubenstein; Y.-M. Fan; T.-N. Yuan; B.-F. Chen; Y. Tang; I.-C. Chen; S.-F. Shen NATURE COMMUNICATIONS 11(1), 1398
4612020A Chemically triggered Transition from Conflict to Cooperation in Burying BeetlesChen, B.-F.; M. Liu; D. R. Rubenstein; S.-J. Sun; J.-N. Liu; Y.-H. Lin; S.-F. Shen ECOLOGY LETTERS 23(3), 467-475
4622020Interspecific mating behavior between introduced Zacco platypus and native Opsariichthys evolans in TaiwanLiao, NL; Huang, SP; Wang, TY Zoological Studies 59, 6
4632020Comparative genomics: Dominant coral-bacterium Endozoicomonas acroporae metabolizes dimethylsulfoniopropionate (DMSP)Tandon, Kshitij; Chiang, Pei-Wen; Lu, Chih-Ying; Wada, Naohisa; Yang, Shan-Hua; Chan, Ya-Fan; Chen, Ping-Yun; Chang, Hsiao-Yu; Chou, Ming-Shean; Chen, Wen-Ming; Tang, Sen-Lin ISME JOURNAL 14, 1290-1303
4642020Convergent evolution of the vertical transmission mode of the cyanobacterial obligate symbiont Prochloron distributed in the tunic of colonial ascidiansEuichi Hirose; Yoko Nozawa JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH 58(4), 1058-1066
4652020The Origin of the Subtropical Coral Alveopora japonica (Scleractinia: Acroporidae) in High-Latitude EnvironmentsJi Hyoun Kang; Ji Eun Jang; Jae Hwan Kim; Sangil Kim; Shashank Keshavmurthy; Sylvain Agostini; James D. Reimer; Chaolun Allen Chen ; Kwang-Sik Choi; Sang Rul Park; Hyuk Je LeeFRONTIERS IN ECOLOGY AND EVOLUTION 8, 12
4662020Constructing a yeast to express the largest cellulosome complex on the cell surfaceAnandharaj, M; Lin, YJ; Rani, RP; Nadendla, EK; Ho, MC; Huang, CC; Cheng, JF; Chang, JJ; Li, WH Proceedings of the National Academy of Sciences of the United States of America 117(5), 2385-2394
4672020The fire ant social supergene is characterized by extensive gene and transposable element copy number variationFontana, S; Chang, NC; Chang, T; Lee, CC; Dang, VD; Wang, J MOLECULAR ECOLOGY 29(1), 105-120
4682020Parallel concerted evolution of ribosomal protein genes in fungi and its adaptive significanceMullis, A; Lu, Z; Zhan, Y; Wang, TY ; Rodriguez, J; Rajeh, A; Chatrath, A; Lin, ZMolecular Biology and Evolution 37(2), 455-468
4692020Soil is not a reservoir for Phellinus noxius.Wu, ZC; Chang, YY; Lai, QJ; Lin, HA; Tzean, SS; Liou, RF; Tsai, IJ ; Chung, CLPhytopathology 110(2), 362-369
4702020Secondary contact after allopatric divergence explains avian speciation and high species diversity in the Himalayan-Hengduan MountainsFeng Dong; Chih-Ming Hung ; Xiao-Jun YangMOLECULAR PHYLOGENETICS AND EVOLUTION 143, 106671
4712020Remotely-sensed L4 SST underestimates the thermal fingerprint of coastal upwellingMeneghesso, C.; Seabra, R.; Broitman, B. R.; Wethey, D. S.; Burrows, M. T.; Chan, B. K. K. ; Guy-Haim, T.; Ribeiro, P. A.; Rilov, G.; Santos, A. M.; Sousa, L. L.; Lima, F. P.Remote Sensing of Environment 237, 111588
4722020Morphological and molecular evidence support the intertidal barnacle Octomeris intermedia Nilsson-Cantell, 1921 (Thoracica, Chthamalidae) as a valid species in Indo-Pacific watersChan, B. K. K. ; Y. F. Tsao; M. GanmaneeZooKeys 914, 1-31
4732020Changes in reproduction for subtropical cutlassfish Trichiurus japonicus reflect variation in temperature and population demographyChen, Ying-Shiuan; Jeng, Zhi-Yu; Wang, Hui-Yu Marine Ecology 41(1), e12578
4742020Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylationPo-Hsiang Wang; Yi-Lung Chen; Sean Ting-Shyang Wei; Kan Wu; Tzong-Huei Lee; Tien-Yu Wu; Yin-Ru Chiang PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(3), 1395-1403
4752020南海珊瑚礁生態資源的變遷與永續鄭明修 
4762020Biosynthesis of ascorbic acid as a glucose-induced photoprotective process in the extremophilic red alga Galdieria partita.Han-Yi Fu; Shao-Lun Liu; Yin-Ru Chiang Frontiers in Microbiology 10, 3005
4772020サンゴ礁における鳴音を用いた生物分布観測とサウンドスケープの季節変化赤松友成; Tzu-Hao Lin ; 波利井佐紀; Frederic Sinniger超音波Techno 32(1) (超音波テクノ 2020年1-2月号), 19-22
4782020在爭議中尋求永續發展─離岸風電生態評估再進化林子皓 ; 柯智仁科學月刊 第601期,頁16-19
4792020Sympatric competitors have driven the evolution of temporal activity patterns in Cnemaspis geckos in Southeast AsiaNguyen, H. N.; Hung, C. M. ; Yang, M. Y.; Lin, S. M.SCIENTIFIC REPORTS 10, 27
4802020Genome-scale data reveal the role of hybridization in lichen-forming fungiKeuler, Rachel; Garretson, Alexis; Saunders, Theresa; Erickson, Robert J.; St. Andre, Nathan; Grewe, Felix; Smith, Hayden; Lumbsch, H. Thorsten; Huang, Jen-Pan ; St. Clair, Larry L.; Leavitt, Steven D.Scientific Reports 10(1), 1497
4812020Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta: Orthoptera)Huang, Jen-Pan ; Hill, JoVonn G.; Ortego, Joaquín; Knowles, L. LaceySystematic Entomology Early View
4822020Methanolobus halotolerans sp. nov., isolated from the saline Lake Tus in SiberiaShen, Ya; Chen, Sheng-Chung; Lai, Mei-Chin; Huang, Hsing-Hua; Chiu, Hsiu-Hui; Tang, Sen-Lin ; Rogozin, Denis Yu; Degermendzhy, Andrey G.International Journal of Systematic and Evolutionary Microbiology 70(10), 5586-5593
4832020A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain modelBrandon-Mong, Guo-Jie; Shaw, Grace Tzun-Wen; Chen, Wei-Hsin; Chen, Chien-Chang ; Wang, Daryi BMC Microbiology 20, 295
4842020Antagonistic effects of intraspecific cooperation and interspecific competition on thermal performanceTsai, H.-Y.; D.R. Rubenstein; B.-F. Chen; M. Liu; S.-F. Chan; D.-P. Chen; S.-J. Sun; T.-N. Yuan; S.-F. Shen ELIFE 9, e57022
4852020Social rank modulates how environmental quality influences cooperation and conflict within animal societiesLiu, Mark; Chen, Bo-Fei; Rubenstein, Dustin R.; Shen, Sheng-Feng Proceedings of the Royal Society B: Biological Sciences 287(1935), 20201720
4862020Is population subdivision different from speciation? From phylogeography to species delimitationHuang, Jen‐Pan Ecology and Evolution 10(14), 6890-6896
4872020Macroevolutionary integration of phenotypes within and across ant worker castesFriedman, Nicholas R.; Lecroq Bennet, Beatrice; Fischer, Georg; Sarnat, Eli M.; Huang, Jen‐Pan ; Knowles, L. Lacey Knowles; Economo, Evan P.Ecology and Evolution 10(17), 9371-9383
4882020Nearly Complete Genome Assembly of the Pinewood Nematode Bursaphelenchus xylophilus Strain Ka4C1M Dayi; S Sun; Y Maeda; R Tanaka; A Yoshida; IJ Tsai ; T KikuchiMicrobiology Resource Announcements 9(42), e01002-20
4892020Nest microbiota and pathogen abundance in sea turtle hatcheriesHoh, Daphne Z.; Lin, Yu-Fei; Liu, Wei-An; Sidique, Siti Nordahliawate Mohamed; Tsai, Isheng Jason Fungal Ecology 47, 100964
4902020Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stagesLu, MR; Lai, CK; Liao, BY; Tsai, IJ Genome biology and evolution 12(7), 1019-1030
4912020Socially Parasitic Ants Evolve a Mosaic of Host-Matching and Parasitic Morphological TraitsFischer, Georg; Friedman, Nicholas R.; Huang, Jen-Pan ; Narula, Nitish; Knowles, L. Lacey; Fisher, Brian L.; Mikheyev, Alexander S.; Economo, Evan P.Current Biology 30(18), 3639-3646.e4
4922020澎湖南方四島國家公園海域長期生態監測與保育策略鄭明修 ; 戴昌鳳國家公園學報 第30卷第1期,頁28-41
4932020Feeding habits of bigeye tuna (Thunnus obesus) in the western Indian Ocean reveal a size-related shift in its fine-scale piscivorous dietLin, Chien-Hsiang ; Lin, Jing-Siang; Chen, Kuo-Shu; Chen, Meng-Hsien; Chen, Chiee-Young; Chang, Chih-WeiFrontiers in Marine Science 7, 582571
4942020我能當分類學家嗎?會面臨什麼挑戰?林千翔 科學月刊 第608期,頁50-53
4952020カジノキのDNAはオーストロネシア人の移住と和紙の起源の物語をどのように語っているのか?鍾國芳 ; 張瓊之; 謝佳倫; 國府方吾郎古文書研究 第90号,頁23-34
4962020Chapter 7 Review: Effects of Microplastic on Zooplankton Survival and Sublethal ResponsesYu, S.-P.; M. Cole; B. K. K. Chan Oceanography and Marine Biology (Boca Raton, London, New York : CRC Press)
4972020Genomic Analysis of Mycobacterium tuberculosis Isolates and Construction of a Beijing Lineage Reference GenomeW.-F. Wang; M.-Y. Jade Lu ; T.-J. R. Cheng; Y.-C. Tang; Y.-C. Teng; T.-Y. Hwa; Y.-H. Chen; M.-Y. Li; M.-H. Wu; P.-C. Chuang; R. Jou; C.-H. Wong ; W.-H. Li Genome Biology and Evolution 12(2), 3890-3905
4982020Authentication, phytochemical characterization and anti-bacterial activity of two Artemisia speciesYang, Meng-Ting; Kuo, Tien-Fen; Chung, Kuo-Fang ; Liang, Yu-Chuan; Yang, Chu-Wen; Lin, Chih-Yu; Feng, Ching-Shan; Chen, Zeng-Weng; Lee, Tsung-Han; Hsiao, Chiao-Ling; Yang, Wen-Chin Food Chemistry 333, 127458
4992020Complex signals alter recognition accuracy and conspecific acceptance thresholdsTibbetts, E. A.; M. Liu; E. C. Laub; S.-F. Shen PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 375(1802), 20190482
5002020Historical dynamics of the demersal fish community in the East and South China SeasGao, Jin; Thorson, James T.; Szuwalski, Cody; Wang, Hui-Yu Marine and Freshwater Research 71(9), 1073-1085
5012019Thermal Stress and Resilience of Corals in a Climate-Changing WorldRodrigo Carballo-Bolaños; Derek Soto; Chaolun Allen Chen Journal of Marine Science and Engineering 8(1), 15
5022019Fish fossils of Taiwan: a review and prospectionLin, Chien-Hsiang ; Chien, Chi-Wei; Lee, Shih-Wei; Chang, Chih-WeiHISTORICAL BIOLOGY
5032019Spectral indices to rapidly monitor chloroplast distribution patterns of three cecidomyiid gallsHuang, M. Y.; Lin, K. H.; Shih, T. H.; Chang, Y. T.; Yang, C. M TAIWANIA 64(4), 438-441
5042019Underestimated species diversity and hidden habitat preference in Moina (Crustacea, Cladocera) revealed by integrative taxonomyMakino, W; Machida, RJ ; Okitsu, J; Nisikawa, UHYDROBIOLOGIA 847, 857-878
5052019Two new species of the genus Ophichthus from the western central Pacific Ocean, with a redescription of Ophichthus megalops Asano, 1987 (Anguilliformes: Ophichthidae)Hibino, Y.; Y.C. Chiu; H.M. Chen; K.T. Shao Zootaxa 4702(1), 140-154
5062019Paleontological Studies of Whale Barnacles in Taiwan Reveal New Cetacean Migration Routes in the Western Pacific Since the MioceneBuckeridge, J. S.; B. K. K. Chan ; J.-P. LinZOOLOGICAL STUDIES 58, 39
5072019Response of humic acids and soil organic matter to vegetation replacement in subtropical high mountain forestsWang, H.C.; Tian, G.; Chen, C.P.; Chang, E.H.; Chou, C.Y.; Chiou, C.R.; Chiu, C.Y. Journal of Geophysical Research-Biogeosciences 124(12), 3727-3736
5082019Draft Genome Assembly of a Fouling Barnacle, Amphibalanus amphitrite (Darwin, 1854): The First Reference Genome for ThecostracaKim, J.-H.; Kim, H. K.; Kim, H.; Chan, B. K. K. ; Kang, S.; Kim, W.Frontiers in Ecology and Evolution 7, 465
5092019Taiwan is the ancestral homeland of Pacific paper mulberryKuo-Fang Chung 
5102019The limits of Hyb-Seq for herbarium specimens: Impact of preservation techniquesForrest, Laura L.; Hart, Michelle L.; Hughes, Mark; Wilson, Hannah P.; Chung, Kuo-Fang ; Tseng, Yu-Hsin; Kidner, Catherine A.Frontiers in Ecology and Evolution 7, 439
5112019How paper mulberry DNA tells stories of Austronesian migration and the origin of Japanese paper?Kuo-Fang Chung ; Goro Kokubugata
5122019A new species of the coral associated barnacle (Thoracica: Pyrgomatidae: Pyrgoma) from a deep-sea oculinid coral in New Caledonian waters.Kim, H. K.; Chan, B. K. K. ; Corbari, L; Moreno, P. A. R.; Achituv, Y.; Kim, W.Zootaxa 4695(1), 26-44
5132019First Report of the Association of Myriogenospora atramentosa with the Plant Genus HemarthriaChen, Ko-Hsuan ; Blount, Ann; Justesen, Brittany; Walter, Joseph H.; Wallau, Marcelo; Liao, Hui-LingPlant Health Progress 20(4), 244-246
5142019GenBank is a reliable resource for 21st century biodiversity researchLeray, M; Knowlton, N; Ho, SL; Nguyen, BN; Machida, RJ PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 116 (45), 22651-22656
5152019Comparative genomics of the major parasitic wormsAvril Coghlan; Rahul Tyagi; James A. Cotton; Nancy Holroyd; Bruce A. Rosa; Isheng Jason Tsai ; Dominik R. Laetsch; Robin N. Beech; Tim A. Day; Kymberlie Hallsworth-Pepin; Huei-Mien Ke; Tzu-Hao Kuo; Tracy J. Lee; John Martin; Rick M. Maizels; Prudence Mutowo; Philip Ozersky; John Parkinson; Adam J. Reid; Neil D. Rawlings; Diogo M. Ribeiro; Lakshmipuram Seshadri Swapna; Eleanor Stanley; David W. Taylor; Nicolas J. Wheeler; Mostafa Zamanian; Xu Zhang; Fiona Allan; Judith E. Allen; Kazuhito Asano; Simon A. Babayan; Germanus Bah; Helen Beasley; Hayley M. Bennett; Stewart A. Bisset; Estela Castillo; Joseph Cook; Philip J. Cooper; Teresa Cruz-Bustos; Carmen Cuéllar; Eileen Devaney; Stephen R. Doyle; Mark L. Eberhard; Aidan Emery; Keeseon S. Eom; John S. Gilleard; Daria Gordon; Yvonne Harcus; Bhavana Harsha; John M. Hawdon; Dolores E. Hill; Jane Hodgkinson; Petr Horák; Kevin L. Howe; Thomas Huckvale; Martin Kalbe; Gaganjot Kaur; Taisei Kikuchi; Georgios Koutsovoulos; Sujai Kumar; Andrew R. Leach; Jane Lomax; Benjamin Makepeace; Jacqueline B. Matthews; Antonio Muro; Noel Michael O’Boyle; Peter D. Olson; Antonio Osuna; Felix Partono; Kenneth Pfarr; Gabriel Rinaldi; Pilar Foronda; David Rollinson; Mercedes Gomez Samblas; Hiroshi Sato; Manuela Schnyder; Tomáš Scholz; Myriam Shafie; Vincent N. Tanya; Rafael Toledo; Alan Tracey; Joseph F. Urban; Lian-Chen Wang; Dante Zarlenga; Mark L. Blaxter; Makedonka Mitreva; Matthew BerrimanNature Genetics 51(1), 163-174
5162019Generating brain matrices for zebra finch brain sectioning using three-dimensional printing technologyHuang, C.-C.; Chen, Y.-Y.; Fang, Y.-T.; Chen, Y.-C.; Hung, C.-M. JOURNAL OF NEUROSCIENCE METHODS 327, 108399
5172019Has gene expression neofunctionalization in the fire ant antennae contributed to queen discrimination behavior?Dang, VD; Cohanim, AB; Fontana, S; Privman, E; Wang, J GENOME BIOLOGY AND EVOLUTION 9(22), 12754-12766
5182019Nuclear and mitochondrial ribosomal ratio as an index of animal growth rateKong, WL; Miki, T; Lin, YY; Makino, W; Urabe, J; Gu, SH; Machida, RJ LIMNOLOGY AND OCEANOGRAPHY-METHODS 17(11), 575-584
5192019Microbial degradation of steroid sex hormones: Implications for environmental and ecological studies.Yin-Ru Chiang ; Sean Ting-Shyang Wei; Po-Hsiang Wang; Pei-Hsun Wu; Chang-Ping YuMICROBIAL BIOTECHNOLOGY 13(4), 926-949
5202019A genome-centric approach reveals a novel glycosyltransferase from the GA A07 strain of Bacillus thuringiensis responsible for catalyzing 15-O-Glycosylation of ganoderic acid AChang, TS; Wang, TY ; Hsueh, TY; Lee, YW; Wu, JY; Chiang, CM; Chuang, HM; Cai, WX; Wu, YWInternational Journal of Molecular Sciences 20(20), 5192
5212019台灣海洋國家公園對極端氣候的調適對策鄭明修 
5222019藻礁生態的美麗與哀愁鄭明修 
5232019Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan)Shashank Keshavmurthy; Chao-Yang Kuo; Ya-Yi Huang; Rodrigo Carballo-Bolaños; Pei-Jei Meng; Jih-Terng Wang; Chaolun Allen Chen Journal of Marine Science and Engineering 7(11), 388
5242019Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus.Lee, HH; Ke, HM; Lin, CI; Lee, TJ; Chung, CL; Tsai, IJ Genome biology and evolution 11(10), 2774-2788
5252019Selection and gene flow shape niche-associated variation in pheromone responseLee, D; Zdraljevic, S; Cook, DE; Frézal, L; Hsu, JC; Sterken, MG; Riksen, JAG; Wang, J ; Kammenga, JE; Braendle, C; Félix, MA; Schroeder, FC; Andersen, ECNATURE ECOLOGY & EVOLUTION 3, 1455-1463
5262019A continuum of biological adaptations to environmental fluctuationLiu, M.; D. R. Rubenstein; W.-C. Liu ; S.-F. Shen PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 286(1912), 20191623
5272019Influence of thorny bamboo plantations on soil microbial biomass and community structure in subtropical badland soilsChang, E.H.; Tian, G.; Shiau, Y.J.; Chen, T.H.; Chiu, C.Y. Forests 10(10), 854
5282019Contrasting forms of competition set elevational range limits of speciesChan, S.-F.; W.-K. Shih; A.-Y. Chang; S.-F. Shen ; I.-C. ChenEcology Letters 22(10), 1668-1679
5292019Artificial intelligence reveals environmental constraints on colour diversity in insectsWu, S.; C.-M. Chang; D.R. Rubenstein; C.-M. Yang; Y.-T. Huang; H.-H. Lin; L.-C. Shih; S.-W. Chen; S.-F. Shen NATURE COMMUNICATIONS 10, 4554
5302019Taiwan is the ancestral homeland of Pacific paper mulberryKuo-Fang Chung 
5312019A new triterpenoid glucoside from a novel acidic glycosylation of ganoderic acid A via recombinant glycosyltransferase of Bacillus subtilisChang, TS; Chiang, CM; Kao, YH; Wu, JY; Wu, YW; Wang, TY Molecules 24(19), 3457
5322019Many human RNA viruses show extraordinarily stringent selective constraints on protein evolution.Lin, JJ; Bhattacharjee, MJ; Yu, CP; Tseng, YY; Li, WH Proceedings of the National Academy of Sciences of the United States of America 116(38), 19009-19018
5332019To Trim or Not to Trim: Effects of Read Trimming on the De Novo Genome Assembly of a Widespread East Asian Passerine, the Rufous-Capped Babbler (Cyanoderma ruficeps Blyth)Yang, S.-F.; Lu, C.-W.; Yao, C.-T.; Hung, C.-M. GENES 10(10), 737
5342019Characterizing an engineered carotenoid-producing yeast as an anti-stress chassis for building cell factories.Liu, HL; Chang, JJ; Thia, C; Lin, YJ; Lo, SC; Huang, CC; Li, WH Microbial cell factories 18(1), 155
5352019DNA barcoding of coastal ray-finned fishes in VietnamThu, P. T; W.C. Huang; T-K. Chou; N.V. Quan; P.V. Chien; Fan Li; K.T. Shao ; T-Y. LiaoPLOS ONE 14(9), e0222631
5362019A new species of Synagoga (Crustacea, Thecostraca, Ascothoracida) parasitic in an antipatharian from Green Island, Taiwan, with notes on its morphologyKolbasov, G. A.; Petrunina, A. S.; Ho, M.-J. ; Chan, B. K. K. ZooKeys 876, 55-85
5372019The coral Platygyra verweyi exhibits local adaptation to long-term thermal stress through host-specific physiological and enzymatic responseJih-Terng Wang; Yu-Ting Wang; Shashank Keshavmurthy; Pei-Jei Meng; Chaolun Allen Chen Scientific Reports 9, 13492
5382019全球過漁危機 : 海洋枯竭與永續的關鍵--以過漁為鏡,見臺灣漁業資源困境邵廣昭 豐年/農傳媒 9月號(第69卷9期)
5392019Large-scale identification and functional analysis of NLR genes in blast resistance in the Tetep rice genome sequence.Wang, L; Zhao, L; Zhang, X; Zhang, Q; Jia, Y; Wang, G; Li, S; Tian, D; Li, WH ; Yang, SProceedings of the National Academy of Sciences of the United States of America 116(37), 18479-18487
5402019Molecular systematics of Chiritopsis-like Primulina (Gesneriaceae): one new species, one new name, two new combinations, and new synonymsWei-Bin Xu; Hsuan Chang; Jie Huang; Kuo-Fang Chung Botanical Studies 60(1), 18
5412019Resolving the paradox of environmental quality and sociality: the ecological causes and consequences of cooperative breeding in two lineages of birdsLin, Y.-H; S.-F. Chan; D. R. Rubenstein; M. Liu; S.-F. Shen The American Naturalist 194(2), 207-216
5422019Social–environmental drivers inform strategic management of coral reefs in the AnthropoceneEmily S. Darling; Tim R. McClanahan; Joseph Maina; Georgina G. Gurney; Nicholas A. J. Graham; Fraser Januchowski-Hartley; Joshua E. Cinner; Camilo Mora; Christina C. Hicks; Eva Maire; Marji Puotinen; William J. Skirving; Mehdi Adjeroud; Gabby Ahmadia; Rohan Arthur; Andrew G. Bauman; Maria Beger; Michael L. Berumen; Lionel Bigot; Jessica Bouwmeester; Ambroise Brenier; Tom C. L. Bridge; Eric Brown; Stuart J. Campbell; Sara Cannon; Bruce Cauvin; Chaolun Allen Chen ; Joachim Claudet; Vianney Denis; Simon Donner; Estradivari; Nur Fadli; David A. Feary; Douglas Fenner; Helen Fox; Erik C. Franklin; Alan Friedlander; James Gilmour; Claire Goiran; James Guest; Jean-Paul A. Hobbs; Andrew S. Hoey; Peter Houk; Steven Johnson; Stacy D. Jupiter; Mohsen Kayal; Chao-yang Kuo; Joleah Lamb; Michelle A. C. Lee; Jeffrey Low; Nyawira Muthiga; Efin Muttaqin; Yashika Nand; Kirsty L. Nash; Osamu Nedlic; John M. Pandolfi; Shinta Pardede; Vardhan Patankar; Lucie Penin; Lauriane Ribas-Deulofeu; Zoe Richards; T. Edward Roberts; Ku’ulei S. Rodgers; Che Din Mohd Safuan; Enric Sala; George Shedrawi; Tsai Min Sin; Patrick Smallhorn-West; Jennifer E. Smith; Brigitte Sommer; Peter D. Steinberg; Makamas Sutthacheep; Chun Hong James Tan; Gareth J. Williams; Shaun Wilson; Thamasak Yeemin; John F. Bruno; Marie-Josée Fortin; Martin Krkosek; David MouillotNATURE ECOLOGY & EVOLUTION 3(9), 1341-1350
5432019Lonely giant on the sand: unexpected massive Taiwanese coral, Polycyathus chaishanensis in the Datan algal reef demands a conservation focusChao-Yang KUO; Aichi CHUNG; Shashank KESHAVMURTHY; Ya-Yi HUANG; Sung-Yin YANG; Chaolun Allen Chen Galaxea, Journal of Coral Reef Studies 21(1), 11-12
5442019Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolutionEwers-Saucedo, C.; Owen, C.r L.; Pérez-Losada, M.; Høeg, J. T.; Glenner, H.; Chan, B. K. K. ; Crandall, K. A.PeerJ 7, e7387
5452019Nest predation predicts infanticide in a cooperatively breeding birdCheng, Y.-R.; D. R. Rubenstein; S.-F. Shen Biology Letters 15(8), 20190314
5462019The animal with longest penis in the animal kingdom, barnacles: Its mating behavior and impacted from summer heat stressChan, B. K.K. ; C. Fraser; M. Ganmanee
5472019Crustacean-sponge symbiosis: collecting and maintaining sponge-inhabiting barnacles (Cirripedia: Thoracica: Acastinae) for studies on host specificity and larval biologyYu, M.-C.; G. A. Kolbasov; J. T. Høeg; B. K. K. Chan Journal of Crustacean Biology 39(4), 522-532
5482019Integrating phylogeographic and ecological niche approaches to delimitating cryptic lineages in the blue-green damselfish (Chromis viridis)Liu, SYV; Tuanmu, M-N ; Rachmawati, R; Mahardika, GN; Barber, PHPEERJ 7, e7384
5492019Holocene Population Decline and Conservation Implication for the Western Hercules Beetle, Dynastes grantii (Coleoptera, Scarabaeidae)Jen-Pan Huang Journal of Heredity 110(5), 629-637
5502019Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scopariumChen, Ko-Hsuan ; Liao, Hui‐Ling; Bellenger, Jean‐Philippe; Lutzoni, FrançoisEnvironmental Microbiology 21(7), 2273-2289
5512019New record of the encrusting alga Ramicrusta textilis overgrowing corals in the lagoon of Dongsha Atoll, South China SeaCarolin Nieder; Pin-Chen Chen; Chen; Chaolun Allen Chen ; Shao-Lun LiuBulletin of Marine Science 95(3), 459-462
5522019Complete mitochondrial genome of the hydrothermal vent stalked barnacle Vulcanolepas fijiensis (Cirripedia, Scalpelliforms, Eolepadidae)Lee, W.-K.; Mi, K. H.; Chan, B. K. K. ; Ju, S.-J.; Kim, S.-J.Mitochondrial DNA Part B 4(2), 2725-2726
5532019Taxonomical Review of Pedicularis ser. Verticillatae (Orobanchaceae) in TaiwanKaori Murayama; Richard H. Ree; Kuo-Fang Chung ; Chih-Chieh Yu; Noriyuki FuijiACTA PHYTOTAXONOMICA ET GEOBOTANICA 70(2), 103-118
5542019Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov.Shih-Hui Liu; Yu-Hsin Tseng; Diati Zure; Rosario Rivera Rubite; Teodora D. Balangcod; Ching-I Peng; Kuo-Fang Chung PHYTOTAXA 407(1), 5-21
5552019Sequential changes in the host gut microbiota during infection with the intestinal parasitic nematode Strongyloides venezuelensisT Afrin; K Murase; A Kounosu; VL Hunt; M Bligh; Y Maeda; A Hino; H Maruyama; IJ Tsai ; T KikuchiFRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 9, 217
5562019Human mediated translocation of Pacific paper mulberry [Broussonetia papyrifera (L.) L’Hér. ex Vent. (Moraceae)]: genetic evidence of dispersal routes in Remote OceaniaGabriela Olivares; Bárbara Peña-Ahumada; Johany Peñailillo; Claudia Payacán; Ximena Moncada; Monica Saldarriaga-Córdoba; Elizabeth Matisoo-Smith; Kuo-Fang Chung ; Daniela Seelenfreund; Andrea SeelenfreundPLoS ONE 14(6), e0217107
5572019Potential Industrial Production of a Well-Soluble, Alkaline-Stable, and Anti-Inflammatory Isoflavone Glucoside from 8-Hydroxydaidzein Glucosylated by Recombinant Amylosucrase of Deinococcus geothermalisChang, TS; Wang, TY ; Yang, SY; Kao, YH; Wu, JY; Chiang, CMMolecules 24(12), 2236
5582019Reconstructing reef fish communities using fish otoliths in coral reef sedimentsLin, Chien-Hsiang ; De Gracia, B.; Pierotti, M.E.R.; Andrews, A.H.; Griswold, K.; O’Dea, A.PLOS ONE 14(6), e0218413
5592019Haloviruses: the bad, the worse and the surprisingDyall-Smith Mike; Sen-Lin Tang ; Pfeiffe FriedhelmStudia Universitatis Babes-Bolyai, Biologia 64(1), 51
5602019有「構」厲害章璿; 鍾國芳 台灣博物季刊 38卷2期(142期),頁56-65
5612019Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota)Widhelm, Todd J.; Grewe, Felix; Huang, Jen-Pan ; Mercado-Díaz, Joel A.; Goffinet, Bernard; Lücking, Robert; Moncada, Bibiana; Mason-Gamer, Roberta; Lumbsch, H. ThorstenScientific Reports 9, 8968
5622019Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical eventsHuang, Jen-Pan ; Kraichak, Ekaphan; Leavitt, Steven D.; Nelsen, Matthew P.; Lumbsch, H. ThorstenScientific Reports 9, 8518
5632019Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnoverGomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH Molecular Biology and Evolution 36(6), 1148-1161
5642019A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals.Andrea M. Quattrini; Tiana Wu; Keryea Soong; Ming-Shiou Jeng ; Yehuda Benayahu; Catherine S. McFaddenBMC Evolutionary Biology 19, 116
5652019Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimesRodrigo Carballo-Bolaños; Vianney Denis; Ya-Yi Huang; Shashank Keshavmurthy; Chaolun Allen Chen PLOS ONE 14(6), e0218801
5662019Taxonomy Based Performance Metrics for Evaluating Taxonomic Assignment MethodsChung-Yen Chen; Sen-Lin Tang ; Seng-Cho ChouBMC BIOINFORMATICS 20, 310
5672019Windows for animals: Understanding the functions of the unique window structure in the shell of Sponge-inhabiting barnacles.Yu, M.-C.; Y. H. Wong; G. A. Kolbasov; N. Wada; S.-L. Tang; B. K. K. Chan 
5682019Population genomics of Paper mulberry supports the “out of Taiwan” hypothesis of Austronesian expansion and migrationKuo-Fang Chung 
5692019以愛知目標角度檢視台灣的海洋保育工作邵廣昭 生物多樣性專書(5)上課了—愛知目標全球行動,頁16-21
5702019Soil bacterial and fungal communities of six bahiagrass cultivarsBeule, Lukas; Chen, Ko-Hsuan ; Hsu, Chih-Ming; Mackowiak, Cheryl; Dubeux Jr., Jose C.B.; Blount, Ann; Liao, Hui-LingPeerJ 7, e7014
5712019Citizen science meets integrated taxonomy to uncover the diversity and distribution of Corallimorpharia in SingaporeRen Min Oh; Mei Lin Neo; Nicholas Wei Liang Yap; Sudhanshi Sanjeev Jain; Ria Tan; Chaolun Allen Chen ; Danwei HuangRAFFLES BULLETIN OF ZOOLOGY 67, 306-321
5722019Filamentous calcareous alga provides substrate for coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll, TaiwanCarolin Nieder; Chen-Pan Liao; Chaolun Allen Chen ; Shao-Lun LiuPLOS ONE 14(5), e0200864
5732019TaiBIF開放性資料庫:串接國際丶共享全球保育知識邵廣昭 生物多樣性專書(5)上課了—愛知目標全球行動,頁187-193
5742019A systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion.Shaw, G.T.W.; Weng, C.Y.; Chen, C.Y.; Weng, F.C.H.; Wang, D. SCIENTIFIC REPORTS 9, 6560
5752019Enlarged and highly repetitive plastome of Lagarostrobos and plastid phylogenomics of PodocarpaceaeSudianto, E; Wu, CS; Leonhard, L; Martin, WF; Chaw, SM Molecular Phylogenetics and Evolution 133, 24-32
5762019Evolution of the latitudinal diversity gradient in the hyperdiverse ant genus PheidoleEconomo, Evan P.; Huang, Jen-Pan ; Fischer, Georg; Sarnat, Eli M.; Narula, Nitish; Janda, Milan; Guénard, Benoit; Longino, John T.; Knowles, L. LaceyGlobal Ecology and Biogeography 28(4), 456-470
5772019Spatial and temporal variations in species diversity of fish assemblages near a sewage treatment plant in northern TaiwanChen, H.; C.-Y. Chen; K.-T. Shao ; G.-C. GongFISHERIES SCIENCE 85, 581-590
5782019The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergenceCho, HY; Lu, MJ ; Shih, MC New phytologist 222(1), 366-381
5792019Daisy, Ludwigia, Begonia and HAST: Dr. Ching-I Peng’s Botanical LegacyKuo-Fang Chung 
5802019Structure and diversity of soil bacterial communities in offshore islandsLin, Y.T.; Lin, Y.F.; Tsai, I.J. ; Chang, E.H.; Jien, S.H.; Lin, Y.J.; Chiu, C.Y. Scientific Reports 9, 4689
5812019Urban blue: A global analysis of the factors shaping people's perceptions of the marine environment and ecological engineering in harboursStrain, E.M.A.; Alexander, K.A.; Kienker, S.; Morris, R.; Jarvis, R.; Coleman, R.; Bollard, B.; Firth, L.B.; Knights, A.M.; Grabowski, J.H.; Airoldi, L.; Chan, B.K.K. ; Chee, S.Y.; Cheng, Z.; Coutinho, R.; de Menezes, R.G.; Ding, M.; Dong, Y.; Fraser, C.M.L.; Gómez, A.G.; Juanes, J.A.; Mancuso, P.; Messano, L.V.R.; Naval-Xavier, L.P.D.; Scyphers, S.; Steinberg, P.; Swearer, S.; Valdor, P.F.; Wong, J.X.Y.; Yee, J.; Bishop, M.J.Science of The Total Environment 658, 1293-1305
5822019The formation of lunule-like hollows in shells of the acorn barnacle Tetraclitella chinensis (Nilsson-Cantell, 1921), with a reappraisal of the taxonomic status of T. multicostata (Nilsson-Cantell, 1930) (Cirripedia: Tetraclitidae)Kim, H. K.; B. K. K. Chan ; G. Xu; W. KimJournal of Crustacean Biology 39(2), 136-149
5832019Different species or genetically divergent populations? Integrative species delimitation of the Primulina hochiensis complex from isolated karst habitatsYang, Lihua; Kong, Hanghui; Huang, Jen-Pan ; Kang, MingMolecular Phylogenetics and Evolution 132, 219-231
5842019Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host GenotypeBonito, Gregory; Benucci, Gian Maria Niccolò; Hameed, Khalid; Weighill, Deborah; Jones, Piet; Chen, Ko-Hsuan ; Jacobson, Daniel; Schadt, Christopher; Vilgalys, RytasFrontiers in Microbiology 10, 481
5852019Transcriptome Profile of the Variegated Ficus microcarpa c.v. Milky Stripe Fig LeafTin-Han Shih; Szu-Hsien Lin; Meng-Yuan Huang; Wen-Dar Huang; Chi-Ming Yang INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 20(6), 1338
5862019海洋保護區很重要,但為何難以推動及發揮成效邵廣昭 海洋事務與政策評論 7卷1期,頁143-160
5872019Repetitive sex change in the stony coral Herpolitha limax across a wide geographic rangeLee Eyal-Shaham; Gal Eyal; Kazuhiko Sakai; Yoko Nozawa ; Saki Harii; Frederic Sinniger; Omri Bronstein; Or Ben-Zvi; Tom Shlesinger; Yossi LoyaSCIENTIFIC REPORTS 9, 2936
5882019Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes.Chang, YM; Lin, HH; Liu, WY; Yu, CP; Chen, HJ; Wartini, PP; Kao, YY; Wu, YH; Lin, JJ; Lu, MJ ; Tu, SL ; Wu, SH ; Shiu, SH; Ku, MSB; Li, WH Proceedings of the National Academy of Sciences of the United States of America 116(8), 3091-3099
5892019Reappraisal of Tashiroea as a genus independent of Bredia (Melastomataceae) based on molecular dataGoro Kokubugata; Koh Nakamura; Wen-Hsi Kuo; Qi-Zhe Che; Kuo-Fang Chung ; Chen-Xin Fu; Yumiko Suzuki; Masatsugu YokotaPhytotaxa 392(1), 75-83
5902019Historical demography of four gecko species specializing in boulder cave habitat: implications in the evolutionary dead end hypothesis and conservationHung N. Nguyen; Chia-Wei Lu; Jui-Hua Chu; Larry L. Grismer; Chih-Ming Hung ; Si-Min LinMOLECULAR ECOLOGY 28(4), 772-784
5912019Small segmental duplications in Drosophila—High rate of emergence and eliminationonLi, J.; L. Jiang; C.-I Wu; X. Lu; S. Fang ; C.-T. TingGenome Biology and Evolution 11(2), 486-496
5922019Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide.Fu, CN; Wu, CS; Ye, LJ; Mo, ZQ; Liu, J; Chang, YW; Li, DZ; Chaw, SM ; Gao, LMScientific Reports 9, 2773
5932019Metabolites Involved in Aerobic Degradation of the A and B Rings of EstrogenKan Wu; Tzong-Huei Lee; Yi-Lung Chen; Yu-Sheng Wang; Po-Hsiang Wang; Chang-Ping Yu; Kung-Hui Chu; Yin-Ru Chiang APPLIED AND ENVIRONMENTAL MICROBIOLOGY 85(3), e02223-18
5942019邵老師的海洋講堂—107年海洋講堂系列專書(I)余金妹總編輯; 邱郁文; 邵廣昭 高雄市
5952019A new species of hydrothermal vent stalked barnacle Vulcanolepas (Scalpelliforms: Eolepadidae) from the North Fiji Basin, Southwestern Pacific OceanChan, B.K.K. ; S.-J. Ju; S.-J. KimZootaxa 4563(1), 135-148
5962019ENVirT: inference of ecological characteristics of viruses from metagenomic dataDuleepa Jayasundara; Damayanthi Herath; Damith Senanayake; Isaam Saeed; Cheng-Yu Yang; Yuan Sun; Bill C Chang; Sen-Lin Tang ; Saman K HalgamugeBMC Bioinformatics 19, 377
5972019The niches of nuthatches affect their lineage evolution differently across latitudeYu-Chi Chen; Masoud Nazarizadeh; Fu-Min Lei; Xiao-Jun Yang; Cheng-Te Yao; Feng Dong; Lu Dong; Fa-Sheng Zou; Sergei V. Drovetski; Yang Liu; Chun-Cheng Huang; Chih-Ming Hung MOLECULAR ECOLOGY 28(4), 803-817
5982019Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora paliferaShan-Hua Yang; Kshitij Tandon; Chih-Ying Lu; Naohisa Wada; Chao-Jen Shih; Silver Sung-Yun Hsiao ; Wann-Neng Jane; Tzan-Chain Lee; Chi-Ming Yang; Chi-Te Liu; Vianney Denis; Yu-Ting Wu; Li-Ting Wang; Lina Huang; Der-Chuen Lee ; Yu-Wei Wu; Hideyuki Yamashiro; Sen-Lin Tang Microbiome 7, 3
5992019Stout camphor tree genome fills gaps in understanding of flowering plant genome evolutionChaw, SM ; Liu, YC; Wu, YW; Wang, HY; Lin, CI; Wu, CS; Ke, HM; Chang, LY; Hsu, CY; Yang, HT; Sudianto, E; Hsu, MH; Wu, KP; Wang, LN; Leebens-Mack, JH; Tsai, IJ Nature Plants 5, 63-73
6002019Isoprenyl phenolic ethers from the termite nest-derived medicinal fungus Xylaria fimbriataMei-Chuan Chen; Guei-Jane Wang; Yueh-Hsiung Kuo; Yin-Ru Chiang ; Ting-Yu Cho; Yu-Ming Ju ; Tzong-Huei LeeJOURNAL OF FOOD AND DRUG ANALYSIS 27(1), 111-117
6012019Association between massive Porites and the hidden hermit crab, Calcinus latens (Decapoda, Diogenidae)Shashank Keshavmurthy; Sung-Yin Yang; Chun-Yu Su; Yu-Wen Chiu; Chaolun Allen Chen BULLETIN OF MARINE SCIENCE 95(1), 115-116
6022019Environmental uncertainty and social behaviorShen, S.-F. ; D. R. RubensteinEncyclopedia of Animal Behavior, 2nd Edition (Cambridge, M.A.: Elsevier, Academic Press)
6032019High thermal stress responses of Echinolittorina snails at their range edge predict population vulnerability to future warmingHan, G.-D.; Cartwright, S. R.; Ganmanee, M.; Chan, B. K. K. ; Adzis, K. A. A.; Hutchinson, N.; Wang, J.; Hui, T. Y.; Williams, G. A.; Dong, Y.-W.Science of The Total Environment 647, 763-771
6042019Investigating suspended-sediment transport in a shallow lake using a three-dimensional hydrodynamic and sediment modelLiu, W.C.; Liu, H.M.; Chiu, C.Y. Journal of Earth System Science 128, 29
6052019Characterization of coral-associated microbial aggregates (CAMAs) within tissues of the coral Acropora hyacinthusWada, Naohisa; Ishimochi, Mizuki; Matsui, Taeko; Pollock, Joseph; Tang, Sen-Lin ; Ainsworth, Tracy Danielle; Willis, Bette; Mano, Nobuhiro; Bourne, DavidScientific Reports 9, 14662
6062019Occurrence of zoonotic Cryptosporidium and Giardia duodenalis species/genotypes in urban rodentsTan, TK; Low, VL; Ng, WH; Ibrahim, J; Wang, D ; Tan, CH; Chellappan, S; Lim, YALParasitology international 69, 110-113
6072019Two Independent Plastid accD Transfers to the Nuclear Genome of Gnetum and Other Insights on Acetyl-CoA Carboxylase Evolution in GymnospermsSudianto, E; Chaw, SM Genome biology and evolution 11(6), 1691-1705
6082019Changes in nutrient and heavy metal content levels of sawdust due to vermicomposting by Allomyrina dichotoma subsp. tunobosonisNguyen, H.C.; Z.W. Yang; M.Y. Huang; K.H. Lin; C.M. Yang ; M.K. NguyenBioTechnologia 100(2) 111-114
6092019Feather evolution from precocial to altricial birdsChen, C-K; H-F Chuang; S-M Wu; W-H Li Zoological Studies 58, e24
6102019Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approachesJaspers, Cornelia; Fraune, Sebastian; Arnold, A. Elizabeth; Miller, David J.; Bosch, Thomas C.G.; Voolstra, Christian R.; Tang, Sen-Lin ; Consortium of Australian Academy of Science Boden Research Conference ParticipantsZoology 133, 81-87
6112019Acoel genome reveals the regulatory landscape of whole-body regenerationGehrke, AR; Neverett, E; Luo, YJ ; Brandt, A; Ricci, L; Hulett, RE; Gompers, A; Ruby, JG; Rokhsar, DS; Reddien, PW; Srivastava, MScience 363(6432), eaau6173
6122019沉積物中的時空膠囊─魚類耳石林千翔 科學月刊 第591期,頁46-51
6132019Barn Swallow Nest Predation by a Recent Urban Invader, the Taiwan Whistling Thrush – Implications for the Evolution of Urban Avian CommunitiesJhih-Syuan Wang; Chih-Ming Hung ZOOLOGICAL STUDIES 58, 1
6142019Predicting clinical outcomes of cirrhosis patients with hepatic encephalopathy from the fecal microbiome.Sung, CM; Lin, YF; Chen, KF; Ke, HM; Huang, HY; Gong, YN; Tsai, WS; Lu, MJ ; Cheng, HT; Lin, CY; Kuo, CJ; Tsai, IJ ; Hsieh, SYCellular and molecular gastroenterology and hepatology 8(2), 301-318.e2
6152019Too hot for sex: mating behaviour and fitness in the intertidal barnacle Fistulobalanus albicostatus under extreme heat stressFraser, C.M.L.; B.K.K. Chan Marine Ecology Progress Series 610, 99-108
6162019Source separation in ecoacoustics: A roadmap towards versatile soundscape information retrievalLin, Tzu-Hao ; Tsao, Yu Remote Sensing in Ecology and Conservation 6(3), 236-247
6172019TaiwanDenis, V; Soto, D; De Palmas, S; Lin, YTV; Benayahu, Y; Huang, YM; Liu, SL; Chen, JW; Chen, Q; Sturaro, N; Ho, MJ ; Su, Y; Dai, CF; Chen, CAMesophotic coral ecosystems (Springer International Publishing)
6182019Degradome Sequencing in PlantsShih-Shun Lin; Yihua Chen; Mei-Yeh Jade Lu Plant MicroRNAs - Methods and Protocols (USA : MiMB Springer, Humana Press)
6192018Biogeography of functional trait diversity in the Taiwanese reef fish faunaDenis, Vianney; Chen, Jian-Wen; Chen, Qi; Hsieh, Yunli Eric; Lin, Yuting Vicky; Wang, Ching-Wei; Wang, Hui-Yu ; Sturaro, NicolasEcology and Evolution 9(1), 522-532
6202018The Octocorals of Dongsha Atoll (South China Sea): An Iterative Approach to Species Identification Using Classical Taxonomy and Molecular BarcodesBenayahu, Y.; L. P. Ofwegen; C. F. Dai; M.S. Jeng ; K. Soong; A. Shlagman; S. W. Du.; P. Hong; N. Iman; A. Y. Y. Chung; C. S. Mc FaddenZoological Studies 57, 50
6212018Biotransformation of Ganoderic Acid A to 3-O-Acetyl Ganoderic Acid A by Soil-isolated Streptomyces sp.Chang, TS; Ko, HH; Wang, TY ; Lee, CH; Wu, JYFermentation 4(4), 101
6222018Enhancing the abiotic stress tolerance of plants: From chemical treatment to biotechnological approachesNguyen, Hoang Chinh; Lin, Kung-Huan; Ho, Shin-Lon; Chiang, Chih-Ming; Yang, Chi-Ming Physiologia Plantarum 164(4), 452-466
6232018The Scleractinia (Cnidaria: Anthozoa) of Abu-Musa and Sirri Islands, Persian GulfParisa Alidoost Salimi; Pargol Ghavam Mostafavi; Chaolun Allen Chen ; Seyed Mohammad Reza Fatemi; Michel PichonZOOLOGICAL STUDIES 57, 56
6242018Rapid Expansion of a Highly Germline-Expressed Mariner Element Acquired by Horizontal Transfer in the Fire Ant GenomeLee, Chih-Chi; Wang, John Genome Biology and Evolution 10(12), 3262-3278
6252018Speciation pattern of the horned ghost crab Ocypode ceratophthalmus (Pallas, 1772): An evaluation of the drivers of Indo-Pacific marine biodiversity using a widely distributed speciesMa K. Y.; Chow L. H.; Wong K. J. H.; Chen H.-N.; Ip B. H. Y.; Schubart C. D.; Tsang L. M.; Chan B. K. K. ; Chu K. H.Journal of Biogeography 45(12), 2658-2668
6262018Accumulations of Fossils of the Whale Barnacle Coronula bifida Bronn, 1831 (Thoracica: Coronulidae) Provides Evidence of a Late Pliocene Cetacean Migration Route through the Straits of TaiwanBuckeridge, J. S.; B. K. K. Chan ; S.-W. LeeZOOLOGICAL STUDIES 57, 54
6272018Filamentous calcareous alga provides a substrate for coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll, TaiwanCarolin Nieder; Chaolun Allen Chen ; Shao-Lun LiubioRxiv, 363796
6282018Doublesex Evolution Is Correlated with Social Complexity in AntsJia, Ling-Yi; Chen, Li; Keller, Laurent; Wang, John ; Xiao, Jin-Hua; Huang, Da-WeiGenome Biology and Evolution 10(12), 3230-3242
6292018Description of A New Species of the Gudgeon Genus Microphysogobio mori 1934 (Cypriniformes: Cyprinidae) from Guangdong Province, Southern ChinaHuang, S.P.; I.S. Chen; Y.H. Zhao; K.T. Shao Zoological Studies 57, 58
6302018Influences of climate variability on the acoustic diversity of bat communities.Chen, K-Y; Ho, C-K; Tuanmu, M-N 
6312018Use of biodiversity open data to understand altitudinal migration patterns of resident birds in global mountain regions. (Presentation Award)Tsai, P-Y; Ko, C-J; Lu, Y-J; Hsieh, C; Tuanmu, M-N 
6322018Extracting information on bat activities from long-term ultrasonic recordings through sound separation.Lee, C-Y; Lin, T-Z; Tuanmu, M-N 
6332018Characterization of phosphorus in subtropical coastal sand dune forest soilsLin, C.W.; Tian, G.; Pai, C.W.; Chiu, C.Y. Forests 9(11), 710
6342018Uridine Diphosphate-Dependent Glycosyltransferases from Bacillus subtilis ATCC 6633 Catalyze the 15-O-Glycosylation of Ganoderic Acid AChang, TS; Wu, JY; Wang, TY ; Wu, KY; Chiang, CMInternational Journal of Molecular Sciences 19(11), 3469
6352018Information retrieval from a soundscape by using blind source separation and clusteringLin, T-Z; Akamatsu, T; Tsao, Y; Tuanmu, M-N 
6362018Response to Qian et al. (2017): Daily and seasonal climate variations are both critical in the evolution of species’ elevational range sizeChan, W.-P.; I.-C. Chen; R. K. Colwell; W.-C. Liu ; C.-Y. Huang; S.-F. Shen JOURNAL OF BIOGEOGRAPHY 45(12), 2832-2836
6372018Stable isotope analyses reveal previously unknown trophic mode diversity in the HymenochaetalesKorotkin, Hailee B.; Swenie, Rachel A.; Miettinen, Otto; Budke, Jessica M.; Chen, Ko-Hsuan ; Lutzoni, François; Smith, Matthew E.; Matheny, P. BrandonAmerican Journal of Botany 105(11), 1869-1887
6382018Largescale mullet (Planiliza macrolepis) can recover from thermal pollution-induced malformationsShao, Y.T.; S. Y. Chang; H. Y. Chang; Y. C. Tseng ; K.T. Shao PLoS One 13(11), e0208005
6392018MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated databaseLeray, M; Ho, SL; Lin, IJ; Machida, RJ BIOINFORMATICS 34(21), 3753-3754
6402018Risk‐sensitive planning for conserving coral reefs under rapid climate changeHawthorne L. Beyer; Emma V. Kennedy; Maria Beger; Chaolun Allen Chen ; Joshua E. Cinner; Emily S. Darling; C. Mark Eakin; Ruth D. Gates; Scott F. Heron; Nancy Knowlton; David O. Obura; Stephen R. Palumbi; Hugh P. Possingham; Marji Puotinen; Rebecca K. Runting; William J. Skirving; Mark Spalding; Kerrie A. Wilson; Sally Wood; John E. Veron; Ove Hoegh‐GuldbergConservation Letters 11(6), e12587
6412018Repeated and Prolonged Temperature Anomalies Negate Symbiodiniaceae Genera Shuffling in the Coral Platygyra verweyi (Scleractinia; Merulinidae)Kuo-Wei Kao; Shashank Keshavmurthy; Cing-Hsin Tsao; Jih-Terng Wang; Chaolun Allen Chen ZOOLOGICAL STUDIES 57, 55
6422018Phylogenetic, ecological and biomechanical constraints on larval form: A comparative morphological analysis of barnacle naupliiWong, J. Y.; Chan, K. Y. Karen; Chan, B. K. K. PLOS ONE 13(11), e0206973
6432018Complete mitochondrial genome of the deep-water epibiotic stalked barnacle, Glyptelasma annandalei (Cirripedia, Lepadiformes, Poecilasmatidae)Kim, R.-O.; Chan, B. K. K. ; Hou, B. K.; Ju, S.-J.; Kim, S.-J.MITOCHONDRIAL DNA PART B-RESOURCES 4(1), 99-100
6442018Microbial functional responses to cholesterol catabolism in denitrifying sludgeSean Ting-Shyang Wei; Yu-Wei Wu; Tzong-Huei Lee; Yi-Shiang Huang; Cheng-Yu Yang; Yi-Lung Chen; Yin-Ru Chiang mSystems 3(5), e00113-18
6452018Opsin gene expression regulated by testosterone level in a sexually dimorphic lizardTseng, WH; Lin, JW; Lou, CH; Lee, KH; Wu, LS; Wang, TY ; Wang, FY; Irschick, DJ; Lin, SMScientific Reports 8, 16055
6462018From an Old Eroded Carapace: Rediscovery of the Majid Crab Leptomithrax sinensis Rathbun, 1916 (Crustacea, Brachyura, Majidae) from Taiwan and JapanKingsley J. H. Wong; Peter K. L. Ng; Ming-Shiou Jeng Zoological Studies 57, 49
6472018Trophic structure and energy flow in a shallow-water hydrothermal vent: Insights from a stable isotope approachChang, N. N.; L. H. Lin; T. H. Tu; M. S. Jeng ; Y. Chikaraishi; P. L. WangPLoS One 13(10), e0204753
6482018Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China SeaSung-Yin Yang; Hsing-Ju Chen; Ming-Jay Ho ; Yen-Jia Chen; Ya-Yi Huang; Wenhua Savanna Chow; Sen-Lin Tang ; Ming-Shiou Jeng ; Chaolun Allen Chen BULLETIN OF MARINE SCIENCE 94(4), 1543-1544
6492018First report on the complete mitochondrial genome of the deep-water scalpellid barnacle Arcoscalpellum epeeum (Cirripedia, Thoracica, Scalpellidae)Kim, S.-J.; H. M. Kang; L. Corbari; B. K. K. Chan MITOCHONDRIAL DNA PART B-RESOURCES 3(2) 1288-1289
6502018Eliminating interference by anthocyanins when determining the porphyrin ratio of red plant leavesTzan-Chain Lee; Tin-Han Shih; Meng-Yuan Huang; Kuan-Hung Lin; Wen-Dar Huang; Chi-Ming Yang JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B: BIOLOGY 187, 106-112
6512018Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, TaiwanStephane De Palmas; Derk R. Sato; Vianney Denis; Min-Jay Ho ; Chaolun Allen Chen PeerJ 6, e5797
6522018The effects of contemporary selection and dispersal limitation on the community assembly of acidophilic microalgaeHsieh, Chia-Jung; Zhan, Shing Hei; Liao, Chen-Pan; Tang, Sen-Lin ; Wang, Liang-Chi; Watanabe, Tsuyoshi; Geraldino, Paul John L.; Liu, Shao-LunJournal of Phycology 54(5), 720-733
6532018Complete mitochondrial genome of the catophragmid barnacle Catomerus polymerus (Cirripedia, Thoracica, Balanomorpha, Catophragmidae)Chan, B. K. K. ; L. Aguilar; B. K. Hou; H. M. Kang; S.-J. KimMITOCHONDRIAL DNA PART B-RESOURCES 3(2), 1286-1287
6542018Transcriptome profile of cup-shaped galls in Litsea acuminata leavesTin-Han Shih; Szu-Hsien Lin; Meng-Yuan Huang; Chih-Wen Sun; Chi-Ming Yang PLOS ONE 13(10), e0205265
6552018Towards reconstructing the ancestral brain gene-network regulating caste differentiation in antsQiu Bitao; Larsen Rasmus Stenbak; Chang Ni-Chen; Wang, John ; Boomsma Jacobus J.; Zhang GuojieNature Ecology & Evolution 2, 1782-1791
6562018Extracting information on bat activities from long-term ultrasonic recordings through sound separation.Lee, C-Y; Lin, T-H; Tuanmu, M-N 
6572018Improving acoustic monitoring of biodiversity using deep learning-based source separation algorithms. International Conference on Ecological InformaticsTuanmu, M-N ; Lin, T-H; Huang, JC-C; Tsao, Y; Lee, C-Y
6582018New Triterpenoid from Novel Triterpenoid 15-O-Glycosylation on Ganoderic Acid A by Intestinal Bacteria of ZebrafishChang, TS; Chiang, CM; Wang, TY ; Lee, CH; Lee, YW; Wu, JYMolecules 23(9), 2345
6592018Production of New Isoflavone Glucosides from Glycosylation of 8-Hydroxydaidzein by Glycosyltransferase from Bacillus subtilis ATCC 6633Chiang, CM; Wang, TY ; Yang, SY; Wu, JY; Chang, TSCatalysts 8(9), 387
6602018Identification of enantiomeric byproducts during microalgae-mediated transformation of metoprolol by MS/MS spectrum based networkingMin Lv; Ching Lo; Cheng-Chih Hsu; Yuwen Wang; Yin-Ru Chiang ; Qian Sun; Yang Wu; Yan Li; Lingxin Chen; Chang-Ping YuFRONTIERS IN MICROBIOLOGY 9, 2115
6612018臺灣西南部嘉義牛埔地區常見的早更新世魚類耳石 (Common early Pleistocene fish otoliths from Niubu in Chia-Yi County, southwestern Taiwan)林千翔 ; 王良傑; 王嘉祥; 張至維國立臺灣博物館學刊 (Journal of the National Taiwan Museum) 第71卷3期,頁47-68
6622018A new species of Berberis Sect. Wallichianae from Taiwan, Berberis moriiJulian Harber; Kuo-Fang Chung ; Chih-Chieh YuTaiwania 63(3), 235-240
6632018Taiwanese Leucothoidae (Crustacea: Amphipoda), Including Three New Species from Dongsha AtollWhite, KN; Machida, RJ ZOOLOGICAL STUDIES 57, 47
6642018Multitasking and the evolution of optimal clutch size in fluctuating environmentsLiu, M.; D. R. Rubenstein; S.-A. Cheong; S.-F. Shen ECOLOGY AND EVOLUTION 8(17), 8803-8817
6652018Phylogenetically distinct methanotrophs modulate methane oxidation in rice paddies across Taiwan.Shiau, Y.J.; Cai, Y.; Jia, Z; Chen, C.L.; Chiu, C.Y. Soil Biology & Biochemistry 124, 59-69
6662018Effects of reforestation on the structure and diversity of bacterial communities in subtropical low mountain forest soilsLin, Y.T.; Whitman, W.B.; Coleman, D.C.; Chiu, C.Y. Frontiers in Microbiology 9, 1968
6672018Influences of environmental heterogeneity on the beta-diversity patterns of breeding birds on a sub-tropical island.Hsieh, C; Tuanmu, M-N 
6682018How and why do birds migrate along altitudinal gradients between seasons?Tsai, P-Y; Ko, C-J; Lu, Y-J; Tuanmu, M-N 
6692018Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in TaiwanDerek Soto; Stephane De Palmas; Ming Jay Ho ; Vianney Denis; Chaolun Allen Chen PLoS One 13(8), e0202586
6702018Effects of environmental heterogeneity on beta diversity of breeding birds across spatial scalesHsieh, C; Tuanmu, M-N 
6712018Identifying a large number of high-yield genes in rice by pedigree analysis, whole-genome sequencing, and CRISPR-Cas9 gene knockout.Huang, J; Li, J; Zhou, J; Wang, L; Yang, S; Hurst, LD; Li, WH ; Tian, DProceedings of the National Academy of Sciences of the United States of America 115(32), E7559-E7567
6722018Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in SiberiaWu, Yu-Ting; Yang, Cheng-Yu; Chiang, Pei-Wen; Tseng, Ching-Hung; Chiu, Hsiu-Hui; Saeed, Isaam; Baatar, Bayanmunkh; Rogozin, Denis; Halgamuge, Saman; Degermendzhi, Andrei; Tang, Sen-Lin Frontiers in Microbiology 9, 1763
6732018Experimental Evolution of Yeast for High-Temperature ToleranceHuang, CJ; Lu, MY ; Chang, YW; Li, WH Molecular biology and evolution 35(8), 1823-1839
6742018Pristionchus nematodes occur frequently in diverse rotting vegetal substrates and are not exclusively necromenic, while Panagrellus redivivoides is found specifically in rotting fruitsFélix, Marie-Anne; Ailion, Michael; Hsu, Jung-Chen; Richaud, Aurélien; Wang, John PLOS ONE 13(8), e0200851
6752018Can genomic variation explain the extinction of the passenger pigeon?Chih-Ming Hung ; Robert M. Zink; Shou-Hsien LiJOURNAL OF AVIAN BIOLOGY 49(8), e01858
6762018Biology and genome of a newly discovered sibling species of Caenorhabditis elegansKanzaki, Natsumi; Tsai, Isheng J.; Tanaka, Ryusei; Hunt, Vicky L.; Liu, Dang; Tsuyama, Kenji; Maeda, Yasunobu; Namai, Satoshi; Kumagai, Ryohei; Tracey, Alan; Holroyd, Nancy; Doyle, Stephen R.; Woodruff, Gavin C.; Murase, Kazunori; Kitazume, Hiromi; Chai, Cynthia; Akagi, Allison; Panda, Oishika; Ke, Huei-Mien; Schroeder, Frank C.; Wang, John ; Berriman, Matthew; Sternberg, Paul W.; Sugimoto, Asako; Kikuchi, TaiseiNature Communications 9, 3216
6772018The influences of thorny bamboo growth on the bacterial community in badland soils of southwestern TaiwanLin, Y.T.; Whtman, W.B.; Coleman, D.C.; Shiau, Y.J.; Jien, S.H.; Chiu, C.Y. Land Degradation & Development 29(8), 2728-2738
6782018How paper mulberry genomics supports the “out of Taiwan” hypothesis of Austronesian expansion and migrationKuo-Fang Chung 
6792018Listening to ecosystem – Asian Soundscape Monitoring Network.Tuanmu, M-N ; Huang, JC-C; Lin, S; Lin, T-H; Lu, S-S; Tsao, Y; Wang, Y-H; Yen, E.
6802018Studying wildlife activities by using soundscape information. International Conference on Earth Observations and Societal ImpactsLin, T-H; Tsao, Y; Huang, JC-C; Tuanmu, M-N 
6812018A Preliminary Study on the Cold-Seep Carbonates of the Maanshan Formation, Hengchun Peninsula, TaiwanJeng, M. S. ; H. S. Mii.; S. C. Chen; S. W. WangCollection and Research 31, 9-23
6822018Engineering the oleaginous red yeast Rhodotorula glutinis for simultaneous β-carotene and cellulase productionPi, HW; Anandharaj, M; Kao, YY; Lin, YJ; Chang, JJ; Li, WH Scientific reports 8, 10850
6832018Begonia lecongkietii (sect. Petermannia), a new species from Mount Dầu, South Central Coast Region, VietnamLý, N.-S.; Peng, C.-I. ; Hughes, M.Edinburgh Journal of Botany 75(2), 167-172
6842018Lamelloplasts and minichloroplasts in Begoniaceae: iridescence and photosynthetic functioningPao, S.-H.; Tsai, P.-Y.; Peng, C.-I. ; Chen, P.-J.; Tsai, C.-C.; Yang, E.-C.; Shih, M.-C.; Chen, J.; Yang, J.-Y.; Chesson, P.; Sheue, C.-R.Journal of Plant Research 131(4), 655-670
6852018BioTIME: A database of biodiversity time series for the AnthropoceneMaria Dornelas; Laura H. Antão; Faye Moyes; Amanda E. Bates; Anne E. Magurran; Dušan Adam; Asem A. Akhmetzhanova; Ward Appeltans; José Manuel Arcos; Haley Arnold; Narayanan Ayyappan; Gal Badihi; Andrew H. Baird; Miguel Barbosa; Tiago Egydio Barreto; Claus Bässler; Alecia Bellgrove; Jonathan Belmaker; Lisandro Benedetti-Cecchi; Brian J. Bett; Anne D. Bjorkman; Magdalena Błażewicz; Shane A. Blowes; Christopher P. Bloch; Timothy C. Bonebrake; Susan Boyd; Matt Bradford; Andrew J. Brooks; James H. Brown; Helge Bruelheide; Phaedra Budy; Fernando Carvalho; Edward Castañeda-Moya; Chaolun Allen Chen ; John F. Chamblee; Tory J. Chase; Laura Siegwart Collier; Sharon K. Collinge; Richard Condit; Elisabeth J. Cooper; J. Hans C. Cornelissen; Unai Cotano; Shannan Kyle Crow; Gabriella Damasceno; Claire H. Davies; Robert A. Davis; Frank P. Day; Steven Degraer; Tim S. Doherty; Timothy E. Dunn; Giselda Durigan; J. Emmett Duffy; Dor Edelist; Graham J. Edgar; Robin Elahi; Sarah C. Elmendorf; Anders Enemar; S. K. Morgan Ernest; Rubén Escribano; Marc Estiarte; Brian S. Evans; Tung-Yung Fan; Fabiano Turini Farah; Luiz Loureiro Fernandes; Fábio Z. Farneda; Alessandra Fidelis; Robert Fitt; Anna Maria Fosaa; Geraldo Antonio Daher Correa Franco; Grace E. Frank; William R. Fraser; Hernando García; Roberto Cazzolla Gatti; Or Givan; Elizabeth Gorgone-Barbosa; William A. Gould; Corinna Gries; Gary D. Grossman; Julio R. Gutierréz; Stephen Hale; Mark E. Harmon; John Harte; Gary Haskins; Donald L. Henshaw; Luise Hermanutz; Pamela Hidalgo; Pedro Higuchi; Andrew Hoey; Gert Van Hoey; Annika Hofgaard; Kristen Holeck; Robert D. Hollister; Richard Holmes; Mia Hoogenboom; Chih-hao Hsieh; Stephen P. Hubbell; Falk Huettmann; Christine L. Huffard; Allen H. Hurlbert; Natália Macedo Ivanauskas; David Janík; Ute Jandt; Anna Jażdżewska; Tore Johannessen; Jill Johnstone; Julia Jones; Faith A. M. Jones; Jungwon Kang; Tasrif Kartawijaya; Erin C. Keeley; Douglas A. Kelt; Rebecca Kinnear; Kari Klanderud; Halvor Knutsen; Christopher C. Koenig; Alessandra R. Kortz; Kamil Král; Linda A. Kuhnz; Chao-Yang Kuo; David J. Kushner; Claire Laguionie-Marchais; Lesley T. Lancaster; Cheol Min Lee; Jonathan S. Lefcheck; Esther Lévesque; David Lightfoot; Francisco Lloret; John D. Lloyd; Adrià López-Baucells; Maite Louzao; Joshua S. Madin; Borgþór Magnússon; Shahar Malamud; Iain Matthews; Kent P. McFarland; Brian McGill; Diane McKnight; William O. McLarney; Jason Meador; Peter L. Meserve; Daniel J. Metcalfe; Christoph F. J. Meyer; Anders Michelsen; Nataliya Milchakova; Tom Moens; Even Moland; Jon Moore; Carolina Mathias Moreira; Jörg Müller; Grace Murphy; Isla H. Myers-Smith; Randall W. Myster; Andrew Naumov; Francis Neat; James A. Nelson; Michael Paul Nelson; Stephen F. Newton; Natalia Norden; Jeffrey C. Oliver; Esben M. Olsen; Vladimir G. Onipchenko; Krzysztof Pabis; Robert J. Pabst; Alain Paquette; Sinta Pardede; David M. Paterson; Raphaël Pélissier; Josep Peñuelas; Alejandro Pérez-Matus; Oscar Pizarro; Francesco Pomati; Eric Post; Herbert H. T. Prins; John C. Priscu; Pieter Provoost; Kathleen L. Prudic; Erkki Pulliainen; B. R. Ramesh; Olivia Mendivil Ramos; Andrew Rassweiler; Jose Eduardo Rebelo; Daniel C. Reed; Peter B. Reich; Suzanne M. Remillard; Anthony J. Richardson; J. Paul Richardson; Itai van Rijn; Ricardo Rocha; Victor H. Rivera-Monroy; Christian Rixen; Kevin P. Robinson; Ricardo Ribeiro Rodrigues; Denise de Cerqueira Rossa-Feres; Lars Rudstam; Henry Ruhl; Catalina S. Ruz; Erica M. Sampaio; Nancy Rybicki; Andrew Rypel; Sofia Sal; Beatriz Salgado; Flavio A. M. Santos; Ana Paula Savassi-Coutinho; Sara Scanga; Jochen Schmidt; Robert Schooley; Fakhrizal Setiawan; Kwang-Tsao Shao ; Gaius R. Shaver; Sally Sherman; Thomas W. Sherry; Jacek Siciński; Caya Sievers; Ana Carolina da Silva; Fernando Rodrigues da Silva; Fabio L. Silveira; Jasper Slingsby; Tracey Smart; Sara J. Snell; Nadejda A. Soudzilovskaia; Gabriel B. G. Souza; Flaviana Maluf Souza; Vinícius Castro Souza; Christopher D. Stallings; Rowan Stanforth; Emily H. Stanley; José Mauro Sterza; Maarten Stevens; Rick Stuart-Smith; Yzel Rondon Suarez; Sarah Supp; Jorge Yoshio Tamashiro; Sukmaraharja Tarigan; Gary P. Thiede; Simon Thorn; Anne Tolvanen; Maria Teresa Zugliani Toniato; Ørjan Totland; Robert R. Twilley; Gediminas Vaitkus; Nelson Valdivia; Martha Isabel Vallejo; Thomas J. Valone; Carl Van Colen; Jan Vanaverbeke; Fabio Venturoli; Hans M. Verheye; Marcelo Vianna; Rui P. Vieira; Tomáš Vrška; Con Quang Vu; Lien Van Vu; Robert B. Waide; Conor Waldock; Dave Watts; Sara Webb; Tomasz Wesołowski; Ethan P. White; Claire E. Widdicombe; Dustin Wilgers; Richard Williams; Stefan B. Williams; Mark Williamson; Michael R. Willig; Trevor J. Willis; Sonja Wipf; Kerry D. Woods; Eric J. Woehler; Kyle Zawada; Michael L. ZettlerGLOBAL ECOLOGY AND BIOGEOGRAPHY 27(7), 760-786
6862018Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation SequencingSung-Yin Yang; Wai-Ling Fong; Wenhua Savanna Chow; Chia-Min Hsu; Chia-Ling Carynn Chan; Shashank Keshavmurthy; Chaolun Allen Chen ZOOLOGICAL STUDIES 57, 32
6872018The freshwater snake eel genus Lamnostoma (Anguilliformes: Ophichthidae) in Taiwan, with description of a new speciesChiu, Y. C.; K. T. Shao ; S. P. Huang; H. M. ChenZootaxa 4454(1), 18-32
6882018RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungiChen, Ko-Hsuan ; Liao, Hui-Ling; Arnold, A. Elizabeth; Bonito, Gregory; Lutzoni, FrançoisNew Phytologist 218(4), 1597-1611
6892018Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis.Chang, JJ; Anandharaj, M; Ho, CY; Tsuge, K; Tsai, TY; Ke, HM; Lin, YJ; Ha, Tran, MD; Li, WH ; Huang, CCBiotechnology for biofuels 11, 157
6902018Are barnacles sessile organisms? Drastic movement of the turtle barnacle Chelonibia testudinariaChan, B. K. K. ; J.-C. Lin
6912018Eat microplastics, die early? Do microplastics lead to higher mortality of barnacle larvaeYu, S.-P.; B. K. K. Chan 
6922018Use of biodiversity open data to understand the relationships between functional traits and altitudinal migration patterns of resident birds in Taiwan.Tsai, P-Y; Ko, C-J; Lu, Y-J; Tuanmu, M-N 
6932018Effects of environmental heterogeneities on beta-diversity of breeding birds across spatial scalesHsieh, C; Tuanmu, M-N 
6942018Genome-wide prediction of CRISPR/Cas9 targets in Kluyveromyces marxianus and its application to obtain a stable haploid strain.Lee, MH; Lin, JJ; Lin, YJ; Chang, JJ; Ke, HM; Fan, WL; Wang, TY ; Li, WH Scientific reports 8, 7305
6952018Asynchronous evolution of interdependent nest characters across the avian phylogenyYi-Ting Fang; Mao-Ning Tuanmu ; Chih-Ming Hung NATURE COMMUNICATIONS 9, 1863
6962018Multiple large inversions and breakpoint rewiring of gene expression in the evolution of the fire ant social supergeneHuang, Yu-Ching; Dang, Viet Dai; Chang, Ni-Chen; Wang, John Proceedings of the Royal Society B-Biological Sciences 285(1878), 20180221
6972018Chloroplast and nuclear DNA exchanges among Begonia sect. Baryandra species (Begoniaceae) from Palawan Island, Philippines, and descriptions of five new speciesHughes, M.; Peng, C.-I. ; Lin, C.-W.; Rubite, R. R.; Blanc, P.; Chung, K.-FPlos One 13(5), e0194877
6982018Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majorityPearman, J. K.; Leray, M.; Villalobos, R.; Machida, R. J. ; Berumen, M. L.; Knowlton, N.; Carvalho, S.Scientific Reports 8(1), 8090
6992018The complete mitochondrial genome of yellow crazy ant, Anoplolepis gracilipes (Hymenoptera: Formicidae)Lee, Chih-Chi; Wang, John ; Matsuura, Kenji; Yang, Chin-Cheng ScottyMITOCHONDRIAL DNA PART B-RESOURCES 3(2), 622-623
7002018Time series dataset of fish assemblages near thermal discharges at nuclear power plants in northern Taiwan.Chen, H.Y.; C. Y. Chen; K. T. Shao Scientific Data 5, 180085
7012018Begonia qingchengshanensis (sect. Reichenheimia, Begoniaceae), a new species from Sichuan, ChinaLi, H.-Z.; Guan, K.-Y.; Lin, C.-W.; Peng, C.-I. Phytotaxa 349(2), 197-200
7022018Chromosome numbers of Berberis Sect. Wallichianae from Taiwan: a new basis for taxonomic and evolutionary implicationsYu-Lan Huang; Yu-Hsin Tseng; Kuo-Fang Chung ; Chih-Chieh YuTaiwania 63(2), 111-118
7032018Characterization of phosphorus in a toposequence of subtropical perhumid forest soils facing a subalpine lakeShiau, Y.J.; Pai, C.W.; Tsai, J.W.; Liu, W.C.; Yam, R.S.W.; Chang, S.C.; Tang, S.L. ; Chiu, C.Y. Forests 9(6), 294
7042018Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cellsChuang, Trees-Juen ; Chen, Yen-Ju; Chen, Chia-Ying; Mai, Te-Lun; Wang, Yi-Da; Yeh, Chung­Shu; Yang, Min-Yu; Hsiao, Yu-Ting; Chang, Tien-Hsien ; Kuo, Tzu-Chien; Cho, Hsin-Hua; Shen, Chia-Ning  ; Kuo, Hung-Chih ; Lu, Mei-Yeh ; Chen, Yi-Hua; Hsieh, Shan-Chi; Chiang, Tai-WeiNUCLEIC ACIDS RESEARCH 46(7), 3671-3691
7052018Beta-diversity patterns of breeding birds influenced by environmental and climatic heterogeneity in Taiwan.Hsieh, C; Tuanmu, M-N 
7062018Monitoring multi-year macro ocean litter dynamics and backward-tracking simulation of litter origins on a remote island in the South China SeaKo, C. Y.; Y. C. Hsin ; T. L. Yu; K. L. Liu; F. K. Shiah ; M.S. Jeng Environmental Research Letters 13, 044021
7072018Global song divergence in barn swallows (Hirundo rustica): exploring the roles of genetic, geographical and climatic distance in sympatry and allopatryWilkins, M.R.; Scordato, E.S.; Semenov, G.A.; Karaardiç, H.; Shizuka, D.; Rubtsov, A.; Pap, P.L.; Shen, S.-F. ; Safran, R.J.BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY 123(4), 825-849
7082018Three new species of Begonia (section Baryandra, Begoniaceae) from Luzon Island, the PhilippinesRubite, R. R.; Peng, C.-I. ; Chung, K.-F.; Lin, C.-W.; Evangelista, L. T.; Tandang, D. N.; Callado, J. R. C.; Hughes, M.Phytotaxa 347(3), 201-212
7092018A new deep-sea scalpelliform barnacle, Vulcanolepas buckeridgei sp. nov. (Eolepadidae: Neolepadinae) from hydrothermal vents in the Lau BasinCHAN, B. K. K. ; CHANG, Y.-W.Zootaxa 4407(1), 117-129
7102018Dividing and conquering the fastest-growing genus: Towards a natural sectional classification of the mega-diverse genus Begonia (Begoniaceae)Moonlight, Peter W.; Ardi, Wisnu H.; Padilla, Luzmila Arroyo; Chung, Kuo-Fang ; Fuller, Daniel; Girmansyah, Deden; Hollands, Ruth; Jara-Muñoz, Adolfo; Kiew, Ruth; Leong, Wai-Chao; Liu, Yan; Mahardika, Adi; Marasinghe, Lakmini D.K.; O'Connor, Meriel; Peng, Ching-I ; Pérez, Álvaro J.; Phutthai, Thamarat; Pullan, Martin; Rajbhandary, Sangeeta; Reynel, Carlos; Rubite, Rosario R.; Sang, Julia; Scherberich, David; Shui, Yu-Min; Tebbitt, Mark C.; Thomas, Daniel C.; Wilson, Hannah P.; Zaini, Nura H.; Hughes, MarkTaxon 67(2), 267-323
7112018Phylogeography of hydrothermal vent stalked barnacles: a new species fills a gap in the Indian Ocean ‘dispersal corridor’ hypothesisWatanabe, H. K.; Chen, C.; Marie, D. P.; Takai, K.; Fujikura, K.; Chan, B. K. K. Royal Society Open Science 5(4), 172408
7122018Does scale matter? A systematic review of incorporating biological realism when predicting changes in species distributionsSydne Record; Angela Strecker; Mao-Ning Tuanmu ; Lydia Beaudrot; Phoebe Zarnetske; Jonathan Belmaker; Beth GerstnerPloS one 13(4), e0194650(18p)
7132018A suite of global, cross-scale topographic variables for environmental and biodiversity modeling.Amatulli, G; Domisch, S; Tuanmu, M-N ; Parmentier, B; Ranipeta, A; Malczyk, J; Jetz, WScientific Data 5, 180040
7142018Asian soundscape – listening to the ecosystem.Lin, S; Yen, E; Lin, T-H; Wang, Y-H; Tuanmu, M-N ; Huang, C-C; Lu, S-S; Tsao, Y
7152018Temporal dynamics of ultrasonic soundscapes in forests along an elevation gradient: a methodological study.Zhang, P-S; Tsai, W-Y; Tuanmu, M-N 
7162018Improving biodiversity monitoring through soundscape information retrieval.Tsao, Y; Lin, T-H; Tuanmu, M-N ; Huang, C-C; Lee, C-Y; Yao, C-J
7172018Tracing genomic divergence of Vibrio bacteria in the Harveyi clade.Ke, HM; Liu, D; Ogura, Y; Hayashi, T; Urbanczyk, H; Tsai, IJ Journal of bacteriology 18, 1-15
7182018Biochemical and Physiological Characteristics of Photosynthesis in Plants of Two Calathea SpeciesHoang Chinh Nguyen; Kuan-Hung Lin; Tung-Chuan Hsiung; Meng-Yuan Huang; Chi-Ming Yang ; Jen-Hsien Weng; Ming-Huang Hsu; Po-Yen Chen; Kai-Chieh ChangINTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 19(3), 704
7192018Tubuca alcocki, a new pseudocryptic species of fiddler crab from the Indian Ocean, sister to the southeastern African T. urvillei (H. Milne Edwards, 1852) (Crustacea, Decapoda, Brachyura, Ocypodidae)Shih, H.-T.; Chan, B. K. K. ; Ng, P. K. L.ZooKeys 747, 41-62
7202018Constructing a cellulosic yeast host with an efficient cellulase cocktailChang, JJ; Lin, YJ; Lay, CH; Thia, C; Wu, YC; Hou, YH; Huang, CC; Li, WH Biotechnology and bioengineering 115(3), 751-761
7212018Adaptive and plastic variation in growth and maturation of the cutlassfish Trichiurus japonicus in the subtropical Pacific OceanWang, Hui-Yu ; Heino, MikkoFishery Bulletin 116(2), 171-182
7222018Timing of mass spawning in corals: potential influence of the coincidence of lunar factors and associated changes in atmospheric pressure from northern and southern hemisphere case studiesJacqueline Wolstenholme; Yoko Nozawa ; Maria Byrne; William BurkeINVERTEBRATE REPRODUCTION & DEVELOPMENT 62(2), 98-108
7232018Sex-specific metamorphosis of cypris larvae in the androdioecious barnacle Scalpellum scalpellum (Crustacea: Cirripedia: Thoracica) and its implications for the adaptive evolution of dwarf malesDreyer, N.; Olesen, J.; Dahl, R. B.; Chan, B. K. K. ; Høeg, J. T.PLOS ONE 13(2), e0191963
7242018Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon mollyWarren, Wesley C.; García-Pérez, Raquel; Xu, Sen; Lampert, Kathrin P.; Chalopin, Domitille; Stöck, Matthias; Loewe, Laurence; Lu, Yuan; Kuderna, Lukas; Minx, Patrick; Montague, Michael J.; Tomlinson, Chad; Hillier, LaDeana W.; Murphy, Daniel N.; Wang, John ; Wang, Zhongwei; Garcia, Constantino Macias; Thomas, Gregg C. W.; Volff, Jean-Nicolas; Farias, Fabiana; Aken, Bronwen; Walter, Ronald B.; Pruitt, Kim D.; Marques-Bonet, Tomas; Hahn, Matthew W.; Kneitz, Susanne; Lynch, Michael; Schartl, ManfredNature Ecology & Evolution 2, 669-679
7252018Antioxidant Activities of the Methanol Extracts of Various Parts of Phalaenopsis Orchids with White, Yellow, and Purple FlowersHoang Chinh Nguyen; Kuan-Hung Lin; Meng-Yuan Huang; Chi-Ming Yang ; Tin-Han Shih; Tung-Chuan Hsiung; Yen-Chang Lin; Fun-Chi TsaoNOTULAE BOTANICAE HORTI AGROBOTANICI CLUJ-NAPOCA 46(2), 457-465
7262018Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science.Bonebrake, TC; Brown, CJ; Bell, JD; Blanchard, JL; Chauvenet, A; Champion, C; Chen, I-C; Clark, TD; Colwell, RK; Danielsen, F; Dell, AI; Donelson, JM; Evengård, B; Ferrier, S; Frusher, S; Garcia, RA; Griffis, RB; Hobday, AJ; Jarzyna, MA; Lee, E; Lenoir, J; Linnetved, H; Martin, VY; McCormack, PC; McDonald, J; McDonald-Madden, E; Mitchell, N; Mustonen, T; Pandolfi, JM; Pettorelli, N; Possingham, H; Pulsifer, P; Reynolds, M; Scheffers, BR; Sorte, CJB; Strugnell, JM; Tuanmu, M-N ; Twiname, S; Vergés, A; Villanueva, C; Wapstra, E; Pecl, GTBiological Reviews 93(1), 284-305
7272018Draft Genome Sequence of Endozoicomonas acroporae Strain Acr-14T isolated from Acropora coralKshitij Tandon; Pei-Wen Chiang; Wen-Ming Chen; Sen-Lin Tang Genome Annoucement 6(6), e01576-17
7282018Begonia fulgurata (sect. Diploclinium, Begoniaceae), a new species from northern ThailandPeng, C.-I. ; Lin, C.-W.; Phutthai, T.Blumea 62(3), 163-167
7292018Multiple Regulatory Modules Are Required for Scale-to-Feather Conversion.Wu, P; Yan, J; Lai, YC; Ng, CS; Li, A; Jiang, X; Elsey, RM; Widelitz, R; Bajpai, R; Li, WH ; Chuong, CMMolecular biology and evolution 35(2), 417-430
7302018Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations.Sonny T. M. Lee; Shashank Keshavmurthy; Silvia Fontana; Mezaki Takuma; Wen-Hua Chou; Chaolun Allen Chen BMC research notes 11, 119
7312018Plastid Genome Evolution, Volume 85 (1st Edition)Shu-Miaw Chaw ; Robert K. JansenUK
7322018Evolution of gymnosperm plastomesChaw, SM ; Wu, CS; Sudianto, EChaw, SM & R K Jansen (Editors). "Plastid Genome Evolution, Volume 85 (1st Edition)". ISBN: 9780128134573, Academic Press., Chapter 7, 195-216
7332018Temporal dynamics of ultrasonic soundscape in forests along an elevation gradient. (Presentation Award)Zhang, P-S; Tsai, W-Y; Tuanmu, M-N 
7342018Beta-diversity patterns of breeding birds influenced by environmental and climatic heterogeneity in Taiwan.Hsieh, C; Tuanmu, M-N 
7352018The effectiveness of incidence-based analyses in assessing drivers of cave biodiversity. (Presentation Award)Huang, JC-C; Phelps, K; Tuanmu, M-N 
7362018Sound codes – using machine learning to extract bat echolocation calls. Congress of Animal Behavior and EcologyLee, C-Y; Lin, T-H; Tuanmu, M-N 
7372018Influences of functional traits on the altitudinal migration patterns of resident birds in TaiwanTsai, P-Y; Lu, Y-J; Ko, C-J; Tuanmu, M-N 
7382018Functional diversity pattern of bird communities along environmental gradients.Chiang, Y-J; Ho, C-K; Tuanmu, M-N 
7392018Physiological and molecular analyses of chlorophyllase in sweet potatoes with different-colored leavesS. P. Chen; S. Y. Wang; M. Y. Huang; K. H. Lin; S. M. Hua; H. H. Lu; Y. C. Lai; C. M. Yang South African Journal of Botany 114, 272-279
7402018Mitochondrial genome of Tesseropora rosea: molecular evidence for non-monophyly of the genus TetraclitaCai, Y. F.; Shen, X.; Zhou, L.; Chu, K. H.; Chan, B. K. K. MITOCHONDRIAL DNA PART B-RESOURCES 3(1), 92-94
7412018Cirripede Cypris Antennules: How Much Structural Variation Exists Among Balanomorphan Species from Hard-Bottom Habitats?Chan, B. K. K. ; Sari, Alireza; Høeg, Jens T.The Biological Bulletin 233(2), 135-143
7422018Study of Chlorophyll-related Compounds from Dietary Spinach in Human BloodPi-Yu Chao; Meng-Yuan Huang; Wen-Dar Huang; Kuan-Hung Lin; Shiau-Ying Chen; Chi-Ming Yang NOTULAE BOTANICAE HORTI AGROBOTANICI CLUJ-NAPOCA 46(2), 309-316
7432018Litoribrevibacter euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescensShih-Yi Sheu; Pei-Bei Xie; Der-Shyan Sheu; Sen-Lin Tang ; Wen-Ming ChenINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1), 432-437
7442018A novel molecular and chromosomal lineage of the anthropophilic Simulium (Simulium) rufibasis subgroup (Diptera: Simuliidae) in TaiwanLow, VL; Takaoka, H; Adler, PH; Tan, TK; Weng, FC; Chen, CY; Lim, YAL; Ya'cob, Z; Chen, CD; Sofian-Azirun, M; Wang, D Parasitology research 117, 3137-3143
7452018Genetic and Molecular Basis of Feather Diversity in BirdsNg, CS; Li, WH Genome biology and evolution 10(10), 2572-2586
7462018Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian headsLuo, YJ ; Kanda, M; Koyanagi, R; Hisata, K; Akiyama, T; Sakamoto, H; Sakamoto, T; Satoh, NNature Ecology & Evolution 2(1), 141-151
7472018太平島的爭論與南海珊瑚礁保育策略鄭明修 南海評論 2 (世界知識出版社)
7482018Late Quaternary to Recent diversity of fish otoliths from the Red Sea, central Mediterranean, and NE Atlantic sea bottomsLin, Chien-Hsiang ; Chiang, Yun-Peng; Tuset, Víctor Manuel; Lombarte, Antoni; Girone, AngelaGeobios 51(4), 335-358
7492018Genomic analysis of demographic history and ecological niche modeling in the endangered Sumatran Rhinoceros Dicerorhinus sumatrensisH.L. Mays; C.-M. Hung ; P.-J. Shaner; J. Denvir; M. Justice; S.-F. Yang; T.L. Roth; D.A. Oehler; J. Fan; S. Rekulapally; D.A. PrimeranoCURRENT BIOLOGY 28(1), 70-76.e4
7502018潛水聖地-西巴丹的永續之道鄭明修 大自然 第141期,頁89-94
7512018Genetic and molecular basis of the immune system in the brachiopod Lingula anatinaGerdol, M; Luo, YJ ; Satoh, N; Pallavicini, ADevelopmental and Comparative Immunology 82, 7-30
7522018Dual Gene Repertoires for Larval and Adult Shells Reveal Molecules Essential for Molluscan Shell FormationZhao, R; Takeuchi, T; Luo, YJ ; Ishikawa, A; Kobayashi, T; Koyanagi, R; Villar-Briones, A; Yamada, L; Sawada, H; Iwanaga, S; Nagai, K; Satoh, N; Endo, KMolecular Biology and Evolution 35(11), 2751-2761
7532018Begonia austrovietnamica (sect. Alicida, Begoniaceae), a handsome new species from South VietnamPeng, C.-I ; Truong, N.-D.; Nguyen, D.-D.; Lin, C.-W.Phytotaxa 381(1), 95-99
7542018Tupistra cardinalis (Asparagaceae), a new species from limestone areas in northern VietnamAveryanov, L. V.; Tanaka, N.; Son, H. T.; Nguyen, K. S.; Maisak, T. V.; Nguyen, T. H.; Peng, C.-I Phytotaxa 334(1), 60-64
7552018Asian Begonia: 300 Species PortraitsHughes, M.; Peng, C.-I. Taipei & Edinburgh, Scotland
7562018Inferring synteny between genome assemblies: a systematic evaluationLiu, D; Hunt, M; Tsai, IJ BMC bioinformatics 19(1), 26
7572018Identification of Barnacle Shell Proteins by Transcriptome and Proteomic ApproachesWong, Yue Him; Ozaki, Noriaki; Zhang, Wei-Pang; Sun, Jin; Yoshimura, Erina; Oguro-Okano, Mieko; Nogata, Yasuyuki; Lin, Hsiu-Chin; Chan, Benny K. K. ; Qian, Pei-Yuan; Okano, KeijuBiomineralization (Singapore : Springer)
7582018A Newly Designed Primer Revealed High Phylogenetic Diversity of Endozoicomonas in Coral ReefsJia-Ho Shiu; Jiun-Yan Ding; Ching-Hung Tseng; Shueh-Ping Lou; Takuma Mezaki; Yu-Ting Wu; Hsiang-Iu Wang; Sen-Lin Tang MICROBES AND ENVIRONMENTS 33(2), 172-185
7592018Methanolobus psychrotolerans sp. nov., a psychrotolerant methanoarchaeon isolated from a saline meromictic lake in SiberiaSheng-Chung Chen; Hsing-Hua Huang; Chieh-Yin Weng; Hsiu-Hui Chiu; Sen-Lin Tang ; Denis Yu Rogozin; Andrey G. Degermendzhy; Mei-Chin LaiINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(4), 1378-1383
7602018Bacterial community in water and air of two sub-alpine lakes in TaiwanKshitij Tandon; Shan-Hua Yang; Min-Tao Wan; Chia-Chin Yang; Bayanmunkh Baatar; Chih-Yu Chiu ; Jeng-Wei Tsai; Wen-Cheng Liu; Sen-Lin Tang MICROBES AND ENVIRONMENTS 33(2), 120-126
7612017邵老師的海洋講堂—106年海洋講堂系列專書(I)余金妹總編輯; 邵廣昭 高雄市
7622017Shotgun metagenomic analysis of microbial communities in the surface waters of the Eastern South China SeaJessica Song; Aazani Mujahid; Lim, Po-Teen; Azizan Abu Samah; Birgit Quack; Klaus Pfeilsticker; Tang, Sen-Lin ; Elena Ivanova; Moritz MüllerMalaysian Journal of Microbiology 13(4), 350-362
7632017Molecular phylogeny of the Opsariichthys group (Teleostei: Cypriniformes) based on complete mitochondrial genomesHuang, SP; Wang, FY; Wang, TY Zoological Studies 56, 40
7642017Metabolic engineering a yeast to produce astaxanthin.Lin, YJ; Chang, JJ; Lin, HY; Thia, C; Kao, YY; Huang, CC; Li, WH Bioresource technology 245(Pt A), 899-905
7652017Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphyllidae; clade V)Katrina S. Luzon; Mei-Fang Lin; Ma. Carmen A. Ablan Lagman; Wilfredo Roehl Y. Licuanan; Chaolun Allen Chen PeerJ 5, e4074
7662017Coralloluteibacterium stylophorae gen. nov., sp. nov., a new member of the family Lysobacteraceae isolated from the reef-building coral Stylophora sp.Wen-Ming Chen; Pei-Bei Xie; Sen-Lin Tang ; Shih-Yi SheuArchives of microbiology 200(3), 473-481
7672017Four new sponge-inhabiting barnacles of the genus Acasta (Thoracica: Archaeobalanidae: Acastinae) from the Indo-PacificYu, M.-C.; B. K. K. Chan ; Y. Achituv; G. A. KolbasovRAFFLES BULLETIN OF ZOOLOGY 65, 585-615
7682017Survey of Bacterial Community in Corals and Sponges of Taipin IslandSheng-Pin Yu; Hsing-Ju Chen; Sen-Lin Tang 
7692017Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal historyJia-Ho Shiu; Shashank Keshavmurthy; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen ; Sen-Lin Tang SCIENTIFIC REPORTS 7(1), 14933
7702017The rises and falls of opsin genes in 59 ray-finned fish genomes and their implications for environmental adaptationLin, JJ; Wang, FY; Li, WH ; Wang, TY Scientific reports 7(1), 15568
7712017Human body to water reservoirs: Estimating viral population characteristics using high-throughput sequencingDuleepa Jayasundara; Sen-Lin Tang ; Saman K. HalgamugeMetagenomics-Perspectives, Methods, and Applications (USA : Academic Press)
7722017Larval biology of coral and sponge associated barnaclesChan, B. K. K. 
7732017Information retrieval from a soundscape by using blind source separation and clusteringMai, G-S; Yang, F-C; Tuanmu, M-N 
7742017Plastome Evolution in the Sole Hemiparasitic Genus Laurel Dodder (Cassytha) and Insights into the Plastid Phylogenomics of LauraceaeWu, CS; Wang, TJ; Wu, CW; Wang, YN; SM, Chaw GENOME BIOLOGY AND EVOLUTION 9(10), 2604-2614
7752017Biotransformation of Ergostane Triterpenoid Antcin K from Antrodia cinnamomea by Soil-Isolated Psychrobacillus sp. AK 1817Chiang, CM; Wang, TY ; Ke, AN; Chang, TS; Wu, JYCatalysts 7(10), 299
7762017Diverse responses of Symbiodinium types to menthol and DCMU treatmentJih-Terng Wang​; Shashank Keshavmurthy; Tzu-Ying Chu; Chaolun Allen Chen PeerJ 5, e3843
7772017Endozoicomonas acroporae sp. nov., isolated from Acropora coral.Sheu, SY; Lin, KR; Hsu, MY; Sheu, DS; Tang, SL ; Chen, WMINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 67(10), 3791-3797
7782017Influences of functional traits on the altitudinal migration patterns of resident birds in TaiwanTsai, P-Y; Lu, Y-J; Ko, C-J; Tuanmu, M-N 
7792017Effect of landscape characteristics on taxonomic and functional attributes of urban bird communities in Taiwan. (Presentation Award)Lu, Y-J; Chen, W-J; Lin, R-S; Tuanmu, M-N 
7802017Unprecedented calcareous algal reefs in northern Taiwan merit high conservation priorityChing-Yu Liou; Sung-Yin Yang; Chaolun Allen Chen CORAL REEFS 36(4), 1253
7812017Eleven new species of Begonia (Begoniaceae) from Sarawak, BorneoChe-Wei LIN; Shin-Wen CHUNG; Ching-I PENG Taiwania 62(3), 219-251
7822017太平島珊瑚礁生物多樣性的保育策略鄭明修 
7832017How do coral associated invertebrates starting their life in their coral hosts? An example from coral associated barnaclesChan, B. K. K. 
7842017Can functional traits of birds explain their divergent patterns of altitudinal migration?Tsai, P-Y; Lu, Y-J; Ko, C-J; Tuanmu, M-N 
7852017Intraspecific variation reflects drivers of rodent community assembly across the National Ecological Observatory NetworkRead, QD; Grady, JM; Zarnetske, P; Record, S; Baiser, B; Belmaker, J; Tuanmu, M-N ; Strecker, AL; Beaudrot, L; Thibault, KM
7862017Biochemical mechanisms and microorganisms involved in anaerobic testosterone metabolism in estuarine sediments.Chao-Jen Shih; Yi-Lung Chen; Chia-Hsiang Wang; Sean Ting-Shyang Wei; I-Ting Lin; Wael Ahmed Ismail; Yin-Ru Chiang FRONTIERS IN MICROBIOLOGY 8, 1520
7872017Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves.Huang, CF; Yu, CP; Wu, YH; Lu, MJ; Tu, SL; Wu, SH; Shiu, SH; Ku, MSB; Li, WH Proceedings of the National Academy of Sciences of the United States of America 114(33), E6884-E6891
7882017A functional approach to the structural complexity of coral assemblages based on colony morphological featuresVianney Denis; Lauriane Ribas-Deulofeu; Nicolas Sturaro; Chao-Yang Kuo; Chaolun Allen Chen SCIENTIFIC REPORTS 7(1), 9849
7892017Molecular systematics of the anchovy genus Encrasicholina in the Northwest PacificLavoué, Sébastien; Bertrand, Joris A. M.; Wang, Hui-Yu ; Chen, Wei-Jen; Ho, Hsuan-Ching; Motomura, Hiroyuki; Hata, Harutaka; Sado, Tetsuya; Miya, MasakiPLOS ONE 12(7), e0181329
7902017Biogeography of Berberidaceae and biome shiftsChih-Chieh Yu; Erika Edwards; Kuo-Fang Chung 
7912017Reconstructing phylogenetic relationship of Begonia sect. Coelocentrum (Begoniaceae) using targeted enrichment of nuclear genesYu-Hsin Tseng; Catherine Kidner; Kuo-Fang Chung 
7922017A new association between goblet worms (Entoprocta) and xeniid corals (Cnidaria)Vianney Denis; Yu Ting Vicky Lin; Ming Jay Ho MARINE BIODIVERSITY 49, 487-493
7932017Molecular phylogeny of the lower acorn barnacle families (Bathylasmatidae, Chionelasmatidae, Pachylasmatidae, and Waikalasmatidae) (Cirripedia: Balanomorpha) with evidence for revisions in family classificationChan, B. K. K. ; L. Corbari; P. A. Rodriguez Moreno; L. M. TsangZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY 180(3), 542-555
7942017Improving the evaluation of soundscape variability via blind source separation.Lin, T-H; Akamatsu, T; Tuanmu, M-N ; Huang, C-C; Yao, C-J; Fang, S-H; Tsao, Y
7952017Biochemical Mechanisms and Catabolic Enzymes Involved in Bacterial Estrogen Degradation PathwaysYi-Lung Chen; Chang-Ping Yu; Tzong-Huei Lee; King-Siang Goh; Kung-Hui Chu; Po-Hsiang Wang; Wael Ismail; Chao-Jen Shih; Yin-Ru Chiang CELL CHEMICAL BIOLOGY 24(6), 712-724.e7
7962017Living with the marginal coral communities: diversity and host-specificity of coral associated barnacles in the northern coral distribution limit in the East China SeaChan, B. K. K. ; G. Xu; H. K. Kim; J.-H. Park; W. Kim
7972017太平島的爭議與南海珊瑚礁保育鄭明修 
7982017東沙藤壺及海蛞蝓圖鑑陳國勤 ; 張晏瑋台北
7992017國境之南-太平島爭議與南海生態保育鄭明修 科學月刊 第570期,頁466-469
8002017Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in CoralsYang, S-H; Tseng, C-H; Huang, C-R; Chen, C-P; Tandon, K; Lee, STM; Chiang, P-W; Shiu, J-H; Chen, CA ; Tang, S-LFrontiers in Microbiology 8, 1094
8012017Contrasting diversification history between insular and continental species of three-leaved azaleas (Rhododendron sect. Brachycalyx) in East AsiaYoichi, W.; Jin, X.-F.; Peng, C.-I. ; Tamaki, I.; Tomaru, N.Journal of Biogeography 44(5), 1065-1076
8022017Anaerobic biodegradation of steroidsYin-Ru Chiang ; Wael IsmailVolume 5: Anaerobic Utilization of Hydrocarbons, Oils and Lipids (Boll, Matthias, ed.), Handbook of Hydrocarbon and Lipid Microbiology Series (Berlin Heidelberg, Germany : Springer-Verlag)
8032017Development and Characterization of EST-SSR Markers for Begonia luzhaiensis (Begoniaceae)Yu-Hsin Tseng; Han-Yau Huang; Wei-Bin Xu; Hsun-An Yang; Yan Liu; Ching-I Peng ; Kuo-Fang ChungApplications in Plant Sciences 5(5), 1700024
8042017Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae)Qu, XJ; Wu, CS; Chaw, SM ; Yi, TSGenome Biology and Evolution 9(4), 1110-1119
8052017Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China SeaJames Davis Reimer; Maria Eduarda Alves Santos; Hiroki Kise; Mei Lin Neo; Chaolun Allen Chen ; Keryea SoongRegional Studies in Marine Science 12, 49-57
8062017Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa)Yaoyang Chuang; Marcelo Kitahara; Hironobu Fukami; Dianne Tracey; David J. Miller; Chaolun Allen Chen ZOOLOGICAL STUDIES 56, 9
8072017A new species of Microphysogobio (Cypriniformes: Cyprinidae) from Guangxi Province, southern ChinaHuang, S. P.; Zhao, Y. H.; Chen, I-S.; Shao, K. T. ZOOLOGICAL STUDIES 56, 8
8082017Molecular biogeography and host specificity of coral associated barnacles (Cirripedia: Pyrgomatidae) in the Indo-Pacific watersChan, B. K. K. ; N. Yoko; L.-M. Tsang
8092017Biodiversity redistribution under climate change: Impacts on ecosystems and human well-beingPecl, GT; Araújo, MB; Bell, JD; Blanchard, J; Bonebrake, TC; Chen, I-C; Clark, TD; Colwell, RK; Danielsen, F; Evengård, B; Falconi, L; Ferrier, S; Frusher, S; Garcia, RA; Griffis, RB; Hobday, AJ; Janion-Scheepers, C; Jarzyna, MA; Jennings, S; Lenoir, J; Linnetved, HI; Martin, VY; McCormack, PC; McDonald, J; Mitchell, NJ; Mustonen, T; Pandolfi, JM; Pettorelli, N; Popova, E; Robinson, SA; Scheffers, BR; Shaw, JD; Sorte, CJB; Strugnell, JM; Sunday, JM; Tuanmu, M-N ; Vergés, A; Villanueva, C; Wernberg, T; Wapstra, E; Williams, SEScience 355(6332), eaai9214
8102017Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samplesMachida, RJ ; Leray, M; Ho, SL; Knowlton, NScientific Data 4, 170027
8112017DNA barcoding of fisheries catch to reveal composition and distribution of cutlassfishes along the Taiwan coastWang, Hui-Yu ; Dong, Chieh A.; Lin, Hsiu-ChinFisheries Research 187, 103-109
8122017Physico-Chemical Composition of Saline Lakes of the Gobi Desert Region, Western MongoliaB Bayanmunkh; Tang, Sen-Lin ; D Narangarvuu; B Ochirkhuyag; O BolormaaJournal of Earth Science & Climatic Change 8, 2
8132017Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi cladeKe, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung Scientific Reports 7, 41394
8142017Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricataLee, S. T.M.; S. K. Davy; S.-L. Tang ; P. S KenchSCIENTIFIC REPORTS 7, 43600
8152017Occurrence of Mitochondrial CO1 Pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization Indicated by Recombined Nuclear Mitochondrial PseudogenesMachida, RJ ; Lin, YYPLOS ONE 12(2), e0172710
8162017A data-mining framework for exploring the multi-relation between fish species and water quality through self-organizing mapTsai, W. P.; S. P. Huang; K. T. Shao ; C. Y. Lin; F. J. ChangScience of the Total Environment 579, 474-483
8172017Exome Sequencing of Oral Squamous Cell Carcinoma Reveals Molecular Subgroups and Novel Therapeutic Opportunities.Su, SC; Lin, CW; Liu, YF; Fan, WL; Chen, MK; Yu, CP; Yang, WE; Su, CW; Chuang, CY; Li, WH ; Chung, WH; Yang, SFTheranostics 7(5), 1088-1099
8182017Impact factors between echolocation call frequency and body size in bats. (Presentation Award)Chen, K-Y; Huang, JC-C; Tuanmu, M-N 
8192017Using acoustic indices as an ultra-soundscape monitoring tool. (Presentation Award)Zhang, P-S; Huang, JC-C; Tuanmu, M-N 
8202017The evolutionary of bird nest.Fang, Y-T; Tuanmu, M-N ; Hung, C-M
8212017開放資料在生物多樣性保育上的關鍵角色端木茂甯 
8222017Environmental and biodiversity representativeness of global protected area networkMao-Ning Tuanmu ; Walter Jetz
8232017The thermal tolerance of coral-associated bacterial communities acclimated to temperature stress based on seasonal thermal historyJia-Ho Shiu; Keshavmurthy Shashank; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen; Sen-Lin Tang 
8242017Fishing-induced changes in adult length are mediated by skipped-spawningWang, Hui-Yu ; Chen, Ying-Shiuan; Hsu, Chien-Chung; Shen, Sheng-Feng Ecological Applications 27(1), 274-284
8252017Cedar and bamboo plantations alter structure and diversity of the soil bacterial community from a hardwood forest in subtropical mountainLin, Y.T.; Whitman, W.B.; Coleman, D.C.; Jien, S.H.; Chiu, C.Y. Applied Soil Ecology 112, 28-33
8262017Improvement in the biochemical and chemical properties of badland soils by thorny bambooShiau, Yo-Jin; Wang, Hsueh-Ching; Chen, Tsai-Huei; Jien, Shih-Hau; Tian, Guanglong; Chiu, Chih-Yu Scientific Reports 7, 40561
8272017Water salinity effects on growth and nitrogen assimilation rate of mangrove (Kandelia candel) seedlings.Shiau, Y. J.; Lee, S.C.; Chen, T.H.; Tian, G.; Chiu, C.Y. Aquatic Botany 137, 50–55
8282017Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)Qu, XJ; Jin, JJ; Chaw, SM ; Li, DZ; Yi, TSSCIENTIFIC REPORTS 7, 41005
8292017Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)Mei-Fang Lin; Aurelie Moya; Hua Ying; Chaolun Allen Chen ; Ira Cooke; Eldon E. Ball; Sylvain Forêt; David J. MillerGenome Biology and Evolution 9(1), 150-160
8302017Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China SeaShashank Keshavmurthy; Kuo-Hsun Tang; Chia-Min Hsu; Chai-Hsia Gan; Chao-Yang Kuo; Keryea Soong; Hong-Nong Chou; Chaolun Allen Chen PeerJ. 5, e2871
8312017Fish otolith assemblages in Recent sea bottoms and in ancient (Eocene and Miocene) fossiliferous deposits: a comparative study of taxonomy and paleoecologyLin, Chien-Hsiang Bari
8322017Possible co-option of engrailed during brachiopod and mollusc shell developmentShimizu, K; Luo, YJ ; Satoh, N; Endo, KBiology Letters 13(8), 20170254
8332017Cell division and cadherin-mediated adhesion regulate lens epithelial cell movement in zebrafishMochizuki, T; Luo, YJ ; Tsai, HF; Hagiwara, A; Masai, IDevelopment 144(4), 708-719
8342017Fish otoliths in superficial sediments of the Mediterranean SeaLin, Chien-Hsiang ; Taviani, M.; Angeletti, L.; Girone, A.; Nolf, D.PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY 471, 134-143
8352017Fish otoliths from the Lutetian of the Aquitaine Basin (SW France), a breakthrough in the knowledge of the European Eocene ichthyofaunaLin, Chien-Hsiang ; Nolf, D.; Steurbaut, E.; Girone, A.Journal of Systematic Palaeontology 15(11), 879-907
8362017Tortonian teleost otoliths from northern Italy: taxonomic synthesis and stratigraphic significanceLin, Chien-Hsiang ; Brzobohatý, R.; Nolf, D.; Girone, A.European Journal of Taxonomy 322, 1-44
8372017Ontogenetic changes in dietary carbon sources and trophic position of two co-occurring horseshoe crab species in southwestern ChinaFan, LF; Chen, CP ; Yang, MC; Qiu, G; Liao, YY; Hsieh, HL Aquatic Biology 26, 15-26
8382017Identification and evolutionary analysis of long non-coding RNAs in zebra finchChen, CK; Yu, CP; Li, SC; Wu, SM; Lu, MJ; Chen, YH; Chen, DR; Ng, CS; Ting, CT; Li, WH BMC genomics 18(1), 117
8392017Improving the evaluation of soundscape variability via blind source separationLin, Tzu-Hao; Akamatsu, Tomonari; Tuanmu, Mao-Ning ; Huang, Chun-Chia; Yao, Chiou-Ju; Fang, Shih-Hua; Tsao, YuThe Journal of the Acoustical Society of America 142(4), 2502
8402017為明天的魚源滋生利息鄭明修 農訓雜誌 第329期,頁26-31
8412017Begonia ufoides (sect. Coelocentrum, Begoniaceae), a new species from limestone areas in central Guangxi, ChinaYONG-HUA QIN; YONG-YAN LIANG; WEI-BIN XU; CHE-WEI LIN; CHING-I PENG Phytotaxa 316(3), 279-284
8422017Three new species of Begonia sect. Baryandra from Panay Island, PhilippinesChing-I Peng ; Rosario Rivera Rubite; Che-Wei Lin; Mark Hughes; Yoshiko Kono; Kuo-Fang ChungBot Stud 58(1), 28
8432017Begonia myanmarica (Begoniaceae), a new species from Myanmar, and molecular phylogenetics of Begonia sect. MonopteronYu-Hsin Tseng; Young-Dong Kim; Ching-I Peng ; Khin Myo Htwe; Seong-Hyun Cho; Yoshiko Kono; Kuo-Fang ChungBot Stud 58, 21
8442017Notes on two crabs (Crustacea, Brachyura, Dynomenidae and Iphiculidae) collected from red coral beds in northern Taiwan, including a new species of Pariphiculus Alcock, 1896Ng, K. L.; M.S. Jeng Zookeys 694, 135-156
8452017Moulting of the semi-terrestrial crab Chiromantes haematocheir (De Haan, 1833) (Decapoda, Sesarmidae) in TaiwanLiu, H. C.; M. S. Jeng ; R. G. HartnollCRUSTACEANA 90(14), 1731-1745
8462017Two new records of the leucosioid genus Pariphiculus Alcock, 1896 from Taiwan (Decapoda, Brachyura, Iphiculidae)Shih, Y. J.; P. H. Ho; M. S. Jeng CRUSTACEANA 90(11-12), 1367-1371
8472017Begonia ignita (sect. Petermannia, Begoniaceae), a new species with orange flowers from Sulawesi, IndonesiaC.-W. Lin; D.C. Thomas; W.H. Ardi; C.-I Peng Gardens’ Bulletin Singapore 69(1), 89-95
8482017Begonia polyclada (sect. Petermannia, Begoniaceae), a gracile new species from Luzon, PhilippinesCHING-I PENG ; ROSARIO RIVERA RUBITE; CHE-WEI LINPhytotaxa 296(1), 93-97
8492017Three new species of Begonia (Begoniaceae) from Limestone Hills in southwestern Sarawak, BorneoChe-Wei LIN; Ching-I PENG Taiwania 62(2), 105-115
8502016The current population structure of the demersal hairtail (Trichiurus japonicus) in the western north Pacific was shaped by the Taiwan Strait, as revealed by mitochondrial DNATzeng, C.-H.; Chiu, T.-Y.; Chen, C.-S.; Wang, H.-Y. ; Chiu, T.-S.Taiwania 61(4), 279-287
8512016Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new speciesRoberto Arrigoni; Michael L Berumen; Chaolun Allen Chen ; Tullia I Terraneo; Andrew H Baird; Claude Payri; Francesca BenzoniMOLECULAR PHYLOGENETICS AND EVOLUTION 105, 146-159
8522016The recognition and molecular phylogeny of Mugilogobius mertoni complex (Teleostei: Gobiidae), with description of a new cryptic species of M. flavomaculatus from TaiwanHuang, S. P.; I-S. Chen; M. M. N. Yung; K. T. Shao Zoological Studies 55(39), 1-16
8532016Hydrology drives vegetation succession in a tidal freshwater wetland of subtropical TaiwanLin, HJ; Huang, CH; Hwang, GW; Hsu, CB; Chen, CP ; Hsieh, HL Wetlands 36(6), 1109-1117
8542016Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)Chung-Shien Wu; Shu-Miaw Chaw Genome Biology and Evolution 8
8552016Large numbers of vertebrates began rapid population decline in the late 19th century.Li, H; Xiang-Yu, J; Dai, G; Gu, Z; Ming, C; Yang, Z; Ryder, OA; Li, WH ; Fu, YX; Zhang, YPProceedings of the National Academy of Sciences of the United States of America 113(49), 14079-14084
8562016Taxonomic revision of Coralliidae with descriptions of new species from New Caledonia and the Hawaiian ArchipelagoTu, T.H.; C. F. Dai; M. S. Jeng MARINE BIOLOGY RESEARCH 12(10), 1003-1038
8572016Genetic evidence of peripheral isolation and low diversity in marginal populations of the Acropora hyacinthus complexG. Suzuki; S. Keshavmurthy; T. Hayashibara; C. C. Wallace; Y. Shirayama; C. A. Chen ; H. FukamiCORAL REEFS 35(4), 1419-1432
8582016Past, present and future of alpine flora of Taiwan—Insights from integrating phylogeography and species distribution model of Chaerophyllum involucratum (Apiaceae)Kuo-Fang Chung ; Cheng-Te Hsu
8592016Tracking Austronesian expansion and migrations via paper mulberry genomic dataKuo-Fang Chung 
8602016限制酶位點標定之核酸定序法 (RADseq) 在植物多樣性研究之應用:臺灣瓦氏組小檗的輻射種化黃郁嵐; 李宜軒; 游旨价; 陳凱儀; 鍾國芳 
8612016Occurrence of the rare lobster Palinustus unicornutus Berry, 1979(Decapoda : Palinuridae) in Taiwan.Chan, T.Y.; C.C. Lin; M.S. Jeng CRUSTACEANA 89(13), 1501-1507
8622016A new species of Rhinogobius (Teleostei:Gobiidae) from Zhejiang Province, ChinaHuang, S.P.; I-S. Chen; K.-T. Shao Ichthyol Res 63, 470-479
8632016Regulatory Divergence among Beta-Keratin Genes during Bird EvolutionBhattacharjee, MJ; Yu, CP; Lin, JJ; Ng, CS; Wang, TY ; Lin, HH; Li, WH Molecular biology and evolution 33(11), 2769-2780
8642016Morphology of cyprid attachment organs compared across disparate barnacle taxa: Does It relate to habitat?Al-Yahya, H.; H.-N. Chen; B. K. K. Chan ; R. Kado; J. T. HøegBIOLOGICAL BULLETIN 231(2), 120-129
8652016Effect of 40 and 80 years of conifer regrowth on soil microbial activities and community structure in subtropical low mountain forestsChang, E.H.; Chen, T.H.; Tian, G.; Hsu, C.K.; Chiu, C.Y. Forests 7(10), 244
8662016Identification of Comamonas testosteroni as an androgen degrader in sewage.Yi-Lung Chen; Chia-Hsiang Wang; Fu-Chun Yang; Wael Ismail; Po-Hsiang Wang; Chao-Jen Shih; Yu-Ching Wu; Yin-Ru Chiang Scientific Reports 6, 35386
8672016Corallimorpharians are not “naked corals”: insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analysesMei Fang Lin; Wen Hwa Chou; Marcelo V Kitahara; Chao Lun Allen Chen ; David John Miller; Sylvain Foret​PeerJ 4, e2463
8682016When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genusRoberto Arrigoni; Francesca Benzoni; Danwei Huang; Hironobu Fukami; Chaolun Allen Chen ; Michael L. Berumen; Mia Hoogenboom; Damian P. Thomson; Bert W. Hoeksema; Ann F. Budd; Yuna Zayasu; Tullia I. Terraneo; Yuko F. Kitano; Andrew H. BairdCONTRIBUTIONS TO ZOOLOGY 85(4), 387-422
8692016Complete mitochondrial genome reveals a new phylogenetic perspective of brackish water goby Mugilogobius group (Teleostei: Gobiidae: Gobionellinae)Huang, S. P.; I-S. Chen; N. H. Jang-Liaw; K. T. Shao ; M. M. N. YungZoological Science 33(5), 566-574
8702016Revision of the coral-inhabiting genus Conopea (Cirripedia: Archaeobalanidae) with description of two new species of the genera Conopea and Acasta.Kolbasov, G.A.; Chan, B. K. K. ; Molodtsova, T. N.; Achituv, Y.ZOOTAXA 4178(2), 182-208
8712016Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought toleranceTsai, KJ; Lu, MJ ; Yang, KJ; Li, M; Teng, Y; Chen, S; Ku, MS; Li, WH Scientific reports 6, 35076
8722016Seasonal variation in short-term response of coral associated bacterial communities under temperature stressJia-Ho Shiu; Keshavmurthy Shashank; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen; Sen-Lin Tang 
8732016A new species of Microphysogobio (Cypriniformes: Cyprinidae) from Fujian Province, China, and a molecular phylogenetic analysis of Microphysogobio species from southeastern China and TaiwanHuang, S. P.; I-S. Chen; K. T. Shao Proceedings of Biological Society of Washington 129(1), 195-211
8742016A new species of the lizardfish genus Synodus (Aulopiformes: Synodontidae) from the western Pacific OceanHo, H.-C.; J.-P. Chen; K.-T. Shao Zootaxa 4162(1), 134-142
8752016A simplified, economical, and robust light trap for capturing benthic and pelagic zooplanktonChan, B. K. K. ; K.-T. Shao; Y.-T. Shao; Y.-W. ChangJOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY 482, 25-32
8762016Species composition assemblages of ichthyoplankton during summer in the East China SeaLin, H.-Y.; M.-Y. Chiu; Y.-M. Shih; I-S. Chen; M.-A. Lee; K.-T. Shao Continental Shelf Research 126, 64-78
8772016Humic acid composition and characteristics of soil organic matter in relation to the elevation gradient of moso bamboo plantationsWang, H.C.; Chou, C.Y.; Chiou, C.R.; Tian, G; Chiu, C.Y. PLoS ONE 11(9), e0162193
8782016The genetic basis of natural variation in Caenorhabditis elegans telomere length.Cook, D.C.; Zdraljevic, S.; Tanny, R.E.; Seo, B.; Riccardi, D.D.; Noble, L.M.; Rockman, M.V.; Alkema, M.J.; Braendle, C.; Kammenga, J.E.; Wang, J. ; Kruglyak, L.; Félix, M.A.; Lee, J.; Andersen, E.C.GENETICS 204(1):371-83
8792016Diversity and biogeography of the little known deep-sea barnacles of the genus Waikalasma Buckeridge, 1983 (Balanomorpha: Chionelasmatoidea) in the Southwest Pacific, with description of a new speciesChan, B. K. K. ; H. N Chen; P. A. Rodriguez Moreno; L. CorbariJOURNAL OF NATURAL HISTORY 50(47-48), 2961-2984
8802016Evolution of long centromeres in fire ants.Huang, Y.-C.; Lee, C.-C.; Kao, C.-Y.; Chang, N.-C.; Lin, C.-C.; Shoemaker, D.D.; Wang, J. BMC EVOLUTIONARY BIOLOGY 16:189
8812016The complete mitochondrial genome of Histiostoma blomquisti (Acari: Histiostomatidae)Lee, C.-C.; Wang, J. Mitochondrial DNA Part B 1(1), 671-673
8822016DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigasS.-T. Hsiao; S.-C. Chuang; K.-S. Chen; P.-H. Ho; C.-L. Wu; C. A. Chen Scientific Reports 6, 34057
8832016Challenges to the Conservation of Sino-Vietnamese Limestone Karst BiodiversityKuo-Fang Chung 
8842016Changes in size, age, and sex ratio composition of Pacific bluefin tuna (Thunnus orientalis) on the northwestern Pacific Ocean spawning groundsShiao, Jen-Chieh; Lu, Han-Bo; Hsu, Jhen; Wang, Hui-Yu ; Chang, Shui-Kai; Huang, Min-Yu; Ishihara, TaikiICES Journal of Marine Science 74(1), 204-214
8852016Population dynamics of a high-latitude coral Alveopora japonica Eguchi from Jeju Island, off the southern coast of KoreaChristophe Vieira; Shashank Keshavmurthy; Se-Jong Ju; Kiseong Hyeong; Inah Seo; Chang-Keun Kang; Hyun-Ki Hong; Chaolun Allen Chen ; Kwang-Sik ChoiMARINE AND FRESHWATER RESEARCH 67, 594-604
8862016Thalassotalea euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescensShih-Yi Sheu; Li-Ping Liu; Sen-Lin Tang ; Wen-Ming ChenInternational Journal of Systematic and Evolutionary Microbiology
8872016DNA barcode identification of fish products in Taiwan: Government-commissioned authentication casesChang, C.H.; H. Y. Lin; Q. Ren; Y. S. Lin; K. T. Shao Food Control 66, 38-43
8882016Collecting and processing thoracican, acrothoracican, and rhizocephalan cirripedesChan, B. K. K. ; G. A. Kolbasov; J. T. HoegJOURNAL OF CRUSTACEAN BIOLOGY 36(5), 752-760
8892016Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environmentFu-Chun Yang; Yi-Lung Chen; Sen-Lin Tang ; Chang-Ping Yu; Po-Hsiang Wang; Wael Ismail; Chia-Hsiang Wang; Jiun-Yan Ding; Cheng-Yu Yang; Chia-Ying Yang; Yin-Ru Chiang ISME Journal 10, 1967-1983
8902016The historical origins and evolution of paleotropical intercontinental disjunction in Elatostema (Urticaceae)Yu-Hsin Tseng; Kuo-Fang Chung ; Alex Monro; Yi-Gang Wei; Jer-Ming Hu
8912016Molecular phylogenetics, historical biogeography, and diversification of Berberis s.l. (Berberidaceae).Chih-Chieh Yu; Kuo-Fang Chung 
8922016Using RAD-seq to infer phylogeny of a rapid radiation of a subalpine everygreen shrub (Berberis sect. Wallichianae, Berberidaeae) in TaiwanYu-Lan Huang; Kuo-Fang Chung ; Kai-Yi Chen; Chih-Chieh Yu
8932016Molecular phylogenetics and biogeography of Asian Begonia, with an emphasis on the continental speciesWai-Chao Leong; Ching-I Peng; Yan Liu; Rosario Rubite; Ruth Kiew; Mark Hughes; Rimi Repin; Kuo-Fang Chung 
8942016Phylogeography of Primulina bipinnatifida (Gesneriaceae) species complex – insights into limestone karst plant diversification and implications for its classificationWei-Bin Xu; An-Ya Chu; Yi-Hsuan Hsu; Kuo-Fang Chung 
8952016Three new species of Begonia endemic to the Puerto Princesa Subterranean River National Park, PalawanRosario Rubite; Mark Hughes; Ching-I Peng; Patrick Blanc; Kuo-Fang Chung ; Grecebio Alejandro
8962016The endocrine responses to long-term acoustical stress in milkfish (Chanos chanos)K. T. Shao 
8972016How do coral associated invertebrates starting their life in their coral hosts? An example from coral associated barnaclesLiu, J. C. W.; J. T. Høeg; B. K. K. Chan 
8982016Remote sensing-derived measures of habitat heterogeneity as an essential biodiversity variableMao-Ning Tuanmu ; Walter Jetz
8992016Biodiversity Monitoring and Reporting System Project in Taiwan(TaiBON)─Marine aspectK. T. Shao 
9002016A simplified biomimetic temperature logger for recording intertidal barnacle body temperaturesChan, Benny K. K. ; Lima, Fernando P.; Williams, Gray A.; Seabra, Rui; Wang, Hui-Yu Limnology and Oceanography: Methods 14(7), 448-455
9012016Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata.Wen-Ming Chen; Li-Ping Liu; Chaolun Allen Chen ; Jih-Terng Wang; Shih-Yi SheuINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66, 4077-4084
9022016Phylogenetic relationships of Darwin’s “Mr. Arthrobalanus”: The burrowing barnacles (Cirripedia: Acrothoracica).Lin, H. C.; G. A. Kolbasov; B. K. K. Chan MOLECULAR PHYLOGENETICS AND EVOLUTION 100, 292-302
9032016Metacommunity structure of tropical cave bats and the implications for roost conservationJoe Chun-Chia Huang; Kendra Phelps; Mao-Ning Tuanmu 
9042016Endolithic bacterial communities and potential functions in the coral Isopora paliferaShan-Hua Yang; Sen-Lin Tang 
9052016太平島海洋生物多樣性與劃設南沙群島為海洋保護區之倡議邵廣昭 
9062016The thermal tolerance of coral-associated bacterial communities acclimated to temperature stress based on seasonal thermal historyJia-Ho Shiu; Keshavmurthy Shashank; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen; Sen-Lin Tang 
9072016Application of Coral Health Index in Management of Marine protected Area: An example in Kenting National Park, TaiwanMing-Jay Ho ; Chaolun Allen Chen
9082016Why paper mulberry is not invasive in remote Oceanic islands?Chung, Kuo-Fang ; Peñailillo, Johany; Olivares, Gabriela; Moncada, Ximena; Payacán, Claudia; Matthews, Peter J.; Seelenfreund, Andrea; Seelenfreund, Daniela
9092016Environmental and biodiversity representativeness of global protected area networkMao-Ning Tuanmu ; Walter Jetz
9102016Cryobanking and Its Barcode Database in Taiwan -- FishesK. T. Shao 
9112016直擊外籍漁船盜獵東沙珊瑚礁資源的惡行鄭明修 
9122016How do coral barnacles start their life in their hosts?Liu, J. C. W.; J. T. Hoeg; B. K.K. Chan Biology Letters 12(6)
9132016Revisiting the plastid phylogenomics of Pinaceae with two complete plastomes of Pseudolarix and Tsuga.Sudianto, E; Wu, CS; Lin, CP; Chaw, SM Genome Biology and Evolution 8(6), 1804-1811
9142016Birth of four chimeric plastid gene clusters in Japanese umbrella pine.Hsu, CY; Wu, CS; Chaw, SM Genome Biology and Evolution 8(6), 1776-1784
915201602.知識饗宴「生於憂患、死於安樂」的生態演化啟示」沈聖峰 
9162016Thermal environment and maternal effects shape egg size in a freshwater fishFeiner, Zachary S.; Wang, Hui-Yu ; Einhouse, Donald W.; Jackson, James. R.; Rutherford, Edward S.; Schelb, Chris; Vandergoot, Christopher S.; Zorn, Troy G.; Höök, Tomas O.Ecosphere 7(5), e01304-e01304
9172016On the morphology of antennular sensory and attachment organs in cypris larvae of the deep-sea vent/seep barnacles, Ashinkailepas and NeoverrucaYorisue, T.; B. K. K. Chan ; R. Kado; H. Watanabe; K. Inoue; S. Kojima; J. T. HøegJOURNAL OF MORPHOLOGY 277(5), 594-602
9182016Comparing abundance, composition and environmental influences on prokaryotic ammonia oxidizers in two subtropical constructed wetlandsLan-Feng Fan; Hsing-Ju Chen; Hwey-Lian Hsieh; Hsing-Juh Lin; Sen-Lin Tang ECOLOGICAL ENGINEERING 90, 336-346
9192016東沙珊瑚黯然,揭穿外籍漁船盜獵的惡行鄭明修 大自然 第131期,頁12-19
9202016Insights into the regulation of C4 leaf development from comparative transcriptomic analysisHuang, CF; Chang, YM; Lin, JJ; Yu, CP; Lin, HH; Liu, WY; Yeh, S; Tu, SL ; Wu, SH ; Ku, MS; Li, WH Current opinion in plant biology 30, 1-10
9212016First discovery of a new species of Newmanella Ross, 1969 (Balanomorpha: Tetraclitidae) in the western Pacific, with a note on the new status of Neonrosella Jones, 2010Chan, B. K. K. ; C. C. CheangZOOTAXA 4098(2), 201-226
9222016Regulatory Differences in Natal Down Development between Altricial Zebra Finch and Precocial ChickenChen, CK; Ng, CS; Wu, SM; Chen, JJ; Cheng, PL; Wu, P; Lu, MY ; Chen, DR; Chuong, CM; Cheng, HC; Ting, CT; Li, WH Molecular biology and evolution 33(8), 2030-2043
9232016構樹DNA記載的南島語族遷徙史鍾國芳 
9242016Why Mahonia? Recircumscribing Berberis s.l. based on molecular and morphological data, with description of two new genera, Alloberberis and MoranthamnusChih-Chieh Yu; Kuo-Fang Chung 
9252016A new species of sponge inhabiting barnacle Bryozobia (Archaeobalanidae, Bryozobiinae) in the West PacificYu, M.-C.; G. A. Kolbasov; B. K. K. Chan ZooKeys 571, 1-20
9262016Biodiversity and Biogeography of Chthamalid Barnacles from the North-Eastern Pacific (Crustacea Cirripedia)Chan, B. K. K. ; H. N. Chen; P. R. Dando; A. J. Southward; E. C. SouthwardPLoS One 11(3), e0149556
9272016Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogasterMei-Ju May Chen; Li-Kai Chen; Yu-Shing Lai; Yu-Yu Lin; Dung-Chi Wu; Yi-An Tung; Kwei-Yan Liu; Hsueh-Tzu Shih; Yi-Jyun Chen; Yan-Liang Lin; Li-Ting Ma; Jian-Long Huang; Po-Chun Wu; Ming-Yi Hong; Fang-Hua Chu; June-Tai Wu; Wen-Hsiung Li ; Chien-Yu ChenBMC Genomics 17, 220
9282016Improving 3'-hydroxygenistein production in recombinant Pichia pastoris by a periodic hydrogen peroxide-shocking strategyWang, TY ; Tsai, YH; Yu, IZ; Chang, TSJournal of Microbiology and Biotechnology 26(3), 498-502
9292016Bacterial Community Associated with Organs of Shallow Hydrothermal Vent Crab Xenograpsus testudinatus near Kuishan Island, TaiwanShan-Hua Yang; Pei-Wen Chiang; Tin-Chang Hsu; Shuh-Ji Kao; Sen-Lin Tang PLoS One 11(3), e0150597
9302016Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral HostJiun-Yan Ding; Jia-Ho Shiu; Wen-Ming Chen; Yin-Ru Chiang ; Sen-Lin Tang FRONTIERS IN MICROBIOLOGY 7, 251
9312016Wall of orange cup coral, Tubastraea coccinea, at the inlet breakwaters of a nuclear power plant, southern TaiwanM.-J. Ho; C.-M. Hsu; C. A. Chen Marine Biodiversity 47, 163-164
9322016Seasonal and daily climate variation have opposite effects on species elevational range sizeChan, W.-P.; I-C. Chen; R. K. Colwell; W.-C. Liu ; C.-y. Huang; S.-F. Shen SCIENCE 351(6280), 1437-1439
9332016Potential impacts of climate change on biotic homogenizationMao-Ning Tuanmu ; Mario R. Moura; Walter Jetz
9342016Strong Ion Regulatory Abilities Enable the Crab Xenograpsus testudinatus to Inhabit Highly Acidified Marine Vent SystemsHu, Marian Y.; Guh, Ying-Jey; Shao, Yi-Ta; Kuan, Pou-Long; Chen, Guan-Lin; Lee, Jay-Ron; Jeng, Ming-Shiou ; Tseng, Yung-Che Frontiers in Physiology 7, 14
9352016藏在構樹DNA中的南島語族遷徙史鍾國芳 科學人, 168, 80-85
9362016Seasonality and lunar periodicity in sexual reproduction of the coral-killing sponge, Terpios hoshinotaYoko Nozawa ; Yu-sin Huang; Euichi HiroseCORAL REEFS 35(3), 1071–1081
9372016Conservation of reef corals in the South China Sea based on species and evolutionary diversityD. Huang; B. W. Hoeksema; A. Yang Amri; P. O. Ang; C. A. Chen ; H. Huang; D. J. W. Lane; W. Y. Licuanan; Ouk Vibol; S. T. Vo; T. Yeemin; L. M. ChouBIOLOGICAL CONSERVATION 25(2), 331-344
9382016Community structure of macrobiota and environmental parameters in shallow water hydrothermal vents off Kueishan Island, TaiwanChan, B. K. K. ; T.-W. Wang; P.-C. Chen; C.-W. Lin; T.-Y. Chan; L. M. TsangPLoS One 11(2), e0148675
9392016Spatial patterns and environmental settings of non-reefal coral communities across the Tropics of Cancer in the Penghu Archipelago (Pescadores), TaiwanH. J. Hsieh; C. K-C. Wen; Y.-C. Huang; K.-S. Chen; C.-F. Dai; C. A. Chen ZOOLOGICAL STUDIES 55, 45
9402016Distribution of Endozoicomonas communities in stony corals reveals high diversity, geographic variation and temporal transitionJia-Ho Shiu; Keshavmurthy Shashank; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Hernyi Justin Hsieh; Chaolun Allen Chen; Sen-Lin Tang 
9412016Endolithic bacterial communities in the coral Isopora paliferaShan-Hua Yang; Tuan Meng Lee; Chang-Rung Huang; Ching-Hung Tseng; Pei-Wen Chiang; Chung-Pin Chen; Hsing-Ju Chen; Sen-Lin Tang 
9422016巨量資料對氣候變遷威脅下之生物多樣性保育所能發揮的功能端木茂甯 
9432016海洋生態殺手-海漂垃圾鄭明修 大自然雜誌 130
9442016Forms and distribution of phosphorus in a placic podzolic toposequence in a subtropical subalpine forest, Taiwan.Jien, S.H.; Baillie, I; Hu, C.C.; Chen, T.H.; Iizuka, Y.; Chiu, C.Y. Catena 140, 145-154
9452016Elevation gradient of soil bacterial communities in bamboo plantations.Lin, Y.T.; Chiu, C.Y. Botanical Studies 57, 8
9462016Fish otolith assemblages from Recent NE Atlantic sea bottoms: A comparative study of palaeoecologyLin, Chien-Hsiang ; Girone, A.; Nolf, D.PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY 446, 98-107
9472016Panda habitat transitionAndres Viña; Mao-Ning Tuanmu ; Jianguo LiuPandas and People: Coupling Human and Natural Systems for Sustainability (Oxford, UK : Oxford University Press)
9482016Pandas-people coexistence and competitionVanessa Hull; Jindong Zhang; Wei Liu; Jinyan Huang; Shiqiang Zhou; Scott Bearer; Weihua Xu; Mao-Ning Tuanmu ; Andrés Viña; Hemin Zhang; Zhiyun Ouyang; Jianguo LiuPandas and People: Coupling Human and Natural Systems for Sustainability (Oxford, UK : Oxford University Press)
9492016Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernationWeng, FCH.; Yang, YJ.; Wang, D. BMC GENOMICS 17, 1024
9502016Absence of winter and spring monsoon changes water level and rapidly shifts metabolism in a subtropical lakeJeng-Wei Tsai; Timothy K. Kratz; James A. Rusak; Wan-Yu Shih; Wen-Cheng Liu; Sen-Lin Tang ; Chih-Yu Chiu Inland Waters 6(3), 436-448
9512016The genomic basis of parasitism in the Strongyloides clade of nematodes.Hunt, VL; Tsai, IJ ; Coghlan, A; Reid, AJ; Holroyd, N; Foth, BJ; Tracey, A; Cotton, JA; Stanley, EJ; Beasley, H; Bennett, HM; Brooks, K; Harsha, B; Kajitani, R; Kulkarni, A; Harbecke, D; Nagayasu, E; Nichol, S; Ogura, Y; Quail, MA; Randle, N; Xia, D; Brattig, NW; Soblik, H; Ribeiro, DM; Sanchez-Flores, A; Hayashi, T; Itoh, T; Denver, DR; Grant, W; Stoltzfus, JD; Lok, JB; Murayama, H; Wastling, J; Streit, A; Kikuchi, T; Viney, M; Berriman, MNature genetics 48(3), 299-307
9522016Invasion of moso bamboo into a Japanese cedar plantation affects the chemical composition and humification of soil organic matter.Wang, H.C.; Tian, G.; Chiu, C.Y. Scientific Reports 6, 32211
9532016Incipient ferralization and weathering indices along a soil chronosequence in TaiwanJien, S.H.; Baillie, I; Huang, W.S.; Chen, Y.Y.; Chiu, C.Y. European Journal of Soil Science 67, 583-596
9542016Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation.Safran, RJ; Scordato, ES; Wilkins, MR; Hubbard, JK; Jenkins, BR; Albrecht, T; Flaxman, SM; Karaardic, H; Vortman, Y; Lotem, A; Nosil, P; Pap, P; Shen, SF ; Chan, SF; Parchman, TL; Kane, NCMolecular ecology 25(16), 3865-3883
9552016Scaling up the diversity-resilience relationship with trait databases and remote sensing data: the recovery of productivity after wildfireMarko J. Spasojevic; Christie A. Bahlai; Bethany A. Bradley; Bradley J. Butterfield; Mao-Ning Tuanmu ; Seeta Sistla; Ruscena Wiederholt; Katharine N. SudingGLOBAL CHANGE BIOLOGY 22(4), 1421-1432
9562016Developing informative microsatellite makers for non-model species using reference mapping against a model species’ genomeHung, C.-M. ; A.-Y. Yu; Y.-T. Lai; P.-J. L. ShanerScientific Reports 6, 23087
9572016Effects of payments for ecosystem services on wildlife habitat recoveryMao-Ning Tuanmu ; Andres Viña; Wu Yang; Xiaodong Chen; Ashton M. Shortridge; Jianguo LiuCONSERVATION BIOLOGY 30(4), 827-835
9582016Factors influencing removal of sewage nitrogen through denitrification in mangrove soils.Shiau, Y.J.; Dham, V.; Tian, G.; Chiu, C.Y. Wetlands 36, 621-630
9592016DNA barcodes of the native ray-finned fishes in TaiwanChang, C. H.; K. T. Shao ; H. Y. Lin; Y. C. Chiu; M. Y. Lee; S. H. Liu; P. L. LinMolecular Ecology Resources
9602016MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles.Shaw, GT; Pao, YY; Wang, D BMC bioinformatics 17(1), 488
9612016Matching loci surveyed to questions asked in phylogeographyHung, C.-M. ; S. V. Drovetski; R. M. ZinkPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 283(1826), 20152340
9622016The genome of Onchocerca volvulus, agent of river blindness.Cotton, JA; Bennuru, S; Grote, A; Harsha, B; Tracey, A; Beech, R; Doyle, SR; Dunn, M; Hotopp, JC; Holroyd, N; Kikuchi, T; Lambert, O; Mhashilkar, A; Mutowo, P; Nursimulu, N; Ribeiro, JM; Rogers, MB; Stanley, E; Swapna, LS; Tsai, IJ ; Unnasch, TR; Voronin, D; Parkinson, J; Nutman, TB; Ghedin, E; Berriman, M; Lustigman, SNature Microbiology 2, 16216
9632016Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird’s-Nest Fern.Wu, GL; Kuo, TH; Tsay, TT; Tsai, IJ ; Chen, PJPloS one 11(7), e0158663
9642016HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni.Suttiprapa, S; Rinaldi, G; Tsai, IJ ; Mann, VH; Dubrovsky, L; Yan, HB; Holroyd, N; Huckvale, T; Durrant, C; Protasio, AV; Pushkarsky, T; Iordanskiy, S; Berriman, M; Bukrinsky, MI; Brindley, PJPLoS pathogens 12(10), e1005931
9652016Present population and habitat status of potentially threatened Asian horseshoe crabs Tachypleus tridentatus and Carcinoscorpius rotundicauda in Hong Kong: a proposal for marine protected areasKwan, BKY; Hsieh, HL ; Cheung, SG; Shin, PKSBiodiversity and Conservation 25, 673-692
9662016Intermediate culture of juvenile horseshoe crab (Tachypleus tridentatus) mixed with juvenile spotted Babylon (Babylonia areolata) for restocking horseshoe crab populationsChen, CP ; Chen, RF; Chen, PH; Liu, HJ; Hsieh, HL AACL Bioflux 9(3), 623-633
9672016Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster.Vicente, CS; Nascimento, FX; Barbosa, P; Ke, HM; Tsai, IJ ; Hirao, T; Cock, PJ; Kikuchi, T; Hasegawa, K; Mota, MMicrobial ecology 72(3), 669-681
9682016The genome of Strongyloides spp. gives insights into protein families with a putative role in nematode parasitism.Hunt, VL; Tsai, IJ ; Selkirk, ME; Viney, MParasitology , 1-16
9692016Positional distribution of transcription factor binding sites in Arabidopsis thaliana.Yu, CP; Lin, JJ; Li, WH Scientific reports 6, 25164
9702016The effect of altitudinal gradient on soil microbial community activity and structure in moso bamboo plantations.Chang, E.H; Chen, T.H.; Tian, G; Chiu, C.Y. Applied Soil Ecology 98, 213-220
9712016Bayesian hierarchical ANOVA model of stochastic seasonality for Diodon Holocanthus in northern TaiwanChen, H.; Shao, K.T. ; Kishino, H.Journal of Marine Science and Technology-Taiwan 24(2), 303-310
9722016Mucus sugar content shapes the bacterial community structure in thermally stressed Acropora muricataSonny T.M. Lee; Simon K. Davy; Sen-Lin Tang ; Paul S KenchFrontiers in Microbiology 7, 371
9732016The complete mitochondrial genome of the fire coral-inhabiting barnacle Megabalanus ajax (Sessilia: Balanidae): gene rearrangements and atypical gene contentShen, X.; K. H. Chu; B. K. K. Chan ; L. M. TsangMitochondrial DNA 27(2), 1173-1174
9742016Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancerChing-Hung Tseng; Jaw-Town Lin; Hsiu-Jon Ho; Zi-Lun Lai; Chang-Bi Wang; Sen-Lin Tang ; Chun-Ying WuScientific Reports 6, 20701
9752016Prevalence of potential nitrogen-fixing, green sulphur bacteria in the skeleton of reef-building coral Isopora paliferaYang, Shan-Hua; Lee, Sonny; Huang, Chang-Rung; Tseng, Ching-Hung; Chiang, Pei-Wen; Chen, Chung-Pin; Chen, Hsing-Ju; Tang, Sen-Lin LIMNOLOGY AND OCEANOGRAPHY 61(3), 1078-1086
9762016Bacterial Communities of Three Saline Meromictic Lakes in Central AsiaBayanmunkh Baatar; Pei-Wen Chiang; Denis Yu Rogozin; Yu-Ting Wu; Ching-Hung Tseng; Cheng-Yu Yang; Hsiu-Hui Chiu; Bolormaa Oyuntsetseg; Andrey G. Degermendzhy; Sen-Lin Tang PLOS ONE 11(3), e0150847
9772015Coral–Associated Microbial Communities Seasonally Acclimate Temperature Stress in Acropora muricata in TaiwanJia-Ho Shiu; Pei-Wen Chiang; Hsing-Ju Chen; Shueh-Ping Lou; Ching-Hung Tseng; Keshavmurthy Shashank; Allen C. Chen; Sen-Lin Tang 
9782015Prevalence of potential nitrogen-fixing, green sulphur bacteria in the skeleton of reef-building coral Isopora paliferaShan-Hua Yang; Sen-Lin Tang 
9792015Endolithic microbial communities in the coral Isopora paliferaShan-Hua Yang; Sen-Lin Tang 
9802015台灣常見經濟性水產動植物圖鑑邵廣昭 ; 張睿昇; 鄭明修 ; 子萱; 邱郁文; 何瓊玟; 陳天任; 何平合; 趙世民; 莊守正; 林沛立台北
9812015Crustacean funa of Taiwan: Brachyuran crabs. volume II-OcypodoidaeShin, H.-T.; B. K. K. Chan ; S. J. Teng; K. J. H. wongTaichung, Taiwan
9822015Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice YieldSu-Ying Yeh; Hau-Wen Chen; Chun-Yeung Ng; Chu-Yin Lin; Tung-Hai Tseng; Wen-Hsiung Li ; Maurice S. B. KuRice 8(1), 36
9832015Annotated checklist of eels (orders Anguilliformes and Saccopharyngiformes) from TaiwanHo, H. C.; Davis G. Smith; John E. Mccosker; Y. Hibino; K. H. Loh; K. A. Tighe; K. T. Shao ZOOTAXA 4060, 140-189
9842015Long-term monitoring dataset of fish assemblages impinged at nuclear power plants in northern TaiwanChen, H. Y.; Y. C. Liao; C. Y. Chen; J. I. Tsai; L. S. Chen; K. T. Shao Scientific Data 2, 150071
9852015Saurenchelys gigas sp. nov., a new nettastomatid eel (Teleostei, Anguilliformes, Nettastomatidae) from the western central Pacific.Lin, J.; D. G. Smith; K. T. Shao ; H.C. HoZootaxa 4060(1), 121-130
9862015Three new species of Primulina (Gesneriaceae) from limestone karsts of China based on morphological and molecular evidenceGuo, J; Pan, B; Liu, J; Xu, WB; Chung, KF BOTANICAL STUDIES 56, e34
9872015濕地植物保育新思維:由貢寮水梯田的植物多樣性談其保育價值的生態學基礎謝佳倫; 方韻如; 謝傳鎧; 鍾國芳 臺大實驗林研究報告 第29卷第4期,頁279-291
9882015A new species of moray eel (Anguilliformes: Muraenidae) from Taiwan, with comments on related elongate unpatterened speciesLoh, K.H.; Shao, K.T. ; Ho, H.C.; Lim, P.E.; Chen, H.M.ZOOTAXA 4060(1), 30-40
9892015Metabolic characteristics of dominant microbes and key rare species from an acidic hot spring in Taiwan revealed by metagenomicsKuei-Han Lin; Ben-Yang Liao; Hao-Wei Chang; Shiao-Wei Huang; Ting-Yan Chang; Cheng-Yu Yang; Yu-Bin Wang; Yu-Teh Kirk Lin; Yu-Wei Wu; Sen-Lin Tang ; Hon-Tsen YuBMC GENOMICS 16(1), 1029
9902015A unique duplication of gene cluster (S2–C–Y) in Epopella plicata (Crustacea) mitochondrial genome and phylogeny within CirripediaShen, X.; L. M. Tsang; K. H. Chu; B. K. K. Chan Mitochondrial DNA 28(2), 285-287
9912015Introduction to the systematics and biodiversity of eels (orders Anguilliformes and Saccopharyngiformes) of Taiwan.Ho, H.C.; McCosker, J.E.; Smith, D.G.; Shao, K.T. ZOOTAXA 1-10
9922015Note on the congrid eel genus Parabathymyrus from the western Pacific Ocean, with description of a new species (Pisces: Anguilliformes: Congridae)Ho, H.C.; Smith, D.G.; Shao, K.T. ZOOTAXA 4060, 131-139
9932015Successive shifts in the microbial community of the surface mucus layer and tissues of the coral Acropora muricata under thermal stressSonny Lee; Simon Davy; Sen-Lin Tang ; Tung-Yung Fan; Paul KenchFEMS MICROBIOLOGY ECOLOGY 91(12), fiv142
9942015魚類的伊甸園─核三進水口海洋保護區邵廣昭 ; 陳靜怡; 蔡正一台北
9952015Seasonality and lunar periodicity in the sexual reproduction of the coral-killing sponge, Terpios hoshinotaYoko Nozawa ; Yu-Sin Huang; Euichi Hirose
9962015Using multi-timescale methods and satellite derived land surface temperature for the interpolation of daily maximum air temperature in OregonBenoit Parmentier; Brian J. McGill; Adam M. Wilson; James Regetz; Walter Jetz; Robert Guralnick; Mao-Ning Tuanmu ; Mark SchildhauerINTERNATIONAL JOURNAL OF CLIMATOLOGY 35(13), 3862-3878
9972015A global, remote sensing-based characterization of terrestrial habitat heterogeneity for biodiversity and ecosystem modelingMao-Ning Tuanmu ; Walter JetzGLOBAL ECOLOGY AND BIOGEOGRAPHY 24(11), 1329-1339
9982015A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry.Chang, CS; Liu, HL; Moncada, X; Seelenfreund, A; Seelenfreund, D; Chung, KF PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 112(44), 13537-42
9992015多學科的觀點。海鮮銀行和海洋生物保育的雙贏策略鄭明修 
10002015沉睡中的時空膠囊-巧遇東沙環礁古沈船鄭明修 大自然雜誌 129