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  1. Scholars Hub of the Academia Sinica
Academia Sinica / Division of Life Sciences / Agricultural Biotechnology Research Center

Chen, Yet-Ran

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  • 25 y. r. chen
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  • 58 期刊論文/journal paper
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Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12024A Novel Adductomics Workflow Incorporating FeatureHunter Software: Rapid Detection of Nucleic Acid Modifications for Studying the ExposomeC. W. Hu; Y. J. Chang; W. H. Chang; M. S. Cooke; Y. R Chen ; M. R. ChaoENVIRONMENTAL SCIENCE & TECHNOLOGY 58(1), 75-89
22023XCP1 cleaves Pathogenesis-related protein 1 into CAPE9 for systemic immunity in ArabidopsisY. L. Chen; F. W. Lin; K. T. Cheng; C. H. Chang; S. C. Hung; T. Efferth; Y. R. Chen NATURE COMMUNICATIONS 14, 4697
32023Nucleic acid adductomics – The next generation of adductomics towards assessing environmental health risksMS Cooke; Y. J. Chang; Y. R. Chen ; C. W. Hu; M. R. ChaoSCIENCE OF THE TOTAL ENVIRONMENT 856(Part 2), 159192
42022Mass spectrometry in the discovery of peptides involved in intercellular communication: From targeted to untargeted peptidomics approachesK. T. Fan; C. W. Hsu; Y. R. Chen MASS SPECTROMETRY REVIEWS Early View
52021Thermally driven formation of polyphenolic carbonized nanogels with high anticoagulant activity from polysaccharidesJ. Y. Mao; Unnikrishnan; B. Unnikrishnan; H. W. Chu; S. G. Harroun; Y. R. Chen ; A. T. Wu; H. T. Chang; H. J. Lin; C. C. HuangBIOMATERIALS SCIENCE 9(13), 4679-4690
62021Is high resolution a strict requirement for mass spectrometry-based cellular DNA adductomics?Y. J. Chang; M. S. Cooke; Y. R. Chen ; S. F. Yang; P. S. Li; C. W. Hu; M. R. ChaoCHEMOSPHERE 274, E129991
72021Quantitative Proteomics Reveals the Dynamic Regulation of the Tomato Proteome in Response to Phytophthora infestansK. T. Fan; Y. Hsu; C. F. Yeh; C. H. Chang; W. H. Chang; Y. R. Chen INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(8), 4174
82021Identification of Novel Biomarkers for Pre-diabetic Diagnosis Using a Combinational ApproachYang, Meng-Ting; Chang, Wei-Hung; Kuo, Tien-Fen; Shen, Ming-Yi; Yang, Chu-Wen; Tien, Yin-Jing; Lai, Bun-Yueh; Chen, Yet-Ran ; Chang, Yi-Cheng ; Yang, Wen-Chin Frontiers in Endocrinology 12, 641336
92020Integrated Hypoxia Signaling and Oxidative Stress in Developmental Neurotoxicity of Benzo[a]Pyrene in Zebrafish EmbryosY. C. Lin; C. Y. Wu; C. H. Hu; T. W. Pai; Y. R. Chen ; W. D. WangAntioxidants 9(8), E731
102020Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and ProgressionYi-Ju Chen; Theodoros I Roumeliotis; Ya-Hsuan Chang; Ching-Tai Chen; Chia-Li Han; Miao-Hsia Lin; Huei-Wen Chen; Gee-Chen Chang; Yih-Leong Chang; Chen-Tu Wu; Mong-Wei Lin; Min-Shu Hsieh; Yu-Tai Wang; Yet-Ran Chen ; Inge Jonassen; Fatemeh Zamanzad Ghavidel; Ze-Shiang Lin; Kuen-Tyng Lin; Ching-Wen Chen; Pei-Yuan Sheu; Chen-Ting Hung; Ke-Chieh Huang; Hao-Chin Yang; Pei-Yi Lin; Ta-Chi Yen; Yi-Wei Lin; Jen-Hung Wang; Lovely Raghav; Chien-Yu Lin; Yan-Si Chen; Pei-Shan Wu; Chi-Ting Lai; Shao-Hsing Weng; Kang-Yi Su; Wei-Hung Chang; Pang-Yan Tsai; Ana I Robles; Henry Rodriguez; Yi-Jing Hsiao; Wen-Hsin Chang; Ting-Yi Sung ; Jin-Shing Chen; Sung-Liang Yu; Jyoti S Choudhary; Hsuan-Yu Chen ; Pan-Chyr Yang; Yu-Ju Chen Cell 182(1), 226-244.e17
112020Transient DNMT3L Expression Reinforces Chromatin Surveillance to Halt Senescence Progression in Mouse Embryonic FibroblastY. C. Y. Yu; T. Z. K. Hui; T. H. Kao; H. F. Liao; C. Y. Yang; C. C. Hou; H. T. Hsieh; J. Y. Chang; Y. T. Tsai; M. Pinskaya; K. C. Yang; Y. R. Chen ; A. Morillon; M. H. Tsai; S. P. LinFrontiers In Cell And Developmental Biology 8, 103
122020The role of peptides cleaved from protein precursors in eliciting plant stress reactionsY. L. Chen; K. T. Fan; S. C. Hung; Y. R. Chen NEW PHYTOLOGIST 225(6), 2267-2282
132019An Improved Scoring Method for the Identification of Endogenous Peptides based on the Mascot MS/MS Ion SearchY. L. Chen; W. H. Chang; C. Y. Lee; Y. R. Chen Analyst 144(9), 3045-3055
142019Phyto-sesquiterpene lactone deoxyelephantopin and cisplatin synergistically suppress lung metastasis of B16 melanoma in mice with reduced nephrotoxicityWen-Wan Chao; Ya-Wen Cheng; Yet-Ran Chen ; Shu-Hua Lee; Ching-Yi Chiou; Lie-Fen Shyur Phytomedicine 56, 194-206
152019Application of data-independent acquisition approach to study the proteome change from early to later phases of tomato pathogenesis responsesK. T. Fan; K. H. Wang; W. H. Chang; J. C; Yang; C. F. Yeh; K. T. Cheng; S. C. Hung; Y. R. Chen INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 20(4), E863
162018Multiple model species selection for transcriptomics analysis of non-model organismsT. W. Pai; K. H. Li; C. H. Yang; C. H. Hu; H. J. Lin; W. D. Wang; Y. R. Chen BMC BIOINFORMATICS 19, 284
172018Functional enrichment analysis based on long noncoding RNA associations.Hung, KS; Hsiao, CC; Pai, TW; Hu, CH; Tzou, WS; Wang, WD; Chen, YR BMC systems biology 12(Suppl 4), 45
182017DNA Modulates the Interaction of Genetically Engineered DNA-Binding Proteins and Gold Nanoparticles: Diagnosis of High-Risk HPV Infection.Mao, JY; Li, HW; Wei, SC; Harroun, SG; Lee, MY; Lin, HY; Chung, CY; Hsu, CH; Chen, YR ; Lin, HJ; Huang, CCACS applied materials & interfaces 9(51), 44307-44315
192017Fenugreek Compound (N55) Lowers Plasma Glucose through the Enhancement of Response of Physiological Glucagon-like peptide-1.Chou, IW; Cheng, YH; Chen, YR ; Hsieh, PC ; King, KScientific reports 7(1), 12265
202017Protein disulfide isomerase a4 acts as a novel regulator of cancer growth through the procaspase pathwayKuo, T-F; Chen, T-Y; Jiang, S-T; Chen, K-W; Chiang, Y-M; Hsu, Y-J; Liu, Y-J; Chen, H-M ; Yokoyama, K K; Tsai, K-C; Yeh, H-H; Chen, Y-R ; Yang, M-T; Yang, C-Y; Yang, W-C Oncogene 36(39), 5484-5496
212017SEPT12 phosphorylation results in loss of the septin ring/sperm annulus, defective sperm motility and poor male fertilityY. R. Shen; H. Y. Wang; Y. C. Kuo; S. C. Shih; C. H. Hsu; Y. R. Chen ; S. R. Wu; C. Y. Wang; P. L. KuoPLOS GENETICS 13(3), e1006631
222016Inhibiting MDSC differentiation from bone marrow with phytochemical polyacetylenes drastically impairs tumor metastasisWen-Chi Wei; Sheng-Yen Lin; Chun-Wen Lan; Yu-Chen Huang; Chih-Yu Lin; Pei-Wen Hsiao; Yet-Ran Chen ; Wen-Chin Yang; Ning-Sun Yang Scientific Reports 6, 36663
232016Urinary exposure marker discovery for toxicants using ultra-high pressure liquid chromatography coupled with Orbitrap high resolution mass spectrometry and three untargeted metabolomics approachesJ. Y. Hsu; J. F. Hsu; Y. R. Chen ; C. L. Shih; Y. S. Hsu; Y. J. Chen; S. H. Tsai; P. C. LiaoANALYTICA CHIMICA ACTA 939, 73-83
242016Metabolic labelling of cholesteryl glucosides in Helicobacter pylori reveals how the uptake of human lipids enhances bacterial virulenceH. M. Jan; Y. C. Chen; Y. Y. Shih; Y. C. Huang; Z. Tu; A. B. Ingel; S. W. Liu; M. S. Wu; J. Gervay-Huage; K. T. Mong; Y. R. Chen ; C. H. LinCHEMICAL SCIENCE 7(9), 6208-6216
252016Immunogenicity of mammary tumor cells can be induced by shikonin via direct binding-interference with hnRNPA1Shu-Yi Yin; Thomas Efferth; Feng-Yin Jian; Yung-Hsiang Chen; Chia-I Liu; Andrew H.J. Wang; Yet-Ran Chen ; Pei-Wen Hsiao ; Ning-Sun Yang Oncotarget 7(28), 43629-43653
262016Identification of metal species by ESI-MS/MS through release of free metals from the corresponding metal-ligand complexesM. Tsednee; Y.-C. Huang; Y.-R. Chen ; K.-C. Yeh Scientific Reports 6, 26785
272016Streamlined membrane proteome preparation for shotgun proteomics analysis with Triton X-100 cloud point extraction and nanodiamond solid phase extractionM. D. Pham; T.-C. Wen; H.-C. Li; P.-H. Hsieh; Y.-R. Chen ; H.-C. Chang ; C.-C. Han MATERIALS 9(5):385
282015ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate – and ethylene-responsive defence genesCatinot, J; Huang, JB; Huang, PY; Tseng, MY; Chen, YL; Gu, SY; Lo, WS ; Wang, LC; Chen, YR ; Zimmerli, LPlant Cell and Environment 38(12), 2721-2734
292015Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information.Lynn, KS; Cheng, ML; Chen, YR ; Hsu, C; Chen, A; Lih, TM; Chang, HY; Huang, CJ; Shiao, MS; Pan, WH ; Sung, TY ; Hsu, WL Analytical chemistry 87(4), 2143-2151
302015Application of a reconstructed omics approach to identify host proteins that interact with Odontoglossum ringspot virus capsid proteinP. C. Lin; W. C. Hu; S. C. Lee; Y. L. Chen; C. Y. Lee; Y. R. Chen ; L. Y. Liu; S. S. LinMOLECULAR PLANT-MICROBE INTERACTIONS EPUB
312015Nonorthogonal tRNA(cys)(Amber) for protein and nascent chain labeling.Koubek, J; Chen, YR ; Cheng, RP; Huang, JJRNA-A PUBLICATION OF THE RNA SOCIETY 21(9), 1672-1682
322015A salt-regulated peptide derived from the CAP superfamily protein negatively regulates salt-stress tolerance in Arabidopsis.Chien, PS; Nam, HG; Chen, YR JOURNAL OF EXPERIMENTAL BOTANY 66(17), 5301-5313
332015Delineation of G-Quadruplex Alkylation Sites Mediated by 3,6-Bis(1-methyl-4-vinylpyridinium iodide)carbazole-Aniline Mustard ConjugatesC. H. Chen; T. H. Hu; T. C. Huang; Y. L. Chen; Y. R. Chen ; C. C. Cheng; C. T. ChenChemistry A European Journal 21(48), 17379-17390
342015Development of a standardized and effect-optimized herbal extract of Wedelia chinensis for prostate cancerTsai, CH; Tzeng, SF; Hsieh, SC; Lin, CY; Tsai, CJ; Chen, YR ; Yang, YC; Chou, YW; Lee, MT; Hsiao, PWPHYTOMEDICINE 22, 406
352015SEPT12 orchestrates the formation of mammalian sperm annulus by organizing core octameric complexes with other SEPT proteinsKuo, YC; Shen, YR; Chen, HI; Lin, YH; Wang, YY; Chen, YR ; Wang, CY; Kuo, PLJOURNAL OF CELL SCIENCE 128, 923-34
362014Multiplex Brain Proteomic Analysis Revealed the Difference in Molecular Therapeutic Effects of Tissue plasminogen activator and Buyang Huanwu Decoction on Cerebral Ischemic Stroke MiceH. J. Chen; Y. C. Shen; Y. J Shiao; K. T. Liou; P. H. Hsieh; C. Y. Lee; Y. R. Chen ; Y. L. LinMOLECULAR & CELLULAR PROTEOMICS
372014MSRB7 reverses oxidation of GSTF2/3 to confer tolerance of Arabidopsis thaliana to oxidative stressLee, S.-H.; Li, C.-W.; Koh, K.W.; Chuang, H.-Y.; Chen, Y.-R. ; Lin, C.-S.; Chan, M.-T. JOURNAL OF EXPERIMENTAL BOTANY 65(17), 5049-5062
382014Data mining application in biomedical informatics for probing into protein stability upon double mutationHuang, L. T.; Wu, C. C.; Lai, L. F.; Gromiha, M. M.; Wang, C. S.; Chen, Y. R. Applied Mathematics & Information Sciences 8(1L), 125-132
392014Quantitative Peptidomics Study Reveals a Wound-Induced Peptide from PR-1 Regulates Immune Signaling in TomatoY. L. Chen; C. Y. Lee; K. T. Cheng; W. H. Chang; R. N. Huang; H. G. Nam; Y. R. Chen PLANT CELL 26(10), 4135-4148
402014Signal transduction triggered by iron to induce the nuclear importation of a Myb3 transcription factor in the parasitic protozoan, Trichomonas vaginalisH. M. Hsu; Y. Lee; P. H. Hsu; H. W. Liu; C. H. Chu; Y. W. Chou; Y. R. Chen ; S. H. Chen; J. H. TaiJOURNAL OF BIOLOGICAL CHEMISTRY 289(42), 29334-29349
412013Deficiency of NPGPx, an oxidative stress sensor, leads to obesity in mice and human.Chang, YC ; Yu, YH; Shew, JY; Lee, WJ; Hwang, JJ; Chen, YH ; Chen, YR ; Wei, PC; Chuang, LM; Lee, WHEMBO molecular medicine 5(8), 1165-79
422013Pregnenolone activates CLIP-170 to promote microtubule growth and cell migrationJ. H. Weng; M. R. Liang; C. H. Chen; S. K. Tong; T. C. Huang; S. P. Lee; Y. R. Chen ; C. T. Chen; B. ChungNATURE CHEMICAL BIOLOGY 9(10), 636-642
432012Tunnel Frit: A Nonmetallic In-Capillary Frit for Nanoflow Ultra High-Performance Liquid Chromatography–Mass SpectrometryApplicationsChen, CJ; Chen, WY; Tseng, MC ; Chen, YR Analytical chemistry 84(1), 297-303
442012UniQua: A Universal Signal Processor for MS-Based Qualitative and Quantitative Proteomics Applications.Chang, WH; Lee, CY; Lin, CY; Chen, WY; Chen, MC; Tzou, WS; Chen, YR Analytical chemistry DOI: 10.1021/ac302281j
452011Cytoskeleton Network and Cellular Migration Modulated by Nuclear-localized Receptor Tyrosine Kinase ROR1Tseng, HC; Kao, HW; Ho, MR; Chen, YR ; Lin, TW; Lyu, PC; Lin, WC Anticancer research 31(12), 4239-4249
462010Visual Indicator for Surfactant Abundance in MS-Based Membrane and General Proteomics ApplicationsChen, Chao-Jung; Tseng, Mei-Chun ; Lin, Han-Jia; Lin, Ting-Wei; Chen, Yet-Ran ANALYTICAL CHEMISTRY 82(19), 8283-8290
472006Quantitative Proteomic and Genomic Profiling Reveals Metastasis-Related Protein Expression Patterns in Gastric Cancer CellsChen, Yet-Ran ; Juan, Hsueh-Fen; Huang, Hsuan-Cheng; Huang, Hsin-Hung; Lee, Ya-Jung; Liao, Mei-Yueh; Tseng, Chien-Wei; Lin, Li-Ling; Chen, Jeou-Yuan ; Wang, Mei-Jung; Chen, Jenn-Han; Chen, Yu-Ju JOURNAL OF PROTEOME RESEARCH 5(10), 2727-2742
482006Multi-Q: a fully automated tool for multiplexed protein quantitationLin, WT; Hung, WN; Yian, YH; Wu, KP; Han, CL; Chen, YR ; Chen, YJ ; Sung, TY; Hsu, WLJournal of proteome research 5(9), 2328-2338
492005Design and performance of a low-flow capillary electrophoresis-electrospray-mass spectrometry interface using an emitter with dual beveled edge.Chen, YR ; Tseng, MC ; Her, GRElectrophoresis 26(7-8), 1376-1382
502004Quantitative proteomic analysis of metabolic regulation by copper ions in Methylococcus capsulatus (Bath)Kao, WC; Chen, YR ; Yi, EC; Lee, H; Tian, Q; Wu, KM; Tsai, SF; Yu, SS; Chen, YJ ; Aebersold, R; Chan, SIJournal of biological chemistry 279(49), 51554-51560
512004A low-makeup beveled tip capillary electrophoresis /electrospray ionization mass spectrometry interface for micellar electrokinetic chromatography and nonvolatile buffer capillary electrophoresisTseng, MC ; Chen, YR ; Her, GRAnalytical chemistry 76(21), 6306-6312
522004A beveled tip sheath liquid interface for capillary electrophoresis-electrospray ionization-mass spectrometryTseng, MC ; Chen, YR ; Her, GRElectrophoresis 25(13), 2084-2089
532003A simple method for fabrication of silver-coated sheathless electrospray emittersChen, YR ; Her, GRRapid Communications in Mass Spectrometry 17(5), 437-441
542003A low-flow ce/electrospray ionization MS interface for capillary zone electrophoresis, large-volume sample stacking, and micellar electrokinetic chromatography.Chen, YR ; Tseng, MC ; Chang, YZ; Her, GRAnalytical Chemistry 75(3), 503-508
552001Analysis of Polymer Additives by Matrix-Assisted Laser Desorption Ionization/Time of Flight Mass Spectrometer Using Delayed Extractionand Collision Induced DissociationShih-Tsung Hsiao; Mei-Chun Tseng ; Yet-Ran Chen ; Guor-Rong HerJournal of the Chinese Chemical Society 48(6A), 1017-1027
562001Sheathless Capillary Electrophoresis/Electrospray Mass Spectrometry Using a Carbon-Coated Tapered Fused-Silica Capillary with a Beveled EdgeChang, YZ; Chen, YR ; Her, GRAnalytical chemistry 73(21), 5083-5087
572000Analysis of coptisine, berberine and palmatine in adulterated Chinese medicine by capillary electrophoresis–electrospray ion trap mass spectrometryChen, YR ; Wen, KC; Her, GRJournal of Chromatography A 866(2), 273-280
582000System Peaks of Cyclodextrins in Capillary ElectrophoresisChen, Y. R. ; Ju, D. D.; Her, G. R.J. High Resol. Chromatogr 23, 409-412
59-Chapter 1-3: Gas Phase Ion-Molecule ReactionY. R. Chen Introduction to Mass Spectrometry
60-Chapter 4: Quantitative AnalysisY. R. Chen Introduction to Mass Spectrometry
61-Chapter 2: Advances in LC Separations for ProteomicsY. R. Chen Advanced LC-MS Applications for Proteomics
62-Chapter 1-1: Electron Impact and Chemical IonizationY. R. Chen Introduction to Mass Spectrometry

 

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