Results 1-247 of 247 (Search time: 0.002 seconds).
| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link | |
|---|---|---|---|---|---|---|---|
| 1 | 2024 | Mapping geological events and nitrogen fixation evolution onto the timetree of the evolution of nitrogen-fixation genes | Pi, HW; YR Chiang ; WH Li | MOLECULAR BIOLOGY AND EVOLUTION 41(2), msae023 | |||
| 2 | 2023 | C4 leaf development and evolution | Huang, CF; Liu, WY; Yu, CP; Wu, SH ; Ku, MSB; Li, WH | CURRENT OPINION IN PLANT BIOLOGY 76, 102454 | |||
| 3 | 2023 | Chicken HOXC8 and HOXC10 genes may play a role in the altered skull morphology associated with the Crest phenotype | Tsai, DY; Chen, JJ; Su, PC; Liu, IM; Yeh, SH; Chen, CK; Cheng, HC; Chen, CF; Li, WH ; Ng, CS | Journal of experimental zoology. Part B, Molecular and developmental evolution 340(6), 392-402 | |||
| 4 | 2023 | Horizontally Transferred DNA in the Genome of the Fungus Pyricularia oryzae is Associated With Repressive Histone Modifications | Kobayashi, N; Dang, TA; Pham, KTM; Gomez, Luciano LB; Van Vu, B; Izumitsu, K; Shimizu, M; Ikeda, KI; Li, WH ; Nakayashiki, H | Molecular biology and evolution 40(9), msad186 | |||
| 5 | 2023 | Genome analysis of SARS-CoV-2 isolates from a population reveals the rapid selective sweep of a haplotype carrying many pre-existing and new mutations | Bhattacharjee, MJ; Bhattacharya, A; Kashyap, B; Taw, MJ; Li, WH ; Mukherjee, AK; Khan, MR | Virology journal 20(1), 201 | |||
| 6 | 2023 | Lactobacillus plantarum isolated from kefir enhances immune responses and survival of white shrimp (Penaeus vannamei) challenged with Vibrio alginolyticus | Tseng, KC; Huang, HT; Huang, SN; Yang, FY; Li, WH ; Nan, FH; Lin, YJ | Fish & shellfish immunology 135, 108661 | |||
| 7 | 2023 | Rice GA3ox1 modulates pollen starch granule accumulation and pollen wall development | Hsieh, KT; Wu, CC; Lee, SJ; Chen, YH; Shiue, SY; Liao, YC; Liu, SH; Wang, IW; Tseng, CS; Li, WH ; Wang, CS; Chen, LJ | PloS one 18(10), e0292400 | |||
| 8 | 2023 | Simultaneous detection of miRNA and mRNA at the single-cell level in plant tissues | Wu, CC; Hsieh, KT; Yeh, SY; Lu, YT; Chen, LJ; Ku, MSB; Li, WH | Plant biotechnology journal 21(1), 136-149 | |||
| 9 | 2022 | Origin and Evolution of Nitrogen Fixation in Prokaryotes | Pi, HW; Lin, JJ; Chen, CA; Wang, PH; Chiang, YR ; Huang, CC; Young, CC; Li, WH | Molecular biology and evolution 39(9), msac181 | |||
| 10 | 2022 | Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cells | Liu, Wen-Yu; Yu, Chun-Ping; Chang, Chao-Kang; Chen, Hsiang-June; Li, Meng-Yun; Chen, Yi-Hua; Shiu, Shin-Han; Ku, Maurice S. B.; Tu, Shih-Long ; Lu, Mei-Yeh Jade ; Li, Wen-Hsiung | Proceedings of the National Academy of Sciences of the United States of America 119(35), e2208795119 | |||
| 11 | 2022 | Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yield | Yeh, Su-Ying; Lin, Hsin-Hung; Chang, Yao-Ming ; Chang, Yu-Lun; Chang, Chao-Kang; Huang, Yi-Cin; Ho, Yi-Wen; Lin, Chu-Yin; Zheng, Jun-Ze; Jane, Wann-Neng ; Ng, Chun-Yeung; Lu, Mei-Yeh ; Lai, I-Ling; To, Kin-Ying ; Li, Wen-Hsiung ; Ku, Maurice S B | Plant physiology 188(1), 442-459 | |||
| 12 | 2022 | Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks | Ng, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason | Genome Biology and Evolution 14(6), evac083 | |||
| 13 | 2022 | Second-generation bioethanol production from phytomass after phytoremediation using recombinant bacteria-yeast co-culture | Tusher, TR; Chang, JJ; Saunivalu, MI; Wakasa, S; Li, WH ; Huang, CC; Inoue, C; Chien, MF | Fuel 326, 124975-124975 | |||
| 14 | 2022 | Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease | Lo, KL; Chen, YN; Chiang, MY; Chen, MC; Panibe, JP; Chiu, CC; Liu, LW; Chen, LJ; Chen, CW; Li, WH ; Wang, CS | Rice(New York, N.Y.) 15, 2 | |||
| 15 | 2022 | Identifying mutations in sd1, Pi54 and Pi-ta, and positively selected genes of TN1, the first semidwarf rice in Green Revolution | Panibe, JP; Wang, L; Lee, YC; Wang, CS; Li, WH | Botanical studies 63(1), 9 | |||
| 16 | 2022 | Safety Assessment of 3S, 3'S Astaxanthin Derived from Metabolically Engineered K. marxianus | Samuel, SY; Wang, HD; Huang, MY; Cheng, YS; Chen, JR; Li, WH ; Chang, JJ | Antioxidants 11(11), 2288 | |||
| 17 | 2021 | Adventures of a Mathematician in Evolutionary Biology | Li, WH | Genome Biology and Evolution 13(3), evab012 | |||
| 18 | 2021 | Tryptophan plays an important role in yeast's tolerance to isobutanol | Liu, HL; Wang, CH; Chiang, EI; Huang, CC; Li, WH | Biotechnology for biofuels 14, 200 | |||
| 19 | 2021 | Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandra | Huang, Chi-Fa; Liu, Wen-Yu; Lu, Mei-Yeh Jade ; Chen, Yi-Hua; Ku, Maurice S, B; Li, Wen-Hsiung | Molecular Biology and Evolution 38(11), 4715-4731 | |||
| 20 | 2020 | Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth | Liu, WY; Lin, HH; Yu, CP; Chang, CK; Chen, HJ; Lin, JJ; Lu, MY ; Tu, SL; Shiu, SH; Wu, SH ; Ku, MSB; Li, WH | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(35), 21747-21756 | |||
| 21 | 2020 | Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens. | Vu, Trieu-Duc; Iwasaki, Yuki; Shigenobu, Shuji; Maruko, Akiko; Oshima, Kenshiro; Iioka, Erica; Huang, Chao-Li; Abe, Takashi; Tamaki, Satoshi; Lin, Yi-Wen; Chen, Chih-Kuan; Lu, Mei-Yeh ; Hojo, Masaru; Wang, Hao-Ven; Tzeng, Shun-Fen; Huang, Hao-Jen; Kanai, Akio; Gojobori, Takashi; Chiang, Tzen-Yuh; Sun, H. Sunny; Li, Wen-Hsiung ; Okada, Norihiro | PLoS Genetics 16(6), e1008831 | |||
| 22 | 2020 | Constructing a human complex type N-linked glycosylation pathway in Kluyveromyces marxianus | Ming-Hsuan Lee; Tsui-Ling Hsu ; Jinn-Jy Lin; Yu-Ju Lin; Yi-Ying Kao; Jui-Jen Chang; Wen-Hsiung Li | PloS one 15(5), e0233492 | |||
| 23 | 2020 | Constructing a yeast to express the largest cellulosome complex on the cell surface | Anandharaj, M; Lin, YJ; Rani, RP; Nadendla, EK; Ho, MC; Huang, CC; Cheng, JF; Chang, JJ; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 117(5), 2385-2394 | |||
| 24 | 2020 | Genomic Analysis of Mycobacterium tuberculosis Isolates and Construction of a Beijing Lineage Reference Genome | W.-F. Wang; M.-Y. Jade Lu ; T.-J. R. Cheng; Y.-C. Tang; Y.-C. Teng; T.-Y. Hwa; Y.-H. Chen; M.-Y. Li; M.-H. Wu; P.-C. Chuang; R. Jou; C.-H. Wong ; W.-H. Li | Genome Biology and Evolution 12(2), 3890-3905 | |||
| 25 | 2019 | Many human RNA viruses show extraordinarily stringent selective constraints on protein evolution. | Lin, JJ; Bhattacharjee, MJ; Yu, CP; Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 116(38), 19009-19018 | |||
| 26 | 2019 | Characterizing an engineered carotenoid-producing yeast as an anti-stress chassis for building cell factories. | Liu, HL; Chang, JJ; Thia, C; Lin, YJ; Lo, SC; Huang, CC; Li, WH | Microbial cell factories 18(1), 155 | |||
| 27 | 2019 | Large-scale identification and functional analysis of NLR genes in blast resistance in the Tetep rice genome sequence. | Wang, L; Zhao, L; Zhang, X; Zhang, Q; Jia, Y; Wang, G; Li, S; Tian, D; Li, WH ; Yang, S | Proceedings of the National Academy of Sciences of the United States of America 116(37), 18479-18487 | |||
| 28 | 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | |||
| 29 | 2019 | Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. | Chang, YM; Lin, HH; Liu, WY; Yu, CP; Chen, HJ; Wartini, PP; Kao, YY; Wu, YH; Lin, JJ; Lu, MJ ; Tu, SL ; Wu, SH ; Shiu, SH; Ku, MSB; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 116(8), 3091-3099 | |||
| 30 | 2019 | Feather evolution from precocial to altricial birds | Chen, C-K; H-F Chuang; S-M Wu; W-H Li | Zoological Studies 58, e24 | |||
| 31 | 2018 | Identifying a large number of high-yield genes in rice by pedigree analysis, whole-genome sequencing, and CRISPR-Cas9 gene knockout. | Huang, J; Li, J; Zhou, J; Wang, L; Yang, S; Hurst, LD; Li, WH ; Tian, D | Proceedings of the National Academy of Sciences of the United States of America 115(32), E7559-E7567 | |||
| 32 | 2018 | Experimental Evolution of Yeast for High-Temperature Tolerance | Huang, CJ; Lu, MY ; Chang, YW; Li, WH | Molecular biology and evolution 35(8), 1823-1839 | |||
| 33 | 2018 | Engineering the oleaginous red yeast Rhodotorula glutinis for simultaneous β-carotene and cellulase production | Pi, HW; Anandharaj, M; Kao, YY; Lin, YJ; Chang, JJ; Li, WH | Scientific reports 8, 10850 | |||
| 34 | 2018 | Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. | Chang, JJ; Anandharaj, M; Ho, CY; Tsuge, K; Tsai, TY; Ke, HM; Lin, YJ; Ha, Tran, MD; Li, WH ; Huang, CC | Biotechnology for biofuels 11, 157 | |||
| 35 | 2018 | Genome-wide prediction of CRISPR/Cas9 targets in Kluyveromyces marxianus and its application to obtain a stable haploid strain. | Lee, MH; Lin, JJ; Lin, YJ; Chang, JJ; Ke, HM; Fan, WL; Wang, TY ; Li, WH | Scientific reports 8, 7305 | |||
| 36 | 2018 | Constructing a cellulosic yeast host with an efficient cellulase cocktail | Chang, JJ; Lin, YJ; Lay, CH; Thia, C; Wu, YC; Hou, YH; Huang, CC; Li, WH | Biotechnology and bioengineering 115(3), 751-761 | |||
| 37 | 2018 | Multiple Regulatory Modules Are Required for Scale-to-Feather Conversion. | Wu, P; Yan, J; Lai, YC; Ng, CS; Li, A; Jiang, X; Elsey, RM; Widelitz, R; Bajpai, R; Li, WH ; Chuong, CM | Molecular biology and evolution 35(2), 417-430 | |||
| 38 | 2018 | Genetic and Molecular Basis of Feather Diversity in Birds | Ng, CS; Li, WH | Genome biology and evolution 10(10), 2572-2586 | |||
| 39 | 2017 | Metabolic engineering a yeast to produce astaxanthin. | Lin, YJ; Chang, JJ; Lin, HY; Thia, C; Kao, YY; Huang, CC; Li, WH | Bioresource technology 245(Pt A), 899-905 | |||
| 40 | 2017 | The rises and falls of opsin genes in 59 ray-finned fish genomes and their implications for environmental adaptation | Lin, JJ; Wang, FY; Li, WH ; Wang, TY | Scientific reports 7(1), 15568 | |||
| 41 | 2017 | Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves. | Huang, CF; Yu, CP; Wu, YH; Lu, MJ; Tu, SL; Wu, SH; Shiu, SH; Ku, MSB; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 114(33), E6884-E6891 | |||
| 42 | 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | |||
| 43 | 2017 | Exome Sequencing of Oral Squamous Cell Carcinoma Reveals Molecular Subgroups and Novel Therapeutic Opportunities. | Su, SC; Lin, CW; Liu, YF; Fan, WL; Chen, MK; Yu, CP; Yang, WE; Su, CW; Chuang, CY; Li, WH ; Chung, WH; Yang, SF | Theranostics 7(5), 1088-1099 | |||
| 44 | 2017 | Identification and evolutionary analysis of long non-coding RNAs in zebra finch | Chen, CK; Yu, CP; Li, SC; Wu, SM; Lu, MJ; Chen, YH; Chen, DR; Ng, CS; Ting, CT; Li, WH | BMC genomics 18(1), 117 | |||
| 45 | 2016 | Large numbers of vertebrates began rapid population decline in the late 19th century. | Li, H; Xiang-Yu, J; Dai, G; Gu, Z; Ming, C; Yang, Z; Ryder, OA; Li, WH ; Fu, YX; Zhang, YP | Proceedings of the National Academy of Sciences of the United States of America 113(49), 14079-14084 | |||
| 46 | 2016 | Regulatory Divergence among Beta-Keratin Genes during Bird Evolution | Bhattacharjee, MJ; Yu, CP; Lin, JJ; Ng, CS; Wang, TY ; Lin, HH; Li, WH | Molecular biology and evolution 33(11), 2769-2780 | |||
| 47 | 2016 | Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought tolerance | Tsai, KJ; Lu, MJ ; Yang, KJ; Li, M; Teng, Y; Chen, S; Ku, MS; Li, WH | Scientific reports 6, 35076 | |||
| 48 | 2016 | Insights into the regulation of C4 leaf development from comparative transcriptomic analysis | Huang, CF; Chang, YM; Lin, JJ; Yu, CP; Lin, HH; Liu, WY; Yeh, S; Tu, SL ; Wu, SH ; Ku, MS; Li, WH | Current opinion in plant biology 30, 1-10 | |||
| 49 | 2016 | Regulatory Differences in Natal Down Development between Altricial Zebra Finch and Precocial Chicken | Chen, CK; Ng, CS; Wu, SM; Chen, JJ; Cheng, PL; Wu, P; Lu, MY ; Chen, DR; Chuong, CM; Cheng, HC; Ting, CT; Li, WH | Molecular biology and evolution 33(8), 2030-2043 | |||
| 50 | 2016 | Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster | Mei-Ju May Chen; Li-Kai Chen; Yu-Shing Lai; Yu-Yu Lin; Dung-Chi Wu; Yi-An Tung; Kwei-Yan Liu; Hsueh-Tzu Shih; Yi-Jyun Chen; Yan-Liang Lin; Li-Ting Ma; Jian-Long Huang; Po-Chun Wu; Ming-Yi Hong; Fang-Hua Chu; June-Tai Wu; Wen-Hsiung Li ; Chien-Yu Chen | BMC Genomics 17, 220 | |||
| 51 | 2016 | Positional distribution of transcription factor binding sites in Arabidopsis thaliana. | Yu, CP; Lin, JJ; Li, WH | Scientific reports 6, 25164 | |||
| 52 | 2015 | Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield | Su-Ying Yeh; Hau-Wen Chen; Chun-Yeung Ng; Chu-Yin Lin; Tung-Hai Tseng; Wen-Hsiung Li ; Maurice S. B. Ku | Rice 8(1), 36 | |||
| 53 | 2015 | Transcriptomic analyses of regenerating adult feathers in chicken | Chen Siang Ng; Chih-Kuan Chen; Wen-Lang Fan; Ping Wu; Siao-Man Wu; Jiun-Jie Chen; Yu-Ting Lai; Chi-Tang Mao; Mei-Yeh Jade Lu ; Di-Rong Chen; Ze-Shiang Lin; Kai-Jung Yang; Yuan-An Sha; Tsung-Che Tu; Chih-Feng Chen; Cheng-Ming Chuong; Wen-Hsiung Li | BMC Genomics 16, 756 | |||
| 54 | 2015 | Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus | Schaefke, B; Wang, TY ; Wang, CY; Li, WH | Genome Biology and Evolution 7(8), 2245-2257 | |||
| 55 | 2015 | Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast | Jui-Jen Chang; Caroline Thia; Hao-Yeh Lin; Hsien-Lin Liu; Feng-Ju Ho; Jiunn-Tzong Wu; Ming-Che Shih ; Wen-Hsiung Li ; Chieh-Chen Huang | Bioresource Technology 184, 2-8 | |||
| 56 | 2015 | Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors | Chun-Ping Yu; Sean Chun-Chang Chen; Yao-Ming Chang; Wen-Yu Liu; Hsin-Hung Lin; Jinn-Jy Lin; Hsiang June Chen; Yu-Ju Lu; Yi-Hsuan Wu; Mei-Yeh Jade Lu ; Chen-Hua Lu; Arthur Chun-Chieh Shih ; Maurice Sun-Ben Ku; Shin-Han Shiu; Shu-Hsing Wu ; Wen-Hsiung Li | Proceedings of the National Academy of Sciences of the United States of America 112(19), E2477-E2486 | |||
| 57 | 2015 | MicroRNA-Like Small RNAs Prediction in the Development of Antrodia cinnamomea | Lin, YL; Ma, LT; Lee, YR; Lin, SS; Wang, SY; Chang, TT; Shaw, JF; Li, WH ; Chu, FH | PLoS One 10(4), e0123245 | |||
| 58 | 2015 | A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types. | Cheng, F; Liu, C; Lin, CC; Zhao, J; Jia, P; Li, WH ; Zhao, Z | PLoS computational biology 11(9), e1004497 | |||
| 59 | 2015 | Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. | Ling, S; Hu, Z; Yang, Z; Yang, F; Li, Y; Lin, P; Chen, K; Dong, L; Cao, L; Tao, Y; Hao, L; Chen, Q; Gong, Q; Wu, D; Li, W; Zhao, W; Tian, X; Hao, C; Hungate, EA; Catenacci, DV; Hudson, RR; Li, WH ; Lu, X; Wu, CI | Proceedings of the National Academy of Sciences of the United States of America 112(47), E6496-E6505 | |||
| 60 | 2015 | Topographical mapping of alpha- and beta-keratins on developing chicken skin integuments: Functional interaction and evolutionary perspectives. | Wu, P; Ng, CS; Yan, J; Lai, YC; Chen, CK; Lai, YT; Wu, SM; Chen, JJ; Luo, W; Widelitz, RB; Li, WH ; Chuong, CM | Proceedings of the National Academy of Sciences of the United States of America 112(49), E6770-E6779 | |||
| 61 | 2015 | Dynamic association rules for gene expression data analysis. | Chen, SC; Tsai, TH; Chung, CH; Li, WH | BMC genomics 16, 786 | |||
| 62 | 2015 | Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift | Shiao, MS; Chang, JM; Fan, WL; Lu, MJ ; Notredame, C; Fang, S ; Kondo, R; Li, WH | Genome biology and evolution 7(10), 2843-2858 | |||
| 63 | 2014 | The prognostic significance of RUNX2 and miR-10a/10b and their inter-relationship in breast cancer | Chang, CH; Fan, TC; Yu, JC; Liao, GS; Lin, YC; Shih, A ; Li, WH ; Yu, A. | Journal of Translational Medicine 12, 257 | |||
| 64 | 2014 | Functional Evolution of cardiac microRNAs in heart development and functions | Lin, C.C.; Chang, Y.M. ; Pan, C.T.; Chen, C.C. ; Ling, L.; Tsao, K.C.; Yang, R.B.; Li, W.H | MOLECULAR BIOLOGY AND EVOLUTION 31(10), 2722-2734 | |||
| 65 | 2014 | Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development. | Lu, MY ; Fan, WL; Wang, WF; Chen, T; Tang, YC; Chu, FH; Chang, TT; Wang, SY; Li, MY; Chen, YH; Lin, ZS; Yang, KJ; Chen, SM; Teng, YC; Lin, YL; Shaw, JF; Wang, TF ; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 111(44), E4743-E4752 | |||
| 66 | 2014 | Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome. | Cheng, F; Jia, P; Wang, Q; Lin, CC; Li, WH ; Zhao, Z. | Mol Biol Evol. 31, 2156-2169 | |||
| 67 | 2014 | Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms | Ng, CS; Wu, P; Fan, WL; Yan, J; Chen, CK; Lai, YT; Wu, SM; Mao, CT; Chen, JJ; Lu, MY ; Ho, MR; Widelitz, RB; Chen, CF; Chuong, CM; Li, WH | Genome biology and evolution 6(9), 2258-2273 | |||
| 68 | 2014 | Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. | Lin, JJ; Yu, CP; Chang, YM; Chen, SC; Li, WH | BMC genomics 15, 818 | |||
| 69 | 2014 | A thermo- and toxin-tolerant kefir yeast for biorefinery and biofuel production | Chang, JJ; C. Y. Ho; C. T. Mao; N. Barham; Y. R. Huang; F. J. Ho; Y. C. Wu; Y. H. Hou; M. C. Shih; W. H. Li ; C. C. Huang | Applied Energy 132, 465-474 | |||
| 70 | 2014 | The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. | Yang, YT; Lee, DY; Wang, Y; Hu, JM; Li, WH ; Leu, JH; Chang, GD; Ke, HM; Kang, ST; Lin, SS; Kou, GH; Lo, CF | BMC genomics 15, 628 | |||
| 71 | 2013 | Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination | Liu, WY; Chang, YM; Chen, SC; Lu, CH; Wu, YH; Lu, MY; Chen, DR; Shih, AC ; Sheue, CR; Huang, HC; Yu, CP; Lin, HH; Shiu, SH; Ku, M Sun-Ben; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 110(10), 3979-3984 | |||
| 72 | 2013 | Historical Profiling of Maize Duplicate Genes Sheds Light on the Evolution of C4 Photosynthesis in Grasses | Yao-Ming Chang; Chia-Lin Chang; Wen-Hsiung Li ; Arthur Chun-Chieh Shih | Molecular Phylogenetics and Evolution 66(2), 453-462 | |||
| 73 | 2013 | Establishment of the metabolite profile for an Antrodia cinnamomea health food product and investigation of its chemoprevention activity. | Wang, HC; Chu, FH; Chien, SC; Liao, JW; Hsieh, HW; Li, WH ; Lin, CC; Shaw, JF; Kuo, YH; Wang, SY | Journal of agricultural and food chemistry 61(36), 8556-64 | |||
| 74 | 2013 | Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production. | Chang, JJ; Ho, FJ; Ho, CY; Wu, YC; Hou, YH; Huang, CC; Shih, MC; Li, WH | Biotechnology for biofuels 6(1), 19 | |||
| 75 | 2012 | Development of cellulosic ethanol production process via co-culturing of artificial cellulosomal Bacillus and kefir yeast | Ho, CY; Chang, JJ; Lee, SC; Chin, TY; Shih, MC; Li, WH ; Huang, CC | Applied Energy 100, 27-32 | |||
| 76 | 2012 | PGASO: A synthetic biology tool for engineering a cellulolytic yeast | Chang, Jui-Jen; Ho, Cheng-Yu; Ho, Feng-Ju; Tsai, Tsung-Yu; Ke, Huei-Mien; Wang, Christine H-T; Chen, Hsin-Liang; Shih, Ming-Che ; Huang, Chieh-Chen; Li, Wen-Hsiung | Biotechnology for Biofuels 5, 53 | |||
| 77 | 2012 | Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis | Chang, YM; Liu, WY; Shih, AC; Shen, MN; Lu, CH; Lu, MY; Yang, HW; Wang, TY ; Chen, SC; Chen, SM; Li, WH ; Ku, MS | Plant physiology 160(1), 165-177 | |||
| 78 | 2012 | The Chicken Frizzle Feather Is Due to an α-Keratin (KRT75) Mutation That Causes a Defective Rachis | Ng, CS; Wu, P; Foley, J; Foley, A; McDonald, ML; Juan, WT ; Huang, CJ; Lai, YT; Lo, WS; Chen, CF; Leal, SM; Zhang, H; Widelitz, RB; Patel, PI; Li, WH ; Chuong, CM | PLoS genetics 8(7), e1002748 | |||
| 79 | 2012 | Revealing the anti-tumor effect of artificial miRNA p-27-5p on human breast carcinoma cell line T-47D | Tseng, CW; Huang, HC; Shih, AC ; Chang, YY; Hsu, CC; Chang, JY; Li, WH ; Juan, HF | International journal of molecular sciences 13(5), 6352-69 | |||
| 80 | 2012 | A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5 | Chen, H. -L.; Chen, Y. -C.; Lu, M. -Y.; Chang, J. -J.; Wang, H. -T.; Ke, H. -M.; Wang, T. -Y.; Ruan, S. -K.; Wang, T. -Y. ; Hong, K. -Y.; Cho, H. -Y.; Lin, W. -T.; Shih, M. -C. ; Li, W. -H. | Biotechnology for Biofuels 5, 24 | |||
| 81 | 2012 | Evolution of 5′ Untranslated Region Length and Gene Expression Reprogramming in Yeasts | Lin, Z; Li, WH | Molecular biology and evolution 29(1), 81-89 | |||
| 82 | 2012 | Comprehensive analysis of microRNAs in breast cancer. | Chang, HT; Li, SC; Ho, MR; Pan, HW; Ger, LP; Hu, LY; Yu, SY; Li, WH ; Tsai, KW | BMC genomics 13 Suppl 7, S18 | |||
| 83 | 2012 | Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. | Rest, JS; Bullaughey, K; Morris, GP; Li, WH | PloS one 7(2), e32274 | |||
| 84 | 2012 | PSC: protein surface classification. | Tseng, YY; Li, WH | Nucleic acids research 40(Web Server issue), W435-9 | |||
| 85 | 2012 | Classification of protein functional surfaces using structural characteristics. | Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 109(4), 1170-5 | |||
| 86 | 2012 | MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. | Li, SC; Tsai, KW; Pan, HW; Jeng, YM; Ho, MR; Li, WH | BMC systems biology 6 Suppl 2, S14 | |||
| 87 | 2012 | DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes. | Woo, YH; Li, WH | Nature communications 3, 1004 | |||
| 88 | 2012 | Evolutionary conservation of histone modifications in mammals. | Woo, YH; Li, WH | Molecular biology and evolution 29(7), 1757-67 | |||
| 89 | 2012 | Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection. | Shiao, MS; Chang, AY; Liao, BY; Ching, YH; Lu, MY ; Chen, SM; Li, WH | Genome biology and evolution 4(5), 703-712 | |||
| 90 | 2011 | Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses | Wang, TY ; Chen, HL; Lu, MY ; Chen, YC; Sung, HM; Mao, CT; Cho, HY; Ke, HM; Hwa, TY; Ruan, SK; Hung, KY; Chen, CK; Li, JY; Wu, YC; Chen, YH; Chou, SP; Tsai, YW; Chu, TC; Shih, CC ; Li, WH ; Shih, MC | Biotechnology for biofuels 4, 24 | |||
| 91 | 2011 | Signalling pathway for RKIP and Let-7 regulates and predicts metastatic breast cancer. | Yun, J; Frankenberger, CA; Kuo, WL; Boelens, MC; Eves, EM; Cheng, N; Liang, H; Li, WH ; Ishwaran, H; Minn, AJ; Rosner, MR | The EMBO journal 30(21), 4500-14 | |||
| 92 | 2011 | A simple method using Pyrosequencing to identify de novo SNPs in pooled DNA samples. | Lin, YS; Liu, FG; Wang, TY ; Pan, CT; Chang, WT; Li, WH | Nucleic acids research 39(5), e28 | |||
| 93 | 2011 | Expansion of hexose transporter genes was associated with the evolution of aerobic fermentation in yeasts. | Lin, Z; Li, WH | Molecular biology and evolution 28(1), 131-42 | |||
| 94 | 2011 | Genetically distinct coelacanth population off the northern Tanzanian coast. | Nikaido, M; Sasaki, T; Emerson, JJ; Aibara, M; Mzighani, SI; Budeba, YL; Ngatunga, BP; Iwata, M; Abe, Y; Li, WH ; Okada, N | Proceedings of the National Academy of Sciences of the United States of America 108(44), 18009-18013 | |||
| 95 | 2011 | Metabolite Profiles for Antrodia cinnamomea Fruiting Bodies Harvested at Different Culture Ages and from Different Wood Substrates. | Lin, TY; Chen, CY; Chien, SC; Hsiao, WW; Chu, FH; Li, WH ; Lin, CC; Shaw, JF; Wang, SY | Journal of agricultural and food chemistry 59(14), 7626-7635 | |||
| 96 | 2011 | The evolution of aerobic fermentation in Schizosaccharomyces pombe was associated with regulatory reprogramming but not nucleosome reorganization. | Lin, Z; Li, WH | Molecular biology and evolution 28(4), 1407-1413 | |||
| 97 | 2011 | Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes. | Woo, YH; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 108(8), 3306-3311 | |||
| 98 | 2011 | Antroquinonol from ethanolic extract of mycelium of Antrodia cinnamomea protects hepatic cells from ethanol-induced oxidative stress through Nrf-2 activation. | Kumar, KJ; Chu, FH; Hsieh, HW; Liao, JW; Li, WH ; Lin, JC; Shaw, JF; Wang, SY | Journal of ethnopharmacology 136(1), 168-177 | |||
| 99 | 2011 | Evolutionary approach to predicting the binding site residues of a protein from its primary sequence. | Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 108(13), 5313-5318 | |||
| 100 | 2011 | Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. | Hanada, K; Sawada, Y; Kuromori, T; Klausnitzer, R; Saito, K; Toyoda, T; Shinozaki, K; Li, WH ; Hirai, MY | Molecular biology and evolution 28(1):377-382 | |||
| 101 | 2011 | Coordinated histone modifications are associated with gene expression variation within and between species. | Ha, M; Ng, DW; Li, WH ; Chen, ZJ | Genome research 21(4), 590-598 | |||
| 102 | 2011 | The Relationships Among MicroRNA Regulation, Intrinsically Disordered Regions, and Other Indicators of Protein Evolutionary Rate. | Chen, SC; Chuang, TJ; Li, WH | Molecular biology and evolution 28(9), 2513-2520 | |||
| 103 | 2010 | Gene family size conservation is a good indicator of evolutionary rates | Chen, Feng-Chi; Chen, Chueng-Jong; Li, Wen-Hsiung ; Chuang, Trees-Juen | Molecular Biology and Evolution 27(8), 1750-1758 | |||
| 104 | 2010 | Natural selection on cis and trans regulation in yeasts | Emerson, JJ; Hsieh, LC; Sung, HM; Wang, TY ; Huang, CJ; Lu, HH; Lu, MY; Wu, SH ; Li, WH ; Shih, MC | Genome research 20(6), 826-836 | |||
| 105 | 2010 | The genetic basis of evolutionary change in gene expression levels. | Emerson, JJ; Li, WH | Philosophical transactions of the Royal Society of London. Series B, Biological sciences (UK : The Royal Society) | |||
| 106 | 2010 | fPOP: footprinting functional pockets of proteins by comparative spatial patterns. | Tseng, YY; Chen, ZJ; Li, WH | Nucleic acids research 38(Database issue), D288-95 | |||
| 107 | 2010 | Adverse interactions between micro-RNAs and target genes from different species. | Tang, T; Kumar, S; Shen, Y; Lu, J; Wu, ML; Shi, S; Li, WH ; Wu, CI | Proceedings of the National Academy of Sciences of the United States of America 107(29), 12935-12940 | |||
| 108 | 2010 | Phosphorylated and non-phosphorylated serine and threonine residues evolve at different rates in mammals. | Chen, SC; Chen, FC; Li, WH | Molecular biology and evolution 27(11), 2548-2554 | |||
| 109 | 2009 | Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing | Hsieh, L. -C.; Lin, S. -I.; Shih, A C. -C. ; Chen, J. -W.; Lin, W. -Y.; Tseng, C. -Y.; Li, W. -H. ; Chiou, T. -J. | PLANT PHYSIOLOGY 151(4), 2120-2132 | |||
| 110 | 2009 | 02.知識饗宴「遺傳學與分子時鐘」 | 李文雄 | ||||
| 111 | 2009 | Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression | Sung, HM; Wang, TY ; Wang, D ; Huang, YS; Wu, JP; Tsai, HK ; Tzeng, J; Huang, CJ; Lee, YC; Yang, P; Hsu, J; Chang, T; Cho, CY; Weng, LC; Lee, TC; Chang, TH ; Li, WH ; Shih, MC | Molecular biology and evolution 26(11), 2533-2538 | |||
| 112 | 2009 | SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns. | Tseng, YY; Dupree, C; Chen, ZJ; Li, WH | Nucleic acids research 37(Web Server issue), W384-9 | |||
| 113 | 2009 | Lowly expressed human microRNA genes evolve rapidly. | Liang, H; Li, WH | Molecular biology and evolution 26(6), 1195-1198 | |||
| 114 | 2009 | Increasing MicroRNA target prediction confidence by the relative R(2) method. | Wang, H; Li, WH | Journal of theoretical biology 259(4), 793-798 | |||
| 115 | 2009 | A novel puf-A gene predicted from evolutionary analysis is involved in the development of eyes and primordial germ-cells. | Kuo, MW; Wang, SH; Chang, JC; Chang, CH; Huang, LJ; Lin, HH; Yu, AL; Li, WH ; Yu, J | PloS one 4(3), e4980 | |||
| 116 | 2009 | Functional compensation by duplicated genes in mouse. | Liang, H; Li, WH | Trends in genetics : TIG 25(10), 441-2 | |||
| 117 | 2008 | Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast | Chang, Y. W.; Liu, F. G. R.; Yu, N.; Sung, H. M.; Yang, P.; Wang, D. ; Huang, C. J.; Shih, M. C. ; Li, W. H. | Molecular biology and evolution 25(9), 1863-1875 | |||
| 118 | 2008 | Overlapping genes in the human and mouse genomes | Sanna, C. -R.; Li, W. -H. ; Zhang, L. -C. | BMC Genomics 9, 169 | |||
| 119 | 2008 | 01.故院長講座. 王世杰院長講座「從遺傳學看人類演化」 | 李文雄 | ||||
| 120 | 2008 | Discovering gapped binding sites of yeast transcription factors | Chen, CY; Tsai, HK ; Hsu, CM; Chen, MJ; Hung, HG; Huang, GT; Li, W. -H. | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(7), 2527-2532 | |||
| 121 | 2008 | Identifying gene regulatory modules of heat shock response in yeast | Wu, W. -S.; Li, W -H. | BMC Genomics 9, 439 | |||
| 122 | 2008 | Systematic identification of yeast cell cycle transcription factors using multiple data sources | Wu, WS; Li, WH | BMC Bioinformatics 9(1), 522 | |||
| 123 | 2008 | Prediction of human miRNAs using tissue-selective motifs in 3′ UTRs | Chang, Y. -M.; Juan, H. -F.; Lee, T. -Y.; Chang, Y. -Y.; Yeh, Y. -M.; Li, W. -H. ; Shih, A. C. -C. | Proceedings of the National Academy of Sciences of the United States of America 105(44), 17061-17066 | |||
| 124 | 2007 | MYBS: A comprehensive web server for mining transcription factor binding sites in yeast | Tsai, H. K. ; Chou, M. Y.; Shih, C. H.; Huang, Grace T. W.; Chang, T. H. ; Li, W. H. | Nucleic Acids Research 35(suppl_2), W221-W226 | |||
| 125 | 2007 | Mathematical Properties of Some Measures of Evolutionary Distance | Tzeng, Yun-Huei; Li, Wen-Hsiung ; Chuang, Trees-Juen | Journal of Theoretical Biology 245(4), 790-792 | |||
| 126 | 2007 | Human-specific insertions and deletions inferred from mammalian genome sequences | Chen, F. C.; Chen, C. J.; Li, W. H. ; Chuang, T. J. | Genome Research 17(1), 16-22 | |||
| 127 | 2007 | MicroRNA regulation of human protein-protein interaction network. | Liang, H.; Li, W. -H. | RNA 13(9), 1402-1408 | |||
| 128 | 2007 | Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data | Wu, W-S; Li, W. -H. ; Chen, B. -S. | BMC Bioinformatics 8, 188 | |||
| 129 | 2007 | Proportion of solvent-exposed amino acids in a protein and rate of protein evolution | Lin, Y. -S.; Hsu, Wei-Lun; Hwang, J. -K.; Li, W. -H. | Mol. Biol. Evol. 24(4), 1005-1011 | |||
| 130 | 2007 | Gene essentiality, gene duplicability and protein connectivity in human and mouse | Liang, H.; Li, W. -H. | Trends Genet. 23: 375-378 | |||
| 131 | 2007 | Human polymorphism at microRNAs and microRNA target sites | Saunders, M. A.; Liang, H.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 104(9), 3300-3305 | |||
| 132 | 2007 | Features and trend of loss of promoter-associated CpG islands in the human and mouse Genomes | Jiang, C.; Han, L.; Su, B.; Li, W. -H. ; Zhao, Z. | Mol. Biol. Evol. 24(9), 1991-2000 | |||
| 133 | 2007 | External factors accelerate expression divergence between duplicate genes | Ha, M.; Li, W. H. ; Chen, Z. J. | Trends Genet 23(4), 162-166 | |||
| 134 | 2007 | A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection | Hanada, K.; Zhang, X.; Borevitz, J. O.; Li, W. H. ; Shiu, S. H. | Genome Research 17(5), 632-640 | |||
| 135 | 2007 | A systematic approach to detecting transcription factors in response to environmental stresses | Lin, LH; Lee, HC; Li, WH ; Chen, BS | BMC Bioinformatics 8, 473 | |||
| 136 | 2007 | The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes | Hanada, K.; Shiu, S. -H.; Li, W. -H. | Mol. Biol. Evol. 24(10), 2235-2241 | |||
| 137 | 2007 | On the robust circuit design schemes of biochemical networks: Steady-state approach | Chen, B. -S.; Wu, W. -S.; Wang, Y. -C.; Li, W. -H. | IEEE Transaction on Biomedical Circuits and Systems 1(2), 91-104 | |||
| 138 | 2007 | Patterns of internal gene duplication in the course of metazoan evolution | Chen, C. C.; Li, W. -H. ; Sung, H. M. | Gene 396(1), 59-65 | |||
| 139 | 2007 | Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors | Wang, D. ; Sung, H. M.; Wan, T. Y.; Huang, C. J.; Yang, P.; Chang, T.; Wang, Y. C.; Tseng, D. L.; Wu, J. P.; Lee, T. C.; Shih, M. C. ; Li, W. H. | Genome Research 17, 1161-1169 | |||
| 140 | 2007 | On the adaptive design rules of biochemical networks in evolution | Chen, B. -S.; Wu, Wan. -S.; Wu, Wei. -S.; Li, W. -H. | Evolutionary Bioinformatics 3, 27-39 | |||
| 141 | 2007 | Human TRIM71 and its nematode homologue are targets of let-7 microRNA and its zebrafish orthologue is essential for development | Lin, Y. -C.; Hsieh, L. -C.; Kuo, M. -W; Yu, J. ; Kuo, H. -H.; Lo, W. -L.; Lin, R. -J.; Yu, A. -L.; Li, W. -H. | Molecular Biology and Evolution 24(11), 2525-2534 | |||
| 142 | 2006 | Episodic molecular evolution of some protein hormones in primates and its implications for primate adaptation | Yi, S.; Li, W-H. | Primate Origins: Adaptation and Evolution (New York, NY, USA : Springer) | |||
| 143 | 2006 | Human adaptive evolution at Myostatin (GDF8), a regulator of muscle growth | Saunders, M. A.; Good, J. M.; Lawrence, E. C.; Ferrell, R. E.; Li, W. H. ; Nachman, M. W. | Am J Hum Genet 79(6), 1089-1097 | |||
| 144 | 2006 | Nucleotide variation and haplotype diversity in a 10-kb noncoding region in three continental human populations. | Zhao, Zhongming; Yu, Z. Y.; Fu, Y. -X.; Li, W. -H. | Genetics 174(1), 399-409 | |||
| 145 | 2006 | Role of positive selection in the retention of duplicate genes in mammalian genomes | Shiu, S. H.; Byrnes, J. K.; Pan, R.; Zhang, P.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 103(7), 2232-2236 | |||
| 146 | 2006 | Patterns of expansion and expression divergence in the plant polygalacturonase gene family | Kim, J.; Shiu, S. -H.; Thoma, S.; Li, W. -H. ; Patterson, S. | Genome Biology 7(9), R87 | |||
| 147 | 2006 | Protein function, connectivity, and duplicability in yeast | Prachumwat, A.; Li, W. -H. | Mol. Biol. Evol. 23(1), 30-39 | |||
| 148 | 2006 | Protein complexity, gene duplicability, and gene dispensability in the yeast genome. | Lin, Y. -S.; Hwang, J. -K.; Li, W. -H. | Gene 387(1-2), 109-117 | |||
| 149 | 2006 | Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes | Lin, Y. S.; Byrnes, J. K.; Hwang, J. K.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 103(39), 14412-14416 | |||
| 150 | 2006 | Radical amino acid change versus positiveselection in the evolution of viral envelope proteins | Hanada, K.; Gojobori, T.; Li, W. -H. | Gene 385, 83-88. | |||
| 151 | 2006 | Reorganization of adjacent gene relationships in yeast genomes by whole genome duplication and gene deletion | Byrnes, J. K.; Morris, G. P.; Li, W. -H. | Mol. Biol. Evol. 23(6), 1136-1143 | |||
| 152 | 2006 | Are GC-rich isochores vanishing in mammals? | Gu, J.; Li, W. -H. | Gene 385, 50-56 | |||
| 153 | 2005 | Statistical methods for identifying yeast cell cycle transcription factors | Tsai, H. K. ; Lu, H. H. S.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 102(38), 13532-13537 | |||
| 154 | 2005 | The chimpanzee and us | Li, W. H. ; Saunders, M. A. | Nature 437, 50-51 | |||
| 155 | 2005 | A General Tendency for Conservation of Protein Length across Eukaryotic Kingdoms | Wang, D. ; Hsieh, M.; Li, W. H. | Molecular Biology and Evolution 22(1), 142-147 | |||
| 156 | 2005 | Patterns of segmental duplications in the human genome. | Zhang, L.; Lu, H. H. S.; Chung, W. -Y.; Yang, J.; Li, W. -H. | Mol. Biol. Evol. 22, 135-141 | |||
| 157 | 2005 | Gene expression evolves faster in narrowly than in broadly expressed mammalian genes | Yang, J.; Su, A.; Li, W. H. | Mol. Biol. Evol. 22(10), 2113-2118 | |||
| 158 | 2005 | Comparative methods for the analysis of gene expression evolution: An example of using yeast functional genomic data. | Oakley, T. H.; Gu, Z.; Abouheif, E.; Patel, N. H.; Li, W. -H. | Mol. Biol. Evol. 22, 40-50 | |||
| 159 | 2005 | Evidence from opsin genes rejects nocturnality in ancestral primates | Tan, Y.; Yoder, A. D.; Yamashita, N.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 102(41), 14712-14716 | |||
| 160 | 2005 | Expression divergence between duplicate genes | Li, W. H. ; Yang, J.; Gu, X. | Trends Genet 21(11), 602-607 | |||
| 161 | 2005 | How strong is the mutagenicity of recombination in mammals? | Huang, S. -W.; Friedman, R.; Yu, N.; Yu, A.; Li, W. -H. | Mol. Biol. Evol. 22(3), 426-431 | |||
| 162 | 2005 | Dynamic modeling and gene expression prediction for cis regulatory circuits via cross gene-identification | Lin, L. H.; Lee, H. C.; Li, W. H. ; Chen, B. S. | BMC Bioinformatics 6, 258 | |||
| 163 | 2005 | Human SNPs reveal no evidence of frequent positive selection. | Zhang, L.; Li, W. -H. | Mol. Biol. Evol. 22(12), 2504-2507 | |||
| 164 | 2005 | Molecular evolution of recombination hotspots and highly recombining pseudoautosomal regions in hominoids | Yi, S.; Li, W. -H. | Mol. Biol. Evol. 22(5), 1223-1230 | |||
| 165 | 2005 | Evolutionary diversification of DNA methyltransferases in eukaryotic genomes. | Ponger, L.; Li, W. -H. | Mol. Biol. Evol. 22(4), 1119-1128 | |||
| 166 | 2005 | A new measure of the robustness of biochemical networks. | Chen, B-S; Wang, Y-C; Wu, W-S; Li, W. H. | Bioinformatics 21(11), 2698-2705 | |||
| 167 | 2005 | Prediction of splice sites with dependency graphs and their expanded Bayesian networks. | Chen, T. -M.; Lu, C. -C.; Li, W. H. | Bioinformatics 21(4), 471-482 | |||
| 168 | 2005 | Transcription factor families have much higher expansion rates in plants than in animals | Shiu, S. -H.; Shih, M-C. ; Li, W. H. | Plant Physiology 139(1), 18-26 | |||
| 169 | 2004 | Nucleotide diversity in gorillas | Yu, N.; Jensen-Seaman, M. I.; Chemnick, L.; Ryder, O.; Li, W. -H. | Genetics 166, 1375-1383 | |||
| 170 | 2004 | Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. | Shiu, S. -H.; Karlowski, W. M.; Pan, R.; Tzeng, Y. -H.; Mayer, K. F. X.; Li, W. H. | The Plant Cell 16(5), 1220-1234 | |||
| 171 | 2004 | Comparison of three methods for estimating rates of synonymous and non-synonymous nucleotide substitutions | Tzeng, Y-H; Pan, R.; Li, W. H. | Mol. Biol. Evol. 21(12), 2290-2298 | |||
| 172 | 2004 | Duplicate genes increase gene expression diversity within and between species | Gu, Z.; Rifkin, S. A.; White, K. P.; Li, W. H. | Nat Genet 36(6), 577-579 | |||
| 173 | 2004 | Molecular evolution of bat color vision genes | Wang, D. ; Oakley, T.; Mower, J.; Shimmin, L. C.; Yim, S.; Honeycutt, R. L.; Tsao, H.; Li, W. -H. | Molecular Biology and Evolution 21(2), 295-302 | |||
| 174 | 2004 | Higher gene duplicabilities for metabolic proteins than for non-metabolic proteins in yeast and E. coli. | Marland, E.; Prachumwat, A.; Maltsev, N.; Gu, Z.; Li, W. H. | J. Mol. Evol. 59(6), 806-814 | |||
| 175 | 2004 | Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes | Shiu, S. -H.; Li, W. H. | Mol. Biol. Evol. 21(5), 828-840 | |||
| 176 | 2004 | Mammalian housekeeping genes evolve more slowly than tissue-specific genes. | Zhang, L.; Li, W. -H. | Mol. Biol. Evol. 21(2), 236-239 | |||
| 177 | 2004 | Developmental constraint on gene duplicability in fruit flies and nematodes | Yang, J.; Li, W. H. | Gene 340(2), 237-240 | |||
| 178 | 2004 | Recombination has little effect on the rate of sequence divergence in pseudoautosomal boundary 1 among humans and great apes | Yi, S.; Summers, T. J.; Pearson, N. M.; Li, W. H. | Genome Res 14(1), 37-43 | |||
| 179 | 2004 | Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. | Qin, H.; Wu, W. -B; Comeron, J. M.; Kreitman, M.; Li, W. -H. | Genetics 168(4), 2245-2260 | |||
| 180 | 2004 | Different age distribution patterns of human, nematode and Arabidopsis duplicate genes. | Zhang, P.; Min, W.; Li, W. H. | Gene . 342(2), 263-268 | |||
| 181 | 2004 | Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle | Chen, H. -C.; Lee, H. -C.; Lin, T. -Y.; Li, W. H. ; Chen, B. - S. | Bioinformatics 20(12), 1914-1927 | |||
| 182 | 2004 | Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. | Chaw, SM; Chang, CC; Chen, HL; Li, W-H | J. Mol. Evol. 58(4), 424-441 | |||
| 183 | 2003 | Molecular evolution meets the genomics revolution | Wolfe, K.; Li, W. -H. | Nature Genetics Supplement | |||
| 184 | 2003 | Comment on "Chromosomal Speciation and Molecular Divergence-Accelerated Evolution in Rearranged Chromosomes | Lu, J.; Li, W. H. ; Wu, C. I. | Science | |||
| 185 | 2003 | ETOPE: Evolutionary Test of Predicted Exons | Nekrutenko, A.; Chung, W. -Y.; Li, W. -H. | Nucleic Acid Res | |||
| 186 | 2003 | Different Evolutionary Patterns between Young Duplicate Genes in the Human Genome. | Zhang, P.; Gu, Z.; Li, W. -H. | Genome Biology 4, R56 | |||
| 187 | 2003 | DNA polymorphism and selection at the melanocortin-1 receptor gene in normally pigmented southern African individuals | John, PR; Makova, K; Li, WH ; Jenkins, T; Ramsay, M | Annals of the New York Academy of Sciences 994, 299-306 | |||
| 188 | 2003 | An evolutionary approach reveals a high protein-coding capacity of the human genome | NEKRUTENKO, A.; CHUNG, W. -Y.; Li, W. -H. | Trends Genet. 19(6), 306-310 | |||
| 189 | 2003 | Low nucleotide diversity in chimpanzees and bonobos. | Yu, N.; Jensen-Seaman, M. I.; Chemnick, L.; Kidd, J. R.; Deinard, A. S.; Ryder, O.; Kidd, K. K.; Li, W. -H. | Genetics 164(4), 1511-1518 | |||
| 190 | 2003 | Divergence in the spatial pattern of gene expression between human duplicate genes. | Makova, K. D.; Li, W. -H. | Genome Res. 13(7), 1638-1645 | |||
| 191 | 2003 | Rate of protein evolution vs. fitness effect of gene deletion | Yang, J.; Gu, Z.; Li, W. -H. | Mol. Biol. Evol. 20(5), 772-774 | |||
| 192 | 2003 | Alignment of genomic sequences using bit-level operations. | Shih, A. C. -C.; Li, W. -H. | Mol. Biol. Evol. 20(8), 1299-1309 | |||
| 193 | 2003 | Effects of GC content and mutational pressure on the lengths of exons and coding sequences | Xia, X.; Xie, Z.; Li, W. -H. | J. Mol. Evol. 56(3), 362-370 | |||
| 194 | 2003 | Organismal complexity, protein complexity, and gene duplicability | Yang, J.; Lusk, R.; Li, W. -H. | Proceedings of the National Academy of Sciences of the United States of America 100(26), 15661-15665 | |||
| 195 | 2003 | Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans. | Cavalcanti, A. R. O.; Ricardo, Ferreira; Gu, Z.; Li, W. -H. | J. Mol. Evol. 56(1), 28-37 | |||
| 196 | 2003 | Historical contingency in the evolution of primate color vision | Dominy, N. J.; Svenning, J. -C.; Li, W. -H. | J. Hum. Evol. 44(1), 25-45 | |||
| 197 | 2002 | Detection of Gene Duplications and Block Duplications in Eukaryotic Genomes | Li, W. -H. ; Gu, Z.; Cavalcanti, A. R. O.; Nekrutenko, A. | J. Structural Functional Genomics | |||
| 198 | 2002 | Male-driven evolution | Li, W. -H. ; Yi, S.; Makova, K. | Current Opinion in Genetics & Development | |||
| 199 | 2002 | A Study of the Phylogeny of Brassica rapa, B. nigra, Raphanus sativus and Their Related Genera Using Non-coding Regions of Chloroplast DNA. | Yang, Y. -W.; Tai, P. -Y.; Chen, Y.; Li, W. -H. | Molecular phylogenetics and evolution 23(2), 268-275 | |||
| 200 | 2002 | Larger Genetic Differences within Africans than between Africans and Eurasians | Yu, N.; Chen, F. -C.; Ota, S.; Jorde, L. B.; Pamilo, P.; Patthy, L.; Ramsay, M.; Jenkins, T.; Shyue, S. -K. ; Li, W. -H. | Genetics 161:269-274. | |||
| 201 | 2002 | Signatures of domain shuffling in the human genome | Kaessmann, H.; Zöllner, S.; Nekrutenko, A.; Li, W. -H. | Genome Res. 12: 1642-1650. | |||
| 202 | 2002 | Opsin gene and photopigment polymorphism in a prosimian primate | Jacobs, G. H.; Deegan, J. F.; Tan, Y.; Li, W. -H. | Vision Res. 42:11-18. | |||
| 203 | 2002 | The influence of adjacent nucleotides on the pattern of nucleotide substitution in mitochondrial introns of angiosperms. | Yang, Y. -W.; Chen, Y.; Li, W. -H. | J. Mol. Evol. 55:111-15. | |||
| 204 | 2002 | Functional promiscuity of squirrel monkey growth hormone receptor toward both primate and nonprimate growth hormones | Yi, S.; Bernat, B.; Pál, G.; Kossiakoff, A.; Li, W. -H. | Mol. Biol. Evol. 19, 1083-1092 | |||
| 205 | 2002 | Identification of essential amino acid changes in paired domain evolution using a combination of evolutionary analysis and in vitro and in vivo studies. | Sun, H.; Merugu, S.; Gu, X.; Dickinson, D. P.; Callaerts, P.; Li, W. -H. | Mol. Biol. Evol. 19, 1490-1500 | |||
| 206 | 2002 | Strong male-driven evolution of DNA sequences in humans and apes | Makova, K. D.; Li, W. H. | Nature 416, 624-626 | |||
| 207 | 2002 | DNA Polymorphism in a world-wide sample of human X chromosomes. | Yu, N.; Fu, Y. -X.; Li, W. -H. | Mol. Biol. Evol. 19, 2131-2141 | |||
| 208 | 2002 | Slow molecular clocks in Old World monkeys, apes and humans. | Yi, S.; Ellsworth, D. L.; Li, W. -H. | Mol. Biol. Evol. 19, 2191-2198 | |||
| 209 | 2002 | Rapid divergence in expression between duplicate genes inferred from microarray data | Gu, Z.; Nicolae, D.; Lu, H. H. -S; Li, W. -H. | Trends Genet. 18:609-613 | |||
| 210 | 2002 | Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. | Gu, Z.; Cavalcanti, A.; Chen, F. -C.; Bouman, P.; Li, W. -H. | Mol. Biol. Evol. 19, 256-262 | |||
| 211 | 2001 | NJML+: An extension of the NJML method to handle protein sequence data and computer software implementation | Ota, S.; Li, W. -H. | Mol. Biol. Evol. 18(11),1983-1992 | |||
| 212 | 2001 | Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter | Makova, K. D.; Ramsay, M.; Jenkins, T.; Li, W. -H. | Genetics 158(3), 1253-1268 | |||
| 213 | 2001 | The KA/KS ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study | Nekrutenko, A.; Makova, K. D.; Li, W. -H. | Genome Res. 12:198-202. | |||
| 214 | 2001 | Transposable elements are found in a large number of human protein coding regions | Nekrutenko, A.; Li, W. -H. | Trends in Genetics 17:619-621 | |||
| 215 | 2001 | Global Patterns of Human DNA Sequence Variation in a 10-kb Region on Chromosome 1 | Yu, N.; Zhao, Z.; Fu, Y-X; Ramsay, M.; Jenkins, T.; Leskinen, E.; Patthy, L.; Jorde, L.; Sambuughin, N.; Li, W. -H. | Mol. Biol. Evol. 18, 214-222 | |||
| 216 | 2001 | Episodic evolution of growth hormone in primates and emergence of the species specificity of human growth hormone receptor | Liu, J. -C.; Makova, K.; Adkins, R. M.; Gibson, S.; Li, W. -H. | Mol. Biol. Evol. 18, 945-953 | |||
| 217 | 2001 | Isolation of Cladonema Pax-B genes and studies of the DNA binding properties of cnidarian Pax paired domains | Sun, H.; Dickinson, D. P.; Costello, J.; Li, W. -H. | Mol. Biol. Evol. 18, 1905-1918 | |||
| 218 | 2001 | Genomic divergences between human and other hominoids and the effective population size of the common ancestor of human and chimpanzee | Chen, F-C; Li, W. -H. | American journal of human genetics 68, 444-456 | |||
| 219 | 2001 | Allelic variation in the squirrel monkey X-linked color vision gene: Biogeographical and behavioral correlates | Cropp, S.; Boinski, S.; Li, W. -H. | J. Mol. Evol. 54: 734-745. | |||
| 220 | 2001 | Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences | Chen, F. -C.; Vallender, E. J.; Wang, H.; Tzeng, C. -S.; Li, W. -H. | Journal of heredity 92:481-489. | |||
| 221 | 2000 | Fundamentals of Molecular Evolution, 2nd Edition | Graur, D.; Li, W. -H. | Sunderland, Massachusetts | |||
| 222 | 2000 | Genetic diversity of color vision in primates | Li, W. -H. ; Tan, Y.; Boissinot, S.; Shyue, S. -K.; Hewett-Emmett, D. | The Biology of Biodiversity (New York : Springer Verlag) | |||
| 223 | 1999 | Coalescent theory and its application in population genetics | Li, W. -H. ; Fu, Y. -X. | Statistics in Genetics (New York : Springer Verlag) | |||
| 224 | 1999 | Use of phylogenetic inference to test an HIV transmission hypothesis | Krushkal, J.; Li, W. -H. | The Evolution of HIV (Baltimore, MD : The Johns Hopkins University Press) | |||
| 225 | 1999 | Evolutionary genetics of primate color vision: recent progress and potential limits to knowledge | Li, W. -H. ; Boissinot, S.; Tan, Y.; Shyue, S. -K.; Hewett-Emmett, D. | Evol. Biol. (Springer US) | |||
| 226 | 1999 | Coalescing into the 21st century: An overview and prospects of coalescent theory. | Fu, Y. -X.; Li, W. -H. | Theo. Popl. Biol. (Elsevier) | |||
| 227 | 1998 | Dating the age of the last common ancestor of all living organisms with a protein clock | Adkins, R. M.; Li, W. -H. | Horizontal Gene Transfer (New York : Chapman & Hall) | |||
| 228 | 1997 | Molecular Evolution | Li, W. -H | Sunderland, Massachusetts | |||
| 229 | 1997 | Stochastic Models in Population Genetics | Li, W. -H. Ed | Dowden, Hutchinson Ross, Strouds | |||
| 230 | 1994 | Estimation of population parameters and detection of natural selection from DNA sequences | Li, W. -H. ; Fu, Y. -X. | Non-Neutral Evolution: Theories and Molecular Data (New York : Chapman & Hall) | |||
| 231 | 1993 | Nucleotide diversity in humans and evidence for the absence of a severe bottleneck during human evolution | Li, W. -H. ; Xiong, W.; Liu, S. -W; Chan, L. | Genetics of Cellular, Individual, Family, and Population Variability (New York : Oxford University Press) | |||
| 232 | 1992 | Method of linear invariants for phylogenetic reconstruction | Li, W. -H. ; Fu, Y. X. | Modelling and Computer Methods in Molecular Biology and Genetics (New York : Nova Science Publishers) | |||
| 233 | 1992 | Structure and Evolution of the Apolipoprotein and Lipase Gene Families | Chan, L.; Hide, W. A.; Yang, Y. -W.; Li, W. -H. | Cellular and Molecular Biology of Atherosclerosis | |||
| 234 | 1992 | DNA variation in humans and its implications for human evolution | Li, W. -H. ; Sadler, A. | Oxford Surveys in Evolutionary Biology (New York : Oxford University Press) | |||
| 235 | 1991 | Statistical methods for testing molecular phylogenies | Li, W. -H. ; Gouy, M. | Phylogenetic Analysis of DNA Sequences (Oxford Press) | |||
| 236 | 1991 | Fundamentals of Molecular Evolution | Li, W. -H. ; Graur, D. | Sunderland, Massachusetts | |||
| 237 | 1990 | Evolutionary relationships among primary lineages of life inferred from ribosomal RNA sequences. | Gouy, M.; Li, W. -H. | The Ribosome: Structure, Function, and Evolution (Washington, D.C. : American Society for Microbiology) | |||
| 238 | 1990 | Molecular genetics of the plasma apolipoproteins | Chan, L.; Boerwinkle, E.; Li, W. -H. | Molecular Biology of the Cardiovascular System (Philadelphia : Lea & Febiger) | |||
| 239 | 1990 | Statistical tests of molecular phylogenies | Li, W. -H. ; Gouy, M. | Methods of Enzymology (Academic Press) | |||
| 240 | 1989 | Genetic background of human apolipoprotein structure and function | Chan, L.; Li, W. -H. | Biologie prospective. Comptes rendus du 7e Colloque de Pont-a-Mousson. (Paris : John Libbey Eurotext) | |||
| 241 | 1988 | Hormonal control of gene expression | Chan, L.; Li, W. -H. ; Tanimura, M. | The Liver: Biology and Pathobiology (New York : Raven Press) | |||
| 242 | 1986 | Estimation of the numbers of synonymous and nonsynonymous substitutions between protein coding genes | Li, W. -H. | Evolutionary Processes and Theory (New York : Academic Press) | |||
| 243 | 1985 | Accelerated evolution following gene duplication and its implication for the neutralist-selectionist controversy | Li, W. -H. | Population Genetics and Molecular Evolution (Tokyo : Japan Scientific Societies Press) | |||
| 244 | 1985 | Evolution of DNA sequences | Li, W. -H. ; Luo, C. -C.; Wu, C. -I | Molecular Evolutionary Genetics (New York : Plenum) | |||
| 245 | 1985 | Apolopoprotein A-II gene structure: evolutionary implications | Tsao, Y. K.; Luo, C. C.; Li, W. -H. ; Moore, M. N.; Kao, F. T.; Chan, L. | Protides of the Biological Fluids (Oxford : Pergman Press) | |||
| 246 | 1983 | Evolution of duplicate genes and pseudogenes | Li, W. -H. | Evolution of Genes and Proteins (Sinauer Associates : Sunderland, Massachusetts) | |||
| 247 | 1982 | Evolutionary change of duplicate genes | Li, W. -H. | Isozomes: Current Topics in Medical and Biological Research (New York : Alan R. Liss, Inc.) |
