| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 1 | 2012 | Transcriptomic studies of rice cultivars with contrasting abiotic stress tolerance. | Lin, C. -C; Chou, S. -J; Yang, K. -C; Li, K. -C; Shih, M. -C. | | | | |
| 2 | 2012 | Transcriptomic studies of rice cultivars with contrasting abiotic stress tolerance. | Lin, C. -C; Chou, S. -J; Yang, K. -C; Li, K. -C; Shih, M. -C. | | | | |
| 3 | 2011 | Transcriptomic studies of rice cultivars with contrasting abiotic stress tolerance | Lin, C. -C; Shih, M. -C. | | | | |
| 4 | 2010 | Transcriptional regulatory pathways associated with hypoxia responses in Arabidopsis | Hsu, F. -C; Chou, M. -Y; Peng, H. -P; Chou, S. -J; Shih, M. -C. | | | | |
| 5 | 2019 | Toward precision breeding of Phalaenopsis orchids | Ming-Che Shih | | | | |
| 6 | 2019 | The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence | Hsing-Yi Cho; Mei-Yeh Jade Lu; Ming-Che Shih | | | | |
| 7 | 2012 | The hypoxia responsive transcription factor WRKY22 mediates hypoxic responses and innate immunity in Arabidopsis. | Hsu, F-C; Chen, W. -C; Chou, M. -Y; Peng, H. -P; Chou, S. -J; Shih, M. -C. | | | | |
| 8 | 2010 | The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis. | Yang, C. -Y; Hsu, F. -C; Li, J. -P; Wang, N. N; Shih, M. -C. | | | | |
| 9 | 2010 | The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis | Yang, C. -Y; Hsu, F. -C; Li, J. -P; Wang, N. N; Shih, M. -C. | | | | |
| 10 | 2013 | Submergence-acclimatized immunity mediated by WRKY22 in Arabidopsis | F.-C. Hsu; M.-Y. Chou; H.-P. Peng; S.-J. Chou; M.-C. Shih | | | | |
| 11 | 2014 | Submergence confers immunity mediated by WRKY22 in Arabidopsis | Hsu, FC; Chou, MY; Chou, SJ; Li, YR; Peng, HP; Shih, MC | | | | |
| 12 | 2019 | Regulation of Translation Dynamics in Arabidopsis under Submergence | Hsing-Yi Cho; Mei-Yi Chou; Ming-Che Shih | | | | |
| 13 | 2013 | Molecular investigation into the early anoxia-reoxygenation events in Arabidopsis | Tsai, K.-J.; Chou, S.-J.; Shih, M.-C. | | | | |
| 14 | 2013 | Hypoxia tolerance, systemic signaling and ethylene | Hsu, F. -C.; Chou, M. -Y.; Peng, H. -P.; Chou, S. -J.; Shih, M. -C. | | | | |
| 15 | 2014 | Genomic and transcriptomic analyses unravel effector repertoire of Colletotrichum acutatum during the infection on Capsicum annuum | Chuang, S.-C.; Lee, M.-H.; Shih, M.-C. | | | | |
| 16 | 2017 | Genomic Analysis of the Orchid Phalaenopsis aphrodite | Shih, M.-C. | | | | |
| 17 | 2009 | Functional genomics of biomass conversion | Shih, Ming-Che | | | | |
| 18 | 2019 | Functional characterization of HYPOXIA RESPONSIVE MEDIATOR 1 under low oxygen stress in Arabidopsis | Kuen-Jin Tsai; Ming-Che Shih | | | | |
| 19 | 2017 | Exploring Pseudomonas taiwanese Genome for Biocontrol Agents Against Rice Bacterial Blight Disease | Shih, M.-C. | | | | |
| 20 | 2017 | Ethylene-regulated glutamate dehydrogenase modulates central metabolism to confer hypoxia tolerance in Arabidopsis. | Tsai, K.-J.; Shih, M.-C. | | | | |
| 21 | 2011 | Differential Expression of Transcription Factors of Phalaenopsis aphrodite during Reproductive Development | Su, C. -L; Chen, W. -C; Yeh, M. -L; Kee, T. H; Chen, C. -Y; Chao, Y. -T; Chang, Y. -C; Shih, M. -C. | | | | |
| 22 | 2011 | De novo Assembly of Expressed Transcripts and Construction of a Transcriptome Database of Phalaenopsis aphrodite | Su, C. -L; Chao, Y. -T; Chang, Y. -C; Chen, W. -C; Chen, C. -Y; Lee, A. -Y; Kee, T. H; Shih, M. -C. | | | | |
| 23 | 2017 | Comparative Genomics of the Rice Blight Disease Pathogen, Xanthomonas oryzae pv. oryzae XF89b and XM9, a New Insight of Virulence Factors | Chien, C.-C.; Chou, M.-Y.; Chen, C.-W.; Chen, T.-Y.; Shih, M.-C. | | | | |
| 24 | 2013 | Characterization of SnRK1 under submergence. | Cho, H.-Y.; Wen, T.-N.; Peng, H.-P.; Wang, Y.-T.; Shih, M.-C. | | | | |
| 25 | 2019 | A novel gene, AtG-LecRK-I.2, enhances bacterial pathogen resistance through regulation of stomatal immunity | Chih-Cheng Chien; Ming-Che Shih | | | | |
