| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 1 | 2020 | Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests | Chen, Cheng-Yu; Chen, Chih-Kuan; Chen, Yi-Ying; Fang, Andrew; Shaw, Grace Tzun-Wen; Hung, Chih-Ming ; Wang, Daryi | Microbiome 8, 129 | | | |
| 2 | 2020 | Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects | Le, MH; Wang, D | Scientific reports 10, 7547 | | | |
| 3 | 2020 | A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model | Brandon-Mong, Guo-Jie; Shaw, Grace Tzun-Wen; Chen, Wei-Hsin; Chen, Chien-Chang ; Wang, Daryi | BMC Microbiology 20, 295 | | | |
| 4 | 2019 | A systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion. | Shaw, G.T.W.; Weng, C.Y.; Chen, C.Y.; Weng, F.C.H.; Wang, D. | SCIENTIFIC REPORTS 9, 6560 | | | |
| 5 | 2019 | Occurrence of zoonotic Cryptosporidium and Giardia duodenalis species/genotypes in urban rodents | Tan, TK; Low, VL; Ng, WH; Ibrahim, J; Wang, D ; Tan, CH; Chellappan, S; Lim, YAL | Parasitology international 69, 110-113 | | | |
| 6 | 2018 | A novel molecular and chromosomal lineage of the anthropophilic Simulium (Simulium) rufibasis subgroup (Diptera: Simuliidae) in Taiwan | Low, VL; Takaoka, H; Adler, PH; Tan, TK; Weng, FC; Chen, CY; Lim, YAL; Ya'cob, Z; Chen, CD; Sofian-Azirun, M; Wang, D | Parasitology research 117, 3137-3143 | | | |
| 7 | 2016 | Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernation | Weng, FCH.; Yang, YJ.; Wang, D. | BMC GENOMICS 17, 1024 | | | |
| 8 | 2016 | MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles. | Shaw, GT; Pao, YY; Wang, D | BMC bioinformatics 17(1), 488 | | | |
| 9 | 2015 | Inferring microbial interaction network from microbiome data using RMN algorithm | Tsai, K.N.; Lin, S.H.; Liu, W.C. ; Wang, D. | BMC System biology 9, 54 | | | |
| 10 | 2015 | Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense). Society for molecular biology and evolution | Pao, Y.Y.; Wang, D. | | | | |
| 11 | 2015 | Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense). | Tzeng, T.D.; Pao, Y.Y.; Chen, P.C.; Weng, F.C.H.; Jean, W.D.; Wang, D. | PLoS One 10(7), e0132860 | | | |
| 12 | 2015 | Population Structure and Historical Demography of the Oriental River Prawn (Macrobrachium nipponense) in Taiwan. | Chen, PC; Shih, CH; Chu, TJ; Wang, D ; Lee, YC; Tzeng, TD | PloS one 10(12), e0145927 | | | |
| 13 | 2014 | Role of antisense RNAs in evolution of yeast regulatory complexity | Daryi Wang ; Chih-Hsu Lin | | | | |
| 14 | 2013 | Evolution of Cis-regulatory Elements in Yeast De Novo Genes | Wang, Daryi | | | | |
| 15 | 2012 | Evolution of cis-regulatory elements in yeast de novo and duplicated new genes | Tsai, Z. T. Y.; Tsai, H. K. ; Cheng, J. H.; Lin, C. H.; Tsai, Y. F.; Wang, D. | BMC Genomics 13, 717 | | | |
| 16 | 2012 | Identification of activated cryptic 5’ splice sites using structure profiles and odds measure | Wang, D. ; Tsai, K. N. | | | | |
| 17 | 2012 | Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast | Chiang, S. F.; Swamy, K. B. S.; Tsai, Z. T. Y.; Hsu, L. T. W.; Lu, H. H. S.; Wang, D. ; Tsai, H. K. | GENE 491(2), 237-245 | | | |
| 18 | 2012 | The impact of normalization and phylogenetic information on estimating the distance for metagenomes. | Su, C. H.; Wang, T. Y.; Hsu, M. T.; Weng, F. C. H.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(2), 619-628 | | | |
| 19 | 2012 | Population Structure and Historical Demography of the Whiskered Velvet Shrimp (Metapenaeopsis barbata) off China and Taiwan Inferred from the Mitochondrial Control Region | Chu, T. J.; Wang, D. ; Haung, H. L.; Lin, F. J.; Tzeng, T. D. | ZOOLOGICAL STUDIES 51(1), 99-107 | | | |
| 20 | 2012 | Identification of Activated Cryptic 5’ Splice Sites using Structure Profiles and Odds Measure | Tsai, K. N.; Wang, D. | NUCLEIC ACIDS RESEARCH 40(10), e73 | | | |
| 21 | 2011 | Gain and Loss of Transcription Factor Binding Sites are Common between Yeast Strains but few Contribute to Expression Variation | Wang, Chuen-Yi; Tsai, Huai-Kuang; Weng, Li-Chuan; Wang, Daryi | | | | |
| 22 | 2011 | Co-expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome | Weng, Li-Chuan; Tsai, Huai-Kuang; Wang, Daryi | | | | |
| 23 | 2011 | MetaABC—an integrated metagenomics platform for data adjustment, binning and clustering | Su, C. H.; Hsu, M. T.; Wang, T. Y.; Chiang, S. F.; Cheng, J. H.; Weng, F. C.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | BIOINFORMATICS 27(16), 2298-2299 | | | |
| 24 | 2011 | Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast | Swamy, B. S. K.; Chu, W. Y.; Wang, C. Y.; Tsai, H. K. ; Wang, D. | BMC Evolutionary Biology 11, 150 | | | |
| 25 | 2011 | Reanalyze unassigned reads in metagenomic data using conserved gene adjacency | Weng, F.C.H.; Su, C.H.; Hsu, M.T.; Wang, T.Y.; Tsai, H.K.; Wang, D. | | | | |
| 26 | 2011 | The impact of normalization and phylogenetic information on estimating the distance metrics for metagenomes | Su, C. H.; Tsai, H. K.; Wang, D. | | | | |
| 27 | 2011 | Autosomal dominant late-onset quadriceps myopathy. Internal medicine | Chien, Y. I.; Nonaka, I.; Wang, D. | INTERNAL MEDICINE 50, 1175-1181 | | | |
| 28 | 2011 | Genetic variations and expansion of Whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence | Chu, T. J.; Wang, D. ; Haung, H. L.; Lin, F. J.; Tzeng, T. D. | BIOCHEMICAL SYSTEMATICS AND ECOLOGY 39, 520–525 | | | |
| 29 | 2011 | Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast | Swamy, K.B.S; Chu, W.Y.; Wang, C.Y.; Tsai, H.K.; Wang, D. | | | | |
| 30 | 2010 | Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency | Weng, F.; Su, C. -H.; Hsu, M. -T.; Wang, T. -Y.; Tsai, H. -K. ; Wang, D. | BMC Bioinformatics 11(1), 565 | | | |
| 31 | 2010 | Gain or loss of transcription factor binding sites (TFBSs) is involved in intra-specific expression differences in yeast | Wang, T. Z.; Tsai, H. K.; Wang, C. Y.; Chou, C. T.; Swamy, K. B. S.; Wang, D. | | | | |
| 32 | 2009 | Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression | Sung, HM; Wang, TY ; Wang, D ; Huang, YS; Wu, JP; Tsai, HK ; Tzeng, J; Huang, CJ; Lee, YC; Yang, P; Hsu, J; Chang, T; Cho, CY; Weng, LC; Lee, TC; Chang, TH ; Li, WH ; Shih, MC | Molecular biology and evolution 26(11), 2533-2538 | | | |
| 33 | 2009 | Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome | Tsai, H. K. ; Huang, P. Y.; Kao, C. U.; Wang, D. | International Journal of Molecular Sciences 10(8), 3658-3670 | | | |
| 34 | 2009 | Adaptation of visual spectra and opsin genes in seabreams | Wang, FY; Yan, HY ; Chen, JS; Wang, TY ; Wang, D | Vision Research 49(14), 1860-1868 | | | |
| 35 | 2009 | Evolution of Olfactory Receptor Genes in East Asian Loaches | Wang, D. ; Wang, T. Y.; Weng, L. C.; Emori, Y.; Tzeng, C. S.; Li, W. H. | Zool Stud 48, 223-237. | | | |
| 36 | 2008 | Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast | Chang, Y. W.; Liu, F. G. R.; Yu, N.; Sung, H. M.; Yang, P.; Wang, D. ; Huang, C. J.; Shih, M. C. ; Li, W. H. | Molecular biology and evolution 25(9), 1863-1875 | | | |
| 37 | 2008 | Molecular adaptation in the opsins of Sparidae in varied photic environments | Chen, J. S. C.; Yang, H. Y.; Wang, T. Y.; Wang, C. Y.; Wang, D. | | | | |
| 38 | 2008 | The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu sequences, and Abundant RNA Editing Sites | Shu-Miaw Chaw ; Arthur Chun-Chieh Shih ; Daryi Wang ; Yu-Wei Wu; Shu-Mei Liu; The-Yuan Chou | Molecular Biology and Evolution 25(3), 603-615 | | | |
| 39 | 2008 | Evidence for positive selection in the TLR9 gene of teleosts | Chen, J. S. C.; Wang, T. Y. ; Tzeng, T. D.; Wang, C. Y.; Wang, D. | Fish & Shellfish Immunology 24(2), 234-242 | | | |
| 40 | 2008 | Population Structure in the Sword Prawn (Parapenaeopsis hardwickii) from the East China Sea and Taiwan Strait Inferred from Intron Sequences | Tzeng, T. D.; Chou, D. J.; Wang, D. ; Haung, H. L.; Yeh, S. Y. | Journal of Crustacean Biology 28(2), 234-239 | | | |
| 41 | 2007 | Evidence for Positive Selection in Teleost TLR9 Gene | Chen, J. S. C.; Wang, T. Y. ; Tzeng, T. D.; Wang, C. Y.; Wang, D. | | | | |
| 42 | 2007 | Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA | Wang, D ; Wu, YW; Shih, AC; Wu, CS; Wang, YN; Chaw, SM | Molecular Biology and Evolution 24(9), 2040-2048 | | | |
| 43 | 2007 | Genetic Diversity and Population Expansion of the Common Mackerel (Scomber japonicus) off Taiwan | Tzeng, T. D.; Haung, H. L.; Wang, D. ; Yeh, S. Y. | J Fish Soc Taiwan 34(3), 237-245 | | | |
| 44 | 2007 | Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors | Wang, D. ; Sung, H. M.; Wan, T. Y.; Huang, C. J.; Yang, P.; Chang, T.; Wang, Y. C.; Tseng, D. L.; Wu, J. P.; Lee, T. C.; Shih, M. C. ; Li, W. H. | Genome Research 17, 1161-1169 | | | |
| 45 | 2007 | Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system | Tsai, H. K.; Su, C. P. C.; Lu, M. Y. ; Shih, C. H.; Wang, D. | BMC Genomics 8, 352 | | | |
| 46 | 2005 | A General Tendency for Conservation of Protein Length across Eukaryotic Kingdoms | Wang, D. ; Hsieh, M.; Li, W. H. | Molecular Biology and Evolution 22(1), 142-147 | | | |
| 47 | 2004 | Molecular evolution of bat color vision genes | Wang, D. ; Oakley, T.; Mower, J.; Shimmin, L. C.; Yim, S.; Honeycutt, R. L.; Tsao, H.; Li, W. -H. | Molecular Biology and Evolution 21(2), 295-302 | | | |
| 48 | 2004 | Cloning of the mismatch recognition protein MSH2 from zebrafish (Danio rerio) and its developmental staged-dependent mRNA expression | Yeh, F. L; Wang, S. Y.; Hsu, L. Y.; Wang, D. ; Hsu, T. | Biochimica et biophysica acta 1680, 129-136 | | | |
| 49 | 2004 | Structural Changes in the Muscular Tissue of Thornfish (Terapon jarbua, Forsskål) under TBT (Tributyltin) Exposure | Wang, Daryi ; Huang, B. Q. | J Fish Soc Taiwan 31(3), 225-234 | | | |
| 50 | 2003 | Bile acid composition in snake bile juice and toxicity of snake bile acids to rats | Yeh, Y. H.; Wang, D. ; Liau, M. Y.; Wu, M. L.; Deng, J. F.; Noguchi, T.; Hwang, D. F. | COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY 136 (3), 277-284 | | | |
| 51 | 2002 | Short-term Toxicity of Grass Carp Bile Powder, 5α-Cyprinol and 5α-Cyprinol Sulfate in Rats | Yeh, Y. H.; Wang, D. ; Deng, J. F.; Chen, S. K.; Hwang, D. F. | Comparative Biochemistry and Physiology C-Toxicology & Pharmacology 131(1), 1-8 | | | |
| 52 | 2002 | Effect of chenodeoxycholic acid on the toxicity of 5alpha-cyprinol sulfate in rats | Yeh, Y. H.; Wang, D. ; Deng, J. F.; Wu, M. L.; Hwang, D. F. | Toxicology 179, 21-28 | | | |
| 53 | 1999 | TBT (tributyltin) Toxicity to the Visual and Olfactory Functions of Tigerperch (Terapon jarbua, Forsskål) | Wang, D. ; Huang, B. Q. | Zoological Studies 38(2), 189-195 | | | |
| 54 | 1998 | Toxic Effects of Tributyltin(TBT)on Early Life Stages of Thornfish(Terapon Jarbua Forsskal) | Wang, D. ; Huang, B. Q. | Journal of the Fisheries Society of Taiwan 25(1), 15-25 | | | |
| 55 | 1998 | Chronic Effects of Tributyltin on the Locomotor of Juvenile Thornfish(Terapon Jarbua Forsskal) | Wang, D. ; Huang, B. Q. | Journal of The Fisheries Society of Taiwan 25(4), 281-288 | | | |
| 56 | 1995 | Corneal damage in young tigerperch (Terapon jarbua) exposed to surfactant linear alkylbenzene sulfonate (LAS) | Huang, B. Q.; Wang, D. | Zool Studies 34, 41-46 | | | |
| 57 | 1995 | Hematological effects of detergent LAS toxicity in young thornfish, Terapon jarbua | Wang, D. ; Huang, B. Q. | Journal of The Fisheries Society of Taiwan 22(2), 163-168 | | | |
| 58 | 1994 | Effect of a linear alkylbenzene sulfonate (LAS) on the respiratory function of tigerperch (Terapon jarbua) | Huang, B. Q.; Wang, D. | Zool Studies 33, 205-210 | | | |
| 59 | 1994 | Effects of LAS on the membrane potential of gill epithelium in young tigerperch (Terapon jarbua) | Wang, D. ; Huang, B. Q. | Zool Studies 33, 170-173 | | | |
